Array 1 54955-54802 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000044.1 Clostridium tetani strain 512-15 contig_0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 54954 24 66.7 40 TA.A..TACAT............. TTAAATTATGCACGCAAGTATGCTTTAAATGGATTATTCT 54890 24 100.0 41 ........................ TTAAATAGACGAAATATTAAAAGTTGCTTGTAATTGCGACG 54825 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 88.9 41 GTTGAACCTTAACATAGGATGTAT # Left flank : CATTAGATAAAATAATTTTAGATATTTATTTTGATATTATACCATTTTTACATAAAAAATTCAATGAAGCGTTAAGTAATGGCTGGGAAGATATTGAAAAGAAATTTAAAAAAAGATTATCAATAGATATAATATTTGATCTTATAAGACAGAACTCAATTGAGTTTTCTGAATTAGAAGAAGAACTTTCTAGAAATAAAACGATAAGTTAGTAATCTTTAAATAATTAATATGTTTATATTATTTAAAGATACACACAATATGACTAGAGACTTTTATATAAACACTAACGTATATTTTTATAACAGAGTAATTTATAATAATTAGGAAAAGAAGATCTAAAGTTTAGTTTTAGATCTTCTTTTTTATCTGACGTCAAAAATACGTCAAAAATAATTCTCTATTATTATCTTGTTTTCTCTATAGTAAATTTATACAAATATAACTAAAAGCTAGTATTTACAATAGTTTATTCGTATAATATCTTATTTTAATATTAA # Right flank : ACCCCAATTCTTTCCAAATATCTTATTCTATCAGCGTCTTATCACCGGGCAGTTCAGTATAACAGTAAAAGGATATGATGGATTTATAGCAGAGTAATGTTAGAGGTAGTTTTTAGCTTAGGCTAGGAGCTACCTCTTTTTTATTGTTGTAAAATGTATAATAATATAATAAATATTTACATTTAGTCCTATATTGTACTATAATGTAAATAATATTATTAAGTATGGGGGGATTTAAATGAAAGCTTTGACTAAGATAGGTAAAATACTTGTAATATTAATAATTTTATCCGTCATAATTGCTATATCACCAAAGCTTGGGTCTATAGTATTTACAATAGTTCCAATAATATATTTAATCTATCTATTCAAGAAAGGACCTAAGTTTAAGAATTATAATTTTTTACTAAAGGGGTTAATTAGTTTCTTTTTAATATTAGTTTCAACCACAGGAATTGGAGGAGTTTTTTCTGAATTTGGAGAAGGAGGTAATAAGTGGA # Questionable array : NO Score: 4.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 94230-94005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000044.1 Clostridium tetani strain 512-15 contig_0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 94229 30 100.0 36 .............................. TACCAGAATCCTGATATAAATCTCCGTAGTTATTTA 94163 30 100.0 34 .............................. AATAGTACATTGCTTAACCCTTTGAATTTACCAT 94099 30 100.0 35 .............................. CCTACAAACAATCCTATTAAAGCATTTCCTATCAT 94034 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GGCGGACTTGTAACTGTTATGGTTAGAGGAGATGTTGGAGCTGTTAAGGCTGCTACAGATGCTGGAGCTGCTGCTGCACAACGTGTTGGAGAATTAGTGTCAGTTCACGTTATACCACGTCCACATTCTGAAGTTGAAGTAATTCTTCCATCAGCTAAAGAAACTGCAAAATAATATTTTAATTATAGTGTAAAGTAAAAAACGTCGCTAAAATTTTTTAGTGACGTTTTTATTTTTGAAAATATAATGGTTAATGAAATAAGTATTTAAATATGCAGAGCCTTTTAAATTATATAGAATTATTGATATAATTAACATATGAATTTTACCAGCCGAAAAGAATTTTAAAATTTAGCTTAATCGTTGATATATAAGAGTTTAAGGTAGGTTTTTATATGATTTATAAAATTTTAAAATCACCTGGTAAATTTTCAATGAAACCTTGAAATATCAATATGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AGATGTGTAAACATTGAAAAGACTAGCTTTATAAAATTTCGTCAAAAGTTTCGTCAAAAATAAATTCTAAAAAATATTTTGAATAACTTGATGAGCTTTTTTTAACATGTCATCATTAACATGGCTATAAGTTTTAAGTGTCTGCTCAACCGAGTGTCCTAATATTCGAGCGGCAGTTTTAAAATCAACCCCATTTGCAATTAACCTAGTGGCATAGGTATGACGCAACTCATGGATGGTTATCTTATAGCCATGTTTTTTTAATTTACCATTCAAGATTGCACAAATAGAGTTTGTGCTTTTAAAATTAAAAATTCTATTATCTATATTCATTACATTTTTCGGTTTATATTTCAACAATTCTTTAATAACTTCATTTGAAACAGGAATAATCCTATTAGAATGTTTGCTTTTAACATTTCCAAATCCCCAATTGCTTTTCTCTATCTTTTTCCATTGTTTATTCACAGTTATAGTACTATTTTTAAAATCTATGTTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 39822-38799 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000050.1 Clostridium tetani strain 512-15 contig_0051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39821 35 80.6 30 A.A...A..TG-.T...................... AGCACAGGAAATATATACAGCTGCTAAGAG 39756 36 100.0 30 .................................... GGAGCAGGTATAGTTACAGCAGCGAATATA 39690 36 100.0 30 .................................... AGATGGCAAAATACTTTAGTGGCAGAAGGT 39624 36 100.0 30 .................................... CTTATTATTTCTACAAGACTGTACATTAGC 39558 36 100.0 30 .................................... TCAACTAAAGATATATCATTATCTCCTAAT 39492 36 100.0 30 .................................... CAGGAAGGGTTGCTTGAAATAGATGGTTCT 39426 36 100.0 30 .................................... TGATGAAATTATAGAAGTACAATAGTTCAC 39360 36 100.0 30 .................................... ACAAGAACAAATCTAAATGAAAATGCAGAT 39294 36 100.0 30 .................................... AGAAGTTGTGGTGGTACATTAAAGGCTATA 39228 36 100.0 30 .................................... TGCAAAGTATGTTAAAAGATTTAACCAAAT 39162 36 100.0 30 .................................... ACAAGTCTAATGTATAAGCATATATGTTAG 39096 36 100.0 30 .................................... TTTCCAGTAACACCAGTTAAAGTTGCCATA 39030 36 100.0 29 .................................... GTACTTATTACTGAAACATTACAGATTTA 38965 36 100.0 30 .................................... TGAAGAAATGAGATTGTATGAGGATATAGT 38899 36 100.0 29 .................................... AGGTTTTCCTGTTCTACATTCACTTTGAG 38834 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.8 30 GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Left flank : ATTCTTTCCTTATTTTTAAAGAAAGTATTATAAAGTTTAAATTCTTCCATAAGGAGTGGATCTTTAACCTTTAATTCTCTCATAATTACAGTTGCTCTGTCAGTAGAGAATTCCTCACTATAACAAAAAACATCGTAAAGCCAATCTTTTGAAGGTATTGGTTTTTTCATGTTAGAATACACAAGTATATTACTGGTTGTATCTCCTTTTTCTATATGATATTTACTCCAAAAGGCATTGTTATTTGTTAATTTAATAATTTTAATATTTTCTATATTAAGTTCATCTATATCTTTAGAAAAATCTTCATTACTATCATACCAAAATACTATATGACGTTTCTTTCCATTGGTTAATGGTTTTAAAAATAGTTCGTTTATAAAATTTCTTATTTCTTGTAAATTCATTTCTATTTCTCCTATCAAAATAAATAATTTGCATTCCTTCTAATTTATTTTAATTCCATGTAAATTATTATAACAAAAACAAACACTTTTTCT # Right flank : AGGAACTACCAAAGCCCTTGAATCTGCTAAGTTTCAAGGGCTTTGGTCTTTTTAAAAAACATTTAATTGACTGGAATTTATATTCTTTTCTTGTGGTTTTGGCGAACCTACTAAAAACTTCATTTCACAATATTGTTTTTCTGTAATTTGCAAATACCTAACAGATCCTTTAGGAGGTAGATTCTTCTTAAGCCTTGCAACATGCTTATTTGCACCATCTATTCCATTACAAATTCTAGAATATACAGAGTATTGAATCATTATATATCCATCATTTAATAAAAATCTTCTAAAATTCTGGTACTCTTTTCTATCTTCTCTTTTTACAACAGGCAAATCAAAAAATACAATTAGTCTCATAAATCTCCTACTCATAATAATGGTATTCCAATGGTTTTATTAGTGGTAATTTTAATAATCTAAAATCTTTTTTACTACAAGCCGTTGTATAAGAAGCTACCATTTTATCTATGGCATTTAAAATAGAATGATTTTGTTTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCCATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 4161-3418 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000045.1 Clostridium tetani strain 512-15 contig_0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4160 30 100.0 35 .............................. TATGGGTGATAAAAATATAAGATATGTAGTTGTAT 4095 30 100.0 35 .............................. ACCCATTGTTCTATCTCATCTAAACGGTTTTCGAT 4030 30 100.0 34 .............................. ATATACCACGAATACCATAGGGATAGTAGGAGGT 3966 30 100.0 35 .............................. AAAACATACAGCAAGGAATATAGTAAGTGGTTATT 3901 30 100.0 33 .............................. AACTCACATTTCCCAACGCATTACCTACAACTC 3838 30 100.0 36 .............................. AATACTTCTTCTATATAATCTTTTTCCATATAATTT 3772 30 100.0 34 .............................. CAGCTCTGTGTATCTCTGTAAGGTATCCAATTTC 3708 30 100.0 36 .............................. TACTTTTCAAAAATAAAGATGGTTTGTTAGAATTAT 3642 30 100.0 34 .............................. TAAAGCTTGGGTAAAGAACTGGGGTGGAATACAG 3578 30 100.0 36 .............................. TTATAAATAACTGGGATTTAAGTTGTGTAGAGTTAA 3512 30 100.0 35 .............................. GTGAAAATAGAAGGAAAAATAATCCTAATAATACA 3447 30 93.3 0 ............................TA | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 99.4 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTATTGGACTCTAAAAAAGACGATAAAATAACAATAATTAATAACTCTAAAATAGATGAGGGCAAATTCTATATTGGAGTTTTAAATTCTGAGAATGAGATTATTGCTTTTGATAAAGAAAAGCAAGACAAAATAACATTTGTAACTCCTGAAGAAGGATGCTATCTTGTTAGGATTTTAGCTAAAAACTCTAGTGGAAAATGTGATGTGAAAGTAGATTCTAAAAAAGGCATAGATCTTAATTACAATTCTATTAATGGGCATAATATGGGTTTACTAGAGAAAAATAATTGAATAAATCTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAAGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATGGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AACTAAGCGGAACTATTAAAAGACAGGAAGTGGAAAAATGTTACATTTGAATTTACTGCCAATTCTTAATTTCAAAAAACTCCTTTATAATAATATTGTAATATTGAAATATTATTGGTATAATACACTCAAGTAAAGTTTATTATAAACTTACTTTGATTGTTATAATTGTGGGTTAATTTTATATTTAAGCTAAAGAATTACTAATTCATTCATATCTTAATACTTTTAAAATAGGAGAATGTGTATATGAAAGAATTTAGTATTAATACAGATGTTTATTTTGGAGAAGGCTCTTTAGATAGACTAAATGAAATTAAAAATAAAAGAGTACTAATTGTATGCGATAAGTTTATGGAAACTTCAGGTATGGTTACAAAAGTACAACAAAAGCTTACTGACTGTGAAGTAACCATATACAGTGATATTGTTCCTGACCCATCTGTAGAAGTTATTGCATCTGGTATTCAAAAATTACAGAGTTGTAATGCACAGATTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 6948-6012 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000045.1 Clostridium tetani strain 512-15 contig_0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6947 30 100.0 35 .............................. ATTCTTCTTCTGTTATTGTTTTATCTTGCGACCAC 6882 30 100.0 36 .............................. AAACCAAAAGAAACATAGTCAAATTCTGTATAATAG 6816 30 100.0 34 .............................. TGATATAAAAATTTACAATGTAAATTCAGAAACA 6752 30 100.0 34 .............................. TTGTTATAAGGAAGGATAGATATGAAAATAAATT 6688 30 100.0 35 .............................. TCTTCTCTTAAGGCTTTTAATAATGGATCTTCCTT 6623 30 100.0 36 .............................. TATAGAAGATGAATTCTACATTAATGAGGAAGTTGT 6557 30 100.0 34 .............................. TAAGGCTTGGGTAAAGAACTGGGGTGGAATACAG 6493 30 100.0 35 .............................. TTATAAAATCCCTCCATCTAAATTATTATCTGCTT 6428 30 100.0 35 .............................. CATTTTAACTATGATTTAGATATGCTTTACGAAAG 6363 30 100.0 34 .............................. TCTCTGATTTTAGATTTTTCTAATAATAATTCGC 6299 30 100.0 34 .............................. CTTAGTTCTTCACATAAGTAAAAATGTTCGCTAG 6235 30 100.0 36 .............................. GGGGTTAAAAGTAAAATATAATATACATTATTAATA 6169 30 100.0 34 .............................. TTTGTAAAATCAACATCTTCCCATTTTAAAGTTG 6105 30 100.0 34 .............................. ATCTTATCTATGTAAATTAGAAAACAAAGGGTTA 6041 29 90.0 0 ................-.A...T....... | T [6028] ========== ====== ====== ====== ============================== ==================================== ================== 15 30 99.3 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TATGTAGTAGATATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCGATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTAATGAAAAGCAAAGAGCCATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGGTAATTTATTAATAGGCGGAGGAATAATTGAATAAATTTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAACGAAACCTTGAAATATCAATGGGTTTGTGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAATCATTTTGAGAATATAAATTTATAATGTGACTATAAAATTTTAGCCCTAAAATAAAAGAAATGGTGAAATGTTTTGGTCATACCCTCAACTACATATATGAGAATAGTCTCTTCCTCTCCATTAACATATAATATTTGTCCTGATAGTGGGTAATTTTAAAATTTTTATGCATATTTATATAAAATAGAGTATTACTTTCTTAGGAAAAATAAGTTTTATAAAATAATTATATTTTATATTTATTGATGTTTTATTATATGAGAGCCTTGCTAAATGTATTTTACAGCTATTTATAATAATTGGTATTTAGCCAATCCTAAATATAGGTCTTTGCTCCCATATGCCATACGTACACTTTATTTGAATTAACCTTTAATGAAGTTGAGATTTCATTAAAGGTTAAATTATTGTAATATCTTAAGATTAAAAGCTAGTCATTTTCAATTACTATAGAATTTACTAGTTTATCATGAAATCCTTGATTACTATCATTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 12006-11128 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000045.1 Clostridium tetani strain 512-15 contig_0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12005 30 100.0 35 .............................. TCTGTAGTGAATTTAGTCCCATTTGTGTTCATTGT 11940 30 100.0 35 .............................. AACAAAAAATATTAGAGTTGCAAAACTAGCAACTC 11875 30 100.0 37 .............................. GAATCTTTACCAAAGCTTTTTATACCTTGGCTTGCAA 11808 30 100.0 37 .............................. CAATACAAAGAGTAGGTCCATGAGTGAAATTATTAAG 11741 30 100.0 35 .............................. ATATTTAACACTAAGTCATTATCATTCCAATAAAA 11676 30 100.0 34 .............................. AGAGCTATAACATACGAAGAAAGGATACAAACAT 11612 30 100.0 36 .............................. TTATTTAAAGTTATATTTCCATGGAGTTTTGAAAAT 11546 30 100.0 35 .............................. GAGGTAATCTTAAGCTTTTAGCATCTTTTCTCAAT 11481 30 100.0 34 .............................. AAGCTTTGGAGGTAAAGGGAATAATTATGGATAT 11417 30 100.0 36 .............................. GAGTTACATAAGTATTTATTACGTTGGTATAACTAT 11351 30 100.0 34 .............................. CCTTCTTTTATTAAAAAACCTCTTACAAAATCTA 11287 30 100.0 35 .............................. CCTACAGAAGGGAAGTGTTTTATCTTGTTTCCTAG 11222 30 96.7 35 .................A............ TTTTTTATGTCTACGGGTATGGTGGGTATAAAAGA 11157 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.8 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATTTACCTTTAAATAGATCCTCAACATAGGATGTATTTAAATTAAGTATTTTTCTTTTTAGCGGATTACGTAGATAGCATATAAATGCTCTTAATAGCAATTTAAGGAAATATATGGTGTAATGGCGTTGTTATAAATTTGAAGGAGTGATATTTCATGAGTATTTTAACAAGTTGTATTATTGGACTTGCTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATAAAAAATAAAGACACATGGTATGAGGGGAATCGTTTCTGCGGGACAATACTTTTAATAAGTGGTATTATTTTTATACCATTTTCAATATTAATAAAATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 14633-14127 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMBE01000045.1 Clostridium tetani strain 512-15 contig_0046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================= ================== 14632 30 100.0 36 .............................. TTAGCAAGAGAAGATAGCTACCAGGAAGCAAGTAAA 14566 30 100.0 35 .............................. TTCGTTTGAGAACCTGTTGGTTGCCAACCTTGTTT 14501 30 100.0 55 .............................. CCGGCAATGATATAGAAGGTACTATAACACTAAAGGTTGAACAATAACACTAAAG 14416 30 100.0 34 .............................. CTAGCTTGGCGTTCTTTTTCTTTTGAATAAATAT 14352 30 100.0 36 .............................. TGAGATTTCCCAATTCTAATGGCAATTGCTTGCCGT 14286 30 100.0 36 .............................. TCAAAATTCTGTAGCAATCGAAGAATATATACAGTT 14220 30 100.0 34 .............................. GTAGCTCCATCCATCTGCTTTATTTCTTCTATAA 14156 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ======================================================= ================== 8 30 99.6 38 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TACTTGTTAAACAAGTTGAAACTTATCAAAGTAGAAGACTAGAAGTTGCAAAAAGTATAGTGGAGGCTATTGGAGGTAATATATACGAGCTGTTATATCATTATTATAAACATGATAAAAAATCATAGTAAAATAAACTTGAAAAAAGCCAATGATATAAAACAAATAATGCAAGTGGAAGGGGAAACTTGGCAAAGATTTTATGGCGAATTTAAAAATATACTTCCAGAGGAATTCGTTATGAATAATAAAGTTTATGATGAAGAAATATTAGGAAATCCATACAGTTGTACAGGGGAAGACTTGATATTATAAATAAAAGTTTTACCAGGTGGTTTTAAATAGGAATATGCTCTAATATATTGATTTATAAGGGTTTATATCCTATTTTGAAATGTAGTTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATAGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGGGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //