Array 1 8138-5573 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000081.1 Cylindrospermopsis raciborskii CS-505 CS505_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 8137 36 100.0 37 .................................... CTCTCATGAATCCCAGAGTGGGTTCCACTGGGGTACA 8064 36 100.0 33 .................................... GTGTTAGGGTTGGTCATGGTCTTTTAATCCTTA 7995 36 100.0 39 .................................... TATTTCCTTCCGCAATCTTCGGGCACGACGCCCCCATAT 7920 36 100.0 37 .................................... ATTTATTTCCTCCCAATCCGGATAGTAATCCTCATGG 7847 36 100.0 39 .................................... CTCCATCTCCGGGGGGGAGTGGGTCTACCTCTGTAAAAA 7772 36 100.0 38 .................................... TACAAAGATTTAGGCCCTAAAACAACAACTAGTTCTTT 7698 36 100.0 35 .................................... TCTTATCTCTTTCAGGCAATTTCATATTGTCTGGG 7627 36 100.0 42 .................................... TAGCTAACCAGGCTAGGGGGTTTTGCCGAAGACATCCCACAA 7549 36 100.0 40 .................................... GAAATACTCAGATAATGCTAGTCAGGGGCTACGACGACGA 7473 36 100.0 39 .................................... GAGACTTACCCATACTGGTGTCTCCAGCCACGATGGTCA 7398 36 100.0 38 .................................... CCTGTACCGCGCCGCCTTGGTGGAGCTTGGCTACTCTA 7324 36 100.0 39 .................................... CTATGGCATTTAAGCCATAGAAGTGAAACAACTGAATCA 7249 36 100.0 36 .................................... AAGTGGAAGTGGGAAGAAAACCCTTCCAGATTAAGA 7177 36 100.0 35 .................................... TATTAGGTTCTTGGGAGGCAATCCTTAAAGAGAGA 7106 36 100.0 42 .................................... CTGCGCCTATACTCGTATTCACTATCACTTCACTAATTTTTT 7028 36 100.0 37 .................................... ATCAGATTATTACAGACAACCCTAGTATATTGCCAGA 6955 36 100.0 36 .................................... CTGTTATATTCGACTGGAACTAGGAGATTGATTTTG 6883 36 100.0 37 .................................... AGAGAATATGTATATATCCTCTCCCCGTTAGTTTTGA 6810 36 100.0 37 .................................... AACTTTATCGGAGTGTTCCCAGAGATCCGAAAATCCC 6737 36 100.0 43 .................................... TCCATGCCGGGTACTGACCCTTTTACTTAACTACAGCCGTACC 6658 36 100.0 35 .................................... GAGAGGTTTCTGGTAATGTAAGCAACTTAAAAACC 6587 36 100.0 39 .................................... TTGTAACGGCGCTCTGGATTCCCTTCGAGAGCATTGGAT 6512 36 100.0 41 .................................... GGTCTCTTTTTACATTCTTCTTATTAAGCCCTTTTTTATAA 6435 36 100.0 38 .................................... ATCTAACCCTTGGTCGTTTAGAACATCAACTAATTGTC 6361 36 100.0 41 .................................... TAAGAAGGCGAGCTAGATTTTCGTATGCTTTTGTATAACCA 6284 36 100.0 37 .................................... TATCTGCCTTTTAAAAGGAGAAAGGGAGTTTTTTATT 6211 36 100.0 36 .................................... TCAACTCTTCAGTAATCCGCTTAAACAAATCTTCTT 6139 36 100.0 38 .................................... AGCCTATGTACTTTGTATCTATTCTTCTCCTAGCTGCC 6065 36 100.0 40 .................................... CTCCAACAACCATAGCATGATTCATTTCCATCTTGTTACC 5989 36 100.0 49 .................................... TCCCTGACACGGTCAAAAAATGGCAATTACCAAAGTTTAAGATACTCAC 5904 36 100.0 41 .................................... AATCGTGTCCTTTTGCGAACACCGTCCCGTCATCTAATAAA 5827 36 100.0 38 .................................... CAAAACCAGTTAATACGAGACGTGACATATTCTATATT 5753 36 100.0 36 .................................... TATCTCATCCGCATTATTCCAACAATCTTCATATAA 5681 36 100.0 37 .................................... TTATGGGCCCCCGCCAATGATGTCAGCATATTTTTAA 5608 36 88.9 0 ..............................A..GCT | ========== ====== ====== ====== ==================================== ================================================= ================== 35 36 99.7 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTATTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCTGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAAGTTCCATAGCCCTGCACTGACCAACATCAATTGATCATCAAAATCGGTCATACGATTCCTATATACAAAATGTACACAGTTATATCTCTTAATTCCAGAGTGAGCGTGCACACACACAACTCACTGACGACTCAGTTCTCGATTCTCCTCCTTTTGCTGCTGTGTTAACTCCTTACCTTTCAGTTTCTTGTGTGGTAAATGGACATTGACAAATTCTTTCTCCAACCAATGAAAACCCAAATCTCCCTCTATTGCTACTTCATCAGGAATGTATTGCACTATCTCTGATTCATGGAGTAGCCGTTTGTCATGCACTTTACCTGCTCTGGTTTTCGTCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1829-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000074.1 Cylindrospermopsis raciborskii CS-505 CS505_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1828 36 100.0 36 .................................... TATTTGTTCTTCTCTCTGCTATCTGTATACTCTGTT 1756 36 100.0 36 .................................... ACTCCTCAAGGGGTAATCCCTCTTGAGGTTATGGGA 1684 36 100.0 37 .................................... TCCGTTTCTTTTAGACAATCTTCACAAAGAGGAAGTT 1611 36 100.0 38 .................................... GAGTTTAAGTCTATCGTAAGTAATTCTCCTGTAATAAA 1537 36 100.0 40 .................................... ACTTAAGCGTAAAAACACAATGTAGTGTGAGTTTATTGCG 1461 36 100.0 38 .................................... TTGTTTTGTTTAAACGGTTTAAGCAGTTTAATCACATG 1387 36 100.0 36 .................................... ATCAATGCAACGGACGAGTACTACCCTTCTCGTTTA 1315 36 100.0 43 .................................... AGTTACCTCAGCTGGCTGTAGATTTATCTCTAATCTCGTTAAA 1236 36 100.0 37 .................................... CGGGTGGACTGAACCACTATACCAACTAAAATTTAAT 1163 36 100.0 46 .................................... CTTACCAAGGAGATACTCCTTTTGTTAGTATTACTGTTCCTCTCCA 1081 36 100.0 38 .................................... AGTTACTCCATTTAGGTAGAAAACCCGGGTATGAATAG 1007 36 100.0 38 .................................... CTTTTTACATCCCCTACTTGGGGTTTTTTTAGTCCATT 933 36 100.0 35 .................................... ATCAGCTATCTATTAGATCATGCTGACCAGTTGGA 862 36 100.0 37 .................................... AAAACAGGTGTTTATCGCCTAATCAGCTTGATAGGCT 789 36 100.0 41 .................................... TAATGCTCAAAGCAGTCTTTACAGGAGATTTAAGGCTCTAA 712 36 100.0 34 .................................... GCGATTAAAGATTTTGAACATGATTAACACCAAG 642 36 100.0 38 .................................... CTTTTCTTGTTTTTCAACGCGGTTGCGTTTTGTTCTGA 568 36 100.0 35 .................................... TCTGCTTTTTTTTATAATAAAGTCTAATAGTTAGT 497 36 100.0 38 .................................... TAGTCATCTGAGCCCACGGGTTTAAACCTCCTTTGTAA 423 36 100.0 36 .................................... CGCTTTTCGTTTACACAAATCCCAGACACAATTCTG 351 36 100.0 38 .................................... AAACTCTCTCAGTTGAACGAGGTTATCTTACGTCTCAC 277 36 100.0 37 .................................... CCGTACCTCAAAAACCAATAAAACAATTGAAAAATAG 204 36 100.0 36 .................................... TAATCTTGTCTGTGACAAGATCTTTGAGATTCTTAA 132 36 100.0 37 .................................... CTTAATACTTGATCTGCTGTAGGACTTGTTATACTTA 59 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 25 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : ATATCGTCATAAAGGACCAAAAGAACCTTGGTATATCTTAACGAATCTACCAAATCTCAAACAAACTTTATGCCTCTATAGATGTCGATGGGGAATTGAACAATTTTTCAAAGATTGTAAAACAGGTGGTTATAATCTAGAGGATACTAAAGTAAATGAAACTCGTTTTTTAGCCTTAGTTTTATTAATTGTGATTGCTTATAGTTTAGCCACTATGTACGGTCAACGGATGAAAAAATTAGGGATAGAGACTTATGCCGGACGGATTCAACAACATCAGGACAATTACCCACGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTCATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGCTGCTTCAGAGAGAGCTGTGGTTAAG # Right flank : GACCTCCATTTTAAGCCCTTACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 4350-3198 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000074.1 Cylindrospermopsis raciborskii CS-505 CS505_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 4349 36 100.0 37 .................................... GGAATAGGGGGGGTATAAGCGGGTTAAGAAGTACAGG 4276 36 100.0 35 .................................... GGTACTGAAGGCATAGTATTGAAGTAAATAAATGA 4205 36 100.0 42 .................................... CGTTTAGAAATCTTATAGTGGTCAGAGATATACTGCTCATCT 4127 36 100.0 41 .................................... CTTCGACTCATTAGAGTCAGTCATCGATTACTTCCCAGACG 4050 36 100.0 36 .................................... GAATTGCTGTCCATGGTGAAACAGTGGATCAGGTGT 3978 36 100.0 41 .................................... TAAAAAGAAGTATGATCTTCTGGCTCGCCAAGGAACTGGGA 3901 36 100.0 37 .................................... CTCCTAAAGAGGTAACCCCTTTTGAGGTAACTCCTCA 3828 36 100.0 39 .................................... AACCATTCAGTACAGCGAGGGTCAAATGGGTCGTTTAAT 3753 36 100.0 36 .................................... CAGAAGTATGGATTGGAGGAGTGCGTAGACTCCTTC 3681 36 100.0 39 .................................... AGAATTACCTTAGGAGCTTTGTACGCCACTTCTGGTAAT 3606 36 100.0 39 .................................... TGGAGGTTTTTGACCTCTTTTTTATTGTTGGACTTGATT 3531 36 100.0 40 .................................... GATAACGACCATGGACTACTTTGTTCTCTAAACTCTCCAA 3455 36 100.0 39 .................................... CGTTTCTCTTCTTCTTATTCTTTCGTCGAGGATGTTGAA 3380 36 100.0 37 .................................... CAACCACCCGGAAATGTATAAGTTCTTGCTCAAGAAC 3307 36 100.0 38 .................................... CTTTAGAAAGACACTGTAAGTTTGACCCTTATGAGGAG 3233 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 16 36 100.0 38 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : AAAAAAGCCACAGCCCCTGCTTCAGCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATATCAAAAATATGGTTACTGGATGGTAGCACTGGATAGAACACAGTGGAAAGGACGGAATATATTTATGGTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 138497-137860 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000064.1 Cylindrospermopsis raciborskii CS-505 CS505_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 138496 37 100.0 41 ..................................... AGAAAATTCCACTTTGACGCAGAAGAAACATACTACGGTTC 138418 37 100.0 38 ..................................... TTTGGTATCGTCTATTGGGACAATACCCAAATTTTCGC 138343 37 100.0 37 ..................................... TTATCGTTTTTACTCGTAGTTGTTTTTGCCTTGCCGT 138269 37 100.0 39 ..................................... TAAAGGAGAGTTTTTCAACATTTTCAATATCAACTATTT 138193 37 100.0 35 ..................................... AAAATATAACTACATTGCGTAGGTATATTCCAACT 138121 37 100.0 36 ..................................... TCCAGAATTGAAAAAGTTTGCGGTTGAAAATGATTT 138048 37 100.0 38 ..................................... TCCATTACTGTTGGTTTTTTTGTATCTTTGGGGGATGA 137973 37 100.0 40 ..................................... AAATAGATAGGGGTGGGATACCCGTGGTATCCCCCCTATT 137896 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : ATGCTTTCAGGGTATTCATTTAGTTGAATATAACAATGAAAAACAAGTCTCTAATTGGACTAAAGATAGAGATTTTATCTTGAATCTTTTGCCAAATGATTGTTTACGTTATTATCGATTAGTAACTTAATTATTCTCTCTACCAATTTAATTTATCATGTTTAAATGAGCTATTTGATTTACAGCTCCATTTTGCTATGTCTATAATCTTGTTTTTACCCTGGAAAAATTAGTCTATTTTATGATTTTACCTTGAATATCTTAATTTTATTTATTTGTTCACCTCTCTGGGTAATGTGAATTCTTATTGCTGCTTATTGAGAATAGATTTTGATGACATTTTTGCTGATTTACTGTTTCTCGAATGCTTTTTTCACTCTCTATGTTTATTTTTATGCTAACTTTGATTTTTATCTTAGTAATTTCCCTCCCTGATAGTTGAGGGTGCGGAATGTGGGTTGAAACACAAAAATCATAGATTGCATCATTAGATACAATGA # Right flank : TTTTTTCTTTTAAACGAGGTATCTTGTGCTACTGCAATCAAACTCAAATAGATATCAATGTGAGGTTCAAATACTAAACAAGCAAGACTAATCACTTTAAGTCGGAAGAATTTCAAGTTTCTTATTATTTCCAGAGATTGAAGAATAATAGTAAAATTGTTAATGAATTAGCAATGAGATAAAGAAATGAAATTAAAAATTAAACCGGTATATTATCAAACCAAGCTAAGAACATCAGTTCCATTTCCAGAACTGGGAAACAACATATCACCCTATCAACATCAAATACAAACATATTGTGCCATAGCTAGGAATCAAAATTATAAAACAGCATCGCAATGGTGCAATAACTGCGAGTTAGTTGAGAGATGTGACATTAATAAATTTCAGCCTTCAGACACCCATAATAGTCTTTGTATTATTAATTCAGCTATTACAGGCGGTGGCAAAACATTAGCTAACTATGCCTACTCTGTGGAACACTGTTTAAATACATCCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 39565-39375 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000063.1 Cylindrospermopsis raciborskii CS-505 CS505_62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 39564 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 39490 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 39410 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCTCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTGTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : GTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGCCAACGGGGAGAGATGTTCTTTTATGACTCTCAAGTATTTACTAGATACTAATATTTTGTCAGAGGCTAAACGACTTCACCCGAATGAGAAGGTTGTCTAAAGTCGGTAAGAGTCCTGCTTTTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 10321-8370 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000044.1 Cylindrospermopsis raciborskii CS-505 CS505_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 10320 36 100.0 37 .................................... CTGGGAATTAAAACCAAAACCCCCTAAAACTAAAAGA 10247 36 100.0 38 .................................... CTTTACTATCATTGGAAGGAAGAAGGAGGCTATGGGGT 10173 36 100.0 39 .................................... ATGAGGACTATTACCCCGACTGGGAGGAAATAAATGGAG 10098 36 100.0 37 .................................... ACGAGTCAACGCAGATTCCTGTAGCTTTAACCGCGAT 10025 36 100.0 39 .................................... GGGGGCCTTCCCAATTTGTCAGTAGAGGAATACTCAATC 9950 36 100.0 37 .................................... TGTAACGTGGATCCACGTTACACTACGGGTATCCGAT 9877 36 100.0 39 .................................... TATATTAATAATGGGGAGGCATGCCCAAAAAACTCCAAT 9802 36 100.0 38 .................................... AAAACGGGTTCAGGATATCCGTCACTGACTCATCAGTT 9728 36 100.0 36 .................................... TTAATCCAGACACACATCACACTATGTTTGCTGGTG 9656 36 100.0 40 .................................... GTATTAATCATGATTTGTCATAAAATTATTTGTTGTTTTT 9580 36 100.0 35 .................................... CGCATATACAGGAGTATGGGTTGGAGGAGTGTGTA 9509 36 100.0 36 .................................... TACCCGGTTTAAGTTTTGGGCATTGTAAAATCCATT 9437 36 100.0 35 .................................... TATGCGGATGTCATGAAGTCTTTGGTGGCACTTGA 9366 36 100.0 37 .................................... CTGAGTTTGACCCTTATGAAGAAGTAGAAGAGGAGGA 9293 36 100.0 36 .................................... TATATATCCTCCAGAGCATTATACATATTACAATGA 9221 36 100.0 37 .................................... AATCCTATCGTACATCACAGGATTTCATAACAGTGGA 9148 36 100.0 39 .................................... GTCGCACAGCCCCGGATTTTGGCAGCTTTGGTTGTCAAA 9073 36 100.0 42 .................................... TGTTCCTACTCCTCCTAAGAGCCCCAACGGTGGGAATACAAA 8995 36 100.0 35 .................................... AAGTATAATCTCCTGGCTCGCCCAGGAGCTAGGAG 8924 36 100.0 38 .................................... CACTTGAGCAGTTCGTATGCAGCGTTTATCTGTTGCAT 8850 36 100.0 36 .................................... AGGCTAAGCCAAAACCTGTAAAAGTTCCTGTAGAAA 8778 36 100.0 38 .................................... GGAGGAAAAGGAGGAAACTTCTTCCTATTCTTCTTCTT 8704 36 100.0 40 .................................... TTACGATTACCCAGAAAGACCACGCAGTAAAGACCACGCA 8628 36 100.0 40 .................................... GTAGCATCAGGAATGGGAAAAGGCATTAAAAAATTAGTTT 8552 36 100.0 39 .................................... CCGTGCGTAATTCCAGAGTTGGGTTATCAAAGAAAATCA 8477 36 100.0 36 .................................... GTATTAAGTTTAGGACAAAGTGAAAGCAGTAATGTT 8405 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 27 36 100.0 38 GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Left flank : TAACTCCTTTGCTGCTATTAAAATTCCTCTGATTGTGACAATCATTGTTTTACTTCTAAGTACAGGAGTTGATTTCCTTGCTGGTTATATTGGTGCGAAACAAGCGGGTGCTAGTAAGTGGGGACAAATTGGCGCATTTGTGGGTTTACTGATGGGATTTTTTGGACTATTACCCGCTTTACCTTTTGGTGGACCATTATTAGGTATTCTCTTTGGACCTCTATTAGGAGCAATTGTGGGTGAGTTCCTTTACCAAAGAAGATTATGGCCTGCGGTGAAAGCTGGTATTGGAATCACTGTGGGAACGCTGGTGGGAAACTTGATTCAAGGTGTCCTAGCCATCAGCGCAGTCATAGTATTTTTATTGACAACTTGGTCCCAAGTATACTGACCCACTTACTCCTGCTATATTATGACGATGATTGCAACTCTTGAAGAATTGCCTTTTTCAAGGTCAAGACTATATCGCTGCAATCCTCTTAGTCCCATAGCATTAGATA # Right flank : CCCTCCATTTTAACCCCTTACCCTGACTGGTGTCAAGACCCACTTTGCGAAGGTCAGCAAAATTTCTCTGTTTTTCACCCCTACTACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCAACGAAATAATAGGCATTCCAGCGTTTTTTCTTGACCTTCGCACTTTCTTCGTTAATTACTGATTTTTCTGTCTTTATTTTTATCATTATCCTTTACTATTACTGAAATATTTATACCGATTTTTCCCCATTTGTGCCACTATTATAACACATTTACAGGAAAATAATTCCCTAAAACTTATGTATATTTTATTTTTTTGAGACCACTTCATTCTCACCCCCCATTAGGTACTACATTGACTGGGATATTTCATTACTCGCATAAAAGTTTTTAGGTTAGATAAAATGTCGTAAAATACCTACCCAAACCCCTATCTTACCCAAATATCTATCTAAAGATAGATGTAACTATTCCCATAGATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAATACCTATTCCTTCTTATGAAGGTCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 33296-35021 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000061.1 Cylindrospermopsis raciborskii CS-505 CS505_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 33296 36 100.0 38 .................................... CTTAGAAGTACCGTATGAGGTAAATAATGAAGTAACAT 33370 36 100.0 45 .................................... CACAGTGAACCATGACAGGTTCATTATTGTCCTGTGGCGGGACAA 33451 36 100.0 34 .................................... CATAATCATAAAGAGCCTTAAAACCTTCTTCCTC 33521 36 100.0 36 .................................... CGCTTTTTGCCTTTGATGCTAATCCCAGCAAGGTCT 33593 36 100.0 37 .................................... CTTCGGTAGCTTTTGCCATTGAGGCAGGGTCGGGCAC 33666 36 100.0 37 .................................... TTATCTGTCTGGTATCCGTTATACTAATATAAATCTA 33739 36 100.0 39 .................................... GCTCACGCGAAAGCCGGGGATTGTAGTCAACACATCACC 33814 36 100.0 41 .................................... TCGTTGAGCAAATCAGAGTTAAACTTAATTGTTTCCTTCTC 33891 36 100.0 37 .................................... CATTCAATCTTTCCTCTGGTATTTCTAAATCAATATA 33964 36 100.0 39 .................................... ATATATGGACTCCTCCCGGAGTTTCCTCTACCCAGAATA 34039 36 100.0 40 .................................... CCACGAGGAGTTCGTGGCTATTTTTGACGACCCGAAACTC 34115 36 100.0 35 .................................... GAAATGGGGGGTCAATCATTTCATATAAGAATTGA 34186 36 100.0 37 .................................... TGAATACTCTCACTATGGACTCTAGTGGAGCGGGCAG 34259 36 100.0 36 .................................... TAAAGAGAGTTAGATCTATACTGACAGGTTTTTCTG 34331 36 100.0 38 .................................... AAAAATGCCACTAACCGAAACAGTGTTAGTGGCAAGAG 34405 36 100.0 36 .................................... TGCCTAGAATTTTATAGGTTGGAGTTTTAGTCCCTA 34477 36 100.0 35 .................................... TAGGAGAGAAAGAATCTATTCTATAAACCGTTTGA 34548 36 100.0 36 .................................... AAAACAATATCCTGATTCAGTCAATTGGGATATTTT 34620 36 100.0 37 .................................... GTCTACCGCTTCATCAGAATTAAAGTAATTAAAGAAA 34693 36 100.0 40 .................................... ACTATATAGTCCTCCCTTACGATAAAACAATCTATTTTTA 34769 36 100.0 35 .................................... GAATATATAGGTATAGATATACCTAACTCAGCGTT 34840 36 100.0 36 .................................... CCATCTACCACTAGGAATAGCAGTTAAATCTAACAT 34912 36 100.0 38 .................................... AAGCATGTTTTTTCTCCTTTAATTGAATAAATCAGTAA 34986 35 86.1 0 .............................-.C.GTT | C [35014] ========== ====== ====== ====== ==================================== ============================================= ================== 24 36 99.4 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : GAATCAGTTATTTTAAGGATTTTTGCGTATACTGTTTGACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCGGTAAGTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATAAGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGG # Right flank : TTCATGTAAATAAACCACAATGATTGAACCAATTCAGCGCATCCTCTGCTGTAATATAATTTACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 17390-14566 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000027.1 Cylindrospermopsis raciborskii CS-505 CS505_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 17389 36 100.0 38 .................................... CACTGCCTCCATTCGGCAGGACTAGATGGCATCATTAC 17315 36 100.0 35 .................................... ATCAAGGCTGTACTTATCTCCTGTCTTATCATTAA 17244 36 100.0 40 .................................... CTTAAAAATCTTTTTATAAACTTCTTGGCATATTTATGAT 17168 36 100.0 37 .................................... CGGTATAAATTAGACACAATTACGACTCCATCTCCGG 17095 36 100.0 39 .................................... TTAAACGTTATTTGTTTAAGTGGTAACCCGTATGACCGT 17020 36 100.0 38 .................................... AACCAACCATTTGGTTTTAGTATTAGATTTTTTTTGTC 16946 36 100.0 39 .................................... TTACTAGAGCAGGAGAAATAACCAGAGACTCGCTTTCTG 16871 36 100.0 39 .................................... AATCTGGTTTTTAATGTCTGCTTGCTGGAGAATCTTATC 16796 36 100.0 38 .................................... CTATATGAGATTCAGCCTTTTGTAACCATTTGTTCCCT 16722 36 100.0 43 .................................... TAGAGAAATCTTGTGTACATTTTGTTTCTGTTTAACAGACAAT 16643 36 100.0 37 .................................... GTAGTAGTAGTAGGAACTACGGAGGTAGAAGAAGGAA 16570 36 100.0 34 .................................... GATTATAAATCTATATTTAAGAATTACCTTTCTG 16500 36 100.0 41 .................................... GATCCGGGTTCTCGTACCAGTCCTTATCCTCAAGTTTCCAA 16423 36 100.0 36 .................................... TCTATAGCGTAGGAGGTGCAGGTCCTAATTTCTCTG 16351 36 100.0 38 .................................... GGGAAAAAACCAACGGGTGTGTACCTAGCATCCACTAC 16277 36 100.0 38 .................................... AGACCATGAAACCCAACACCATGACCACCACCATGACC 16203 36 100.0 38 .................................... CCTTGATCTGGTTATGCTTAAGATAAGCAATGATAATA 16129 36 100.0 37 .................................... AGCAAGACCTTCTAAGCTAGCGTTGACAGAGTTTACT 16056 36 100.0 35 .................................... GTGTCAGGGAAGCCGACGGTCAAAATTTTCCAGTA 15985 36 100.0 40 .................................... ATCTTCATACCTTTCGGTATGAGGAGGTTGAGGTTTTTGT 15909 36 100.0 39 .................................... AAATTCGGTGTACTCGTGGCTGGTGGGGAAGTTGATGGT 15834 36 100.0 38 .................................... AACTAGTGGTTAAAGATTACCTTGGTCTTTCTGGGTAA 15760 36 100.0 35 .................................... GATAACCAAGAAGTATGGCAGTACTTGGACGTCAA 15689 36 100.0 36 .................................... CAATAAAAGTTATCTAGAGTAGACTAGAAAAATGTT 15617 36 100.0 34 .................................... CTAAAAATATTTCTCCAAACCTATTGACATGGAA 15547 36 100.0 37 .................................... GCTAATATCACTGCATCACAAGATGGATCGTCAAATC 15474 36 100.0 35 .................................... ATATAGCGGGGACTCTAAAACCATCGTGAGATATT 15403 36 100.0 35 .................................... ACAAACGAGTTTAATTCGTCATTACAGACTAAATC 15332 36 100.0 38 .................................... TTCCATCTTATTATGAATGCATTCATGATAAGCGATAA 15258 36 100.0 38 .................................... GTATTTTATCGGAAGAGAACCACTCCCCCTTTTCGTTT 15184 36 100.0 36 .................................... GTCCAAGAGATCAAGACTGTATCTGTCTTCTATATC 15112 36 100.0 36 .................................... AACTCTTGTCCGGATACTATCTCAGCCTTTTCAGAC 15040 36 100.0 34 .................................... TTAGCTACCGCTCTGCTCCCTTTTTTCAAAAAAA 14970 36 100.0 38 .................................... AAGACCTCGAAAGTACCAGGCCTGGGTATAACTAGGGT 14896 36 100.0 35 .................................... TTACTCGTCTGTAGAGCGATAAATTATTTCTGAAG 14825 36 100.0 38 .................................... TTTTATGTAGTCAGGGTCAATAGAGACCGGGGTGTTTT 14751 36 100.0 36 .................................... TATTTTTCCAAAAGTATTGATGTCAATCTTTCTAAA 14679 36 100.0 42 .................................... TACCAACTCCCCAAACTTGGGGTGCTCTGATTGGGAATTAAA 14601 36 88.9 0 ..............................CTT.C. | ========== ====== ====== ====== ==================================== =========================================== ================== 39 36 99.7 37 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CCATTATTTCAAGGATTTTTGCGTATACTGTTTAACTAAATGTAGTTATGCGATTTGGTATTGTGTTTTATCGTATTGAGTCATAGCTATACATTTTTGTCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCGGTAAGTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAAATTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGAGGAAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGGGTTT # Right flank : GGGTGACAAAGTGGTCAAACAGCTTGTTTCATAAGGGATAGAGCCTGAAAGCCACGCTTGAAAAAGAGGCGTTTATGAGGTTTAAGACTAATTAAGCTTAGAGCTAAATCAGCCCATAGTTCCATGCCATAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACGTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACCACCTGTTTTACAATCTTTGAAAAATTGTTCAATTCCCCATCGACATCTATAGAGGCATAAAGTTTGTTTGAGATTTGGTAGATTCGTTAAGATATACCAAGGTTCTTTTGGTCCTTTATGACGATATTTTCTCTTCCAATAAACAGCGATATTAAATAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 5120-5747 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000010.1 Cylindrospermopsis raciborskii CS-505 CS505_133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5120 36 100.0 38 .................................... AACGAGTAAGAGTAGTGCTTTTACAAAAAAGTTTAAAA 5194 36 100.0 38 .................................... TTGTCTAACACCGCTTATACATTACATCATTAACATAG 5268 36 100.0 38 .................................... TAGTCAGGGGTTACGACGACGAGATCGTCACGACGAAT 5342 36 100.0 39 .................................... GATTTAGGATATTTCTACGATCCCGAACTCGTAGTTTGG 5417 36 100.0 39 .................................... TACTCTTGCATCCCTATTTAGTTTTAAGCGTTTTACTAG 5492 36 100.0 35 .................................... TTCAAAACTTTTACGTTTACGTTGTTTACCGCCAT 5563 36 100.0 36 .................................... TTGAACTTGATTGCTTCCTTTTCAAAAGGAGCAAAA 5635 36 100.0 38 .................................... TTCCTCTTCCTCTGCCTGACGGTAGAGGAGGAGGGCTG 5709 36 83.3 0 .......................CT..CGG.....A | A,T,C [5735,5741,5744] ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 98.1 38 ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Left flank : AAAGCCATTATTGCAAGGATTTTGGCGTATACTTTTTAACTAAATGTAGTTATGTAATTTGGTATTATGTTTTATGATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACCTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGCTATTTACAATAAAAATAAAATATACATAATTTTTAAGGAATTATTTTGCTGTAAATGTGTTATAATATGGGGGAATATAGGGTAAAATGGATATAAATATTTAAGTAATAAGGAATAATAATGATAAAAATAAAGACAAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCCTCGGGAACCTCGCAGCCTTCTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGAGCAAGGGCTTAAAATGGAGGG # Right flank : AGTGGTCAAACAGCTTGTTTAATAAGGGATAGAGCCTGAAAGCCACGCTGGAAAAAGAGGCGTTTATGAGGTTTGAGACCGATTAAGGTCAGAGCTAAATCAGCCCATAATTCCATGCCGTAAATCCATAATTGTCCGTAAACAGCAAAGCTAAAATCACTCTGACTTGGGTAATTGTCCTGATGTTGTTGAATCCGTCCGGCATAAGTCTCTATCCCTAATTTTTTCATCCGTTGACCGTACATAGTGGCTAAACTATAAGCAATCACAATTAATAAAACTAAGGCTAAAAAACGAGTTTCATTTACTTTAGTATCCTCTAGATTATAACCACCTGTTTTACAATCTTTGAAGAATTGTTCAATTCCCCATCGACATCTATAGAGGCATAAAGTTTGTTTTAGATTTGGTAGATTCGTTAAGATATACCAAGGTTCTTTTGGTCCTTTATGACAATATTTTCTCTTCCAATAAACAGCGATATTAAATAACCCTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCGCTTCCCTCTGGGAAGTGGAATCAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 2305-877 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000009.1 Cylindrospermopsis raciborskii CS-505 CS505_130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 2304 36 100.0 38 .................................... ATAAAGATGACAAAGTTTCCTGAACCACCTAAAGATAA 2230 36 100.0 36 .................................... CTCCTTTATTTATTGACTGATGATACATGTCTTGTA 2158 36 100.0 36 .................................... ACTATGGACTCTAGTGGAGCGGGCAGGGGATCGTAA 2086 36 100.0 37 .................................... GGCACTACAGGCTCTACAGGCTCTACCGTAGGCACTA 2013 36 100.0 38 .................................... TTCATGGATTGTTTAGCAGTGACTATTTTATTAGTCCT 1939 36 100.0 36 .................................... TATTAAAGGCTCAAGTATCCCCTACGATATTTTTAC 1867 36 100.0 36 .................................... TACTTAGAGACAAAGGAGGTGCGTCTCTTTGAGAAA 1795 36 100.0 36 .................................... TTCCGTTTTACACGATGTTTAAATGTGTCATGATAT 1723 36 100.0 38 .................................... TTTAAAAAAAAATTATTAGATTATAGAAGGAGCGAAAG 1649 36 100.0 35 .................................... ATAATGTATGGACGCCTGATCGGAAAAATAACCCA 1578 36 100.0 35 .................................... TCCTCAAGAAGAACCCATGTTCTTCTTATTAATTC 1507 36 100.0 37 .................................... GCTATAGCTGCTTTGACAGCAGCTATAGCTGTCATTT 1434 36 100.0 36 .................................... ATGTTTCAAAAGGGATGATGGAAATGGTAGTTAGCA 1362 36 100.0 41 .................................... TATCTTCTTCTGAATCCGCTGTTTGATGAAACGCTGGGTTT 1285 36 100.0 39 .................................... CACATGATCCTCCCTTAAAATAAAACAATCTATTTTTAC 1210 36 100.0 38 .................................... AGACAAAAAGTTCTGCACATTCAGGTATATAGTGATAT 1136 36 100.0 42 .................................... TTAAATCTTTCTTGGCTTCAATCTGTAAATCTGCAATAGCAA 1058 36 100.0 37 .................................... AAAAATACGAATCTCTCAACCCAATATGGGTTTTCTA 985 36 100.0 37 .................................... ATCTTTTTAGATATCTGAATTGTTGTTTCTGATGAAA 912 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ========================================== ================== 20 36 99.9 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : GTGAATAACTATCTGTTGTCTATATTGGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTGCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : TTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTGAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTGGTTTTATGCGACTTTAAAGATGCCCAGAGTAAAGGAGGAATGATTAAAGTGCGTTGTTTATTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14628-13923 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000001.1 Cylindrospermopsis raciborskii CS-505 CS505_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 14627 37 97.3 39 .......................C............. CATGATATCATATCGTGGTCTTGATTGTCAAGAGTTCTC 14551 37 100.0 34 ..................................... AACTCTTTAAACTTCTGCCACTGTAAAGTAGCAG 14480 37 100.0 38 ..................................... CTTTACCATTTGGTCTAATTGTTCATCAGACACATCCA 14405 37 100.0 39 ..................................... AGTCTCTGGGTAAAACTTGTTCATTGATAGCGCGTTTGT 14329 37 100.0 34 ..................................... TTCAGTTTTAAGGTTCTTACTAGGGCCCTACCTG 14258 37 100.0 35 ..................................... CCTGCTTAAGCAGGGGTATTTGTTCTGTTATCCGG 14186 37 100.0 39 ..................................... AGTAAAATTAGTGTGTTTAGTAGAACTAGGTGTCGTGGC 14110 37 100.0 39 ..................................... CTTGTCTGTGTATCCGGATCGGATATCGTATACCCTATC 14034 37 100.0 38 ..................................... CTTGTGAGAAAAATCTGTAGTCCTATGCTAGGATGCTC 13959 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 99.7 37 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : TGACTTTAAAAAAAGCCACTTCTGTAAATTTGGTTAATAATTCTAAAACAGTTAGTGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : TAGCGGTAACTAACAACAGAGGTGTAATTGAATCTCGTTCAAATTTCTTACCGGGTGACAAGGGGGTTGAAGATGAGATGTGGCAATAATTTGAGAAAATAAGGGGGTAAAAAAATAGGGGCAAGGGAGCCCCAAAACAACAAAATGTTACCACAATCATATCACAAAATTTTCCGAAAGCATTTGAGTGAACAGCAGTATTTGACACTGGAGATATTGTTATTATTGATACAAGCTTATCGCCAAGTAAAACTGTCAAAATTGGCGAGTTTGTTTCCCCAACCAATTAAATATGAAAGCAGGAAACGTAATTTACAAAGATTTTTAGGAATAAATAAACTCTGCGTAAAATTATTATGGTTTCCCTTGATAAAATATTGGATTAGACAATCGTTAACACCACAACAATTGAATCGAGAACAGCGCCGCTATTTTCATAAAAAACAATATCAAAAATATGGTTACTGGATGGTAGCACTGGATAGAACACAGTGGAAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 17902-18961 **** Predicted by CRISPRDetect 2.4 *** >NZ_ACYA01000086.1 Cylindrospermopsis raciborskii CS-505 CS505_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 17902 36 100.0 35 .................................... AGTTAATGCCTGATAGCGTTATGGCCATAGCTCCT 17973 36 100.0 39 .................................... GCTCAGTTTCCAATACCAAAAATATTGCAAACATCTTTT 18048 36 100.0 34 .................................... TCAATTTCTATCTGTGCCGCTAACCGGGCATTAT 18118 36 100.0 37 .................................... TATTATATTTACAAGTCAAAAATAAAACCCCGGAAAG 18191 36 100.0 38 .................................... CCGGAATTAGCACTAGTTCAAATGCACCAATTATACTA 18265 36 100.0 38 .................................... TTACTTCCCAGACGCATGGGAAGACCGCTATGAGTCCA 18339 36 100.0 37 .................................... GTCGTCAGCATAAGGATACCCCAGGGATTGCTTGGCA 18412 36 100.0 39 .................................... GATAAGGAGAGATTAAGGGCAAGGTTAGAAGTGTACCAG 18487 36 100.0 34 .................................... TTAGTACCATTGCCAAAACTGTTGTTTGTTAGGT 18557 36 100.0 36 .................................... AACGTGAATCCGTCACCATCTGCATAGACGGAATTA 18629 36 100.0 38 .................................... CGGAAACGTTTTTTCTTGCCTTTGATCGTAATCCCCGA 18703 36 100.0 37 .................................... GGTAGTTGGTCTAATAACCAGAACGCTGTTTCTCCCT 18776 36 97.2 39 ................A................... TACCTCTTTTTTGAAAGAGGGCAGAGACTGTTTTATTTC 18851 36 100.0 39 .................................... TTAAATATACTTTTACCGCTCTATAGGACTTACCTAAAG 18926 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 99.6 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : TGAATAACTATCTGTTGTCTATATTGGAGGAAGATAATAATAAACAGTCATAAGTTTATCATATATGATTAGTTCTGATTCTCTCTGGGAAGTAGAATTAGTTCCAAAAGTTTTATAGTTAAGATTTTCTCTACAGGTGGCGAATAAATAAATATTACAATATTGATATTATATGTAAATTATTAGTTTTTTGGTGTAAAGTTATTATAGATTAGGAAATTAAGGGATTATATCATTATTAAGATGAGAAAATTAGTCCAGTATTTATGAAAAGTAAAAGTAATATTAAAGACAGTAAATTAAGTGATTAACGAAAGAGATGCGAAGGTCAGGAAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ATTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTAGTTGTAGTAGCGACAGAAGAATGACCTAAAGATGTAGAAACTTGATTAATATCAGCGCCATTGTGTAAAGCCAAACTAGCATGAGTGTGTCGGAGCCAATGGGGACTGGCGCTGATACCAATTCTTTGAGAAGCAGTGCGAACAATATCCCAAACAGCTTTTTGTGTGAGATTTTTACCACCCTTGCGAGATTTAAATACAGGAGACTCATTAGTGGTTTTATGCGACTTTAAAGATGCCCATAGTAAAGGAGGAATGATTAAAGTACGTTGTTTGTTACCTTTACCAGTAATATGAACATAAGCAGTAGAACCATTATCTTTAATATCTGCCCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //