Array 1 759928-763558 **** Predicted by CRISPRDetect 2.4 *** >NC_013921.1 Thermoanaerobacter italicus Ab9, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 759928 30 100.0 37 .............................. GGTCCTACTGCTTCGATATAGCTATTTCCACTCAGCA 759995 30 100.0 39 .............................. ACAACATAGTTGGTATAGACAAGATTGCCAAGAACACCC 760064 30 100.0 36 .............................. GCTGTTCTTTTTCTCCTCAAGCTCTGCAACCTTAAG 760130 30 100.0 35 .............................. CCGTAAAAGCAGTATTGAGGGCAATTACCAAGGCG 760195 30 100.0 36 .............................. TGCTTTGAGGGAAGGTCTTAGGAAGATTTCTGCTGT 760261 30 100.0 36 .............................. CTGTCTTTGTGCAAGATGGGAAATATTCTGTTGGCG 760327 30 100.0 36 .............................. CCAAAAAAACCTCTATCAAAAGAAATTCTTATTAGA 760393 30 100.0 38 .............................. GGTAAAACAGTAACATGAGGAACTATATCAACTCTAGA 760461 30 100.0 37 .............................. GAAATAAGAATATAGAGTTTGTGAAATTTCATAATTT 760528 30 100.0 36 .............................. TAAGTTTTGGAGGAATTTTTATAATAGTGATAAAAA 760594 30 100.0 38 .............................. TTGACTTTTGTTTTAGGTGTTATTCTTGGCGTTTCTTT 760662 30 100.0 36 .............................. TTTTTTTTTCACCCTTTCCCTCGTTTACATAAATAT 760728 30 100.0 36 .............................. AGGGCTTAAGAGTGCTGTTATGAATCCTGTTTTTGA 760794 30 100.0 38 .............................. GCGATACTTCTCCGGCATCGAGAAGCCCAGGGATGTAT 760862 30 100.0 39 .............................. TGCTTTCGATCCTGTTGCTGAAGCTGAAGAGATATTGAA 760931 30 100.0 35 .............................. AAAATAGGCGTTTGGTTAGTTCTTTGGGTATTCTT 760996 30 100.0 37 .............................. ACTCTAGACTTAGAAGAAGGATCATAGTAAACATTTT 761063 30 100.0 37 .............................. AACTGGGGAAGTCTTTAATGAACCTGTGCAGGAATAT 761130 30 100.0 36 .............................. AAAGAAAAGCAGCTTTCTAACACAACAGTTAACTAT 761196 30 100.0 36 .............................. GTTATAGAGGAGGTTGTCCAATTATGAAGAACGATA 761262 30 100.0 36 .............................. TTCTAAAACATCCTTTCTATAACTTTCTAATTATAT 761328 30 100.0 35 .............................. ATTTCACAATTTGATAATTTACTTACTTCTGTGAA 761393 30 100.0 38 .............................. TAACATAAAAATCCTTTCATATTAAACAAAAATAAACT 761461 30 100.0 38 .............................. CAATTTTCTAAAATCTTCCCATTCCATTTGAATTCCTC 761529 30 100.0 41 .............................. ATCTCTGAAATACCCTACCTTGTCTATCGGCTATCCAGTAG 761600 30 100.0 36 .............................. TTATTGGGTTTAAGCATGCTTGTACGAATAAGTGCC 761666 30 100.0 36 .............................. TGTTATTGGTGATAATGTCGTTTTAGATGTGCGTAT 761732 30 100.0 38 .............................. CTCCCCCACAGCTTGAGGCTGATGATGTGGAAATAGAG 761800 30 100.0 35 .............................. ATGACTACTGTTGATTGGGCTGGTCTTTTTTCTGG 761865 30 100.0 38 .............................. CTTTTAAGGTTGCACTTTATAATCCTGTCTCTAATCAA 761933 30 100.0 36 .............................. TTTTCTTTTCCACACCTCTAAGAATACCCAAAGAAC 761999 30 100.0 35 .............................. ACAAAGAGCTAACAAAGAGCTAACAACTATCAAGA 762064 30 100.0 35 .............................. GTAAAAGCCCTTTGGGGCTTTTACTACTATTATGG 762129 30 100.0 37 .............................. TCCTATATATAGGCTTAGAAGTCTTGATGAAGTTTTA 762196 30 100.0 35 .............................. CTGAAATTGTTGAAGAATATCCTGAGCTGGTTGCC 762261 30 100.0 35 .............................. TGGGAAAAAGTATTAAGAGCAGTACTTCCTGAAGC 762326 30 100.0 37 .............................. TCTTCAAACCAATAGTCCACTTTATCTTTCACAAAAT 762393 30 100.0 36 .............................. AGTAAAAATACCTTAAAGAAAATTTACTCTATAAAA 762459 30 100.0 36 .............................. TGCTTTGCAATTTGTATTTCCATGTCGTTCACCTTC 762525 30 100.0 37 .............................. GGGTTTAATAATGCTTCCTCAATTTTTTCTGGGGTGA 762592 30 100.0 37 .............................. AAAAGTCCTTCCTCATTTTGTCTGTAATAATTTTGAT 762659 30 100.0 36 .............................. CGAGCGCAACGATAAACTTAGAATACCGCATGTTAT 762725 30 100.0 38 .............................. TTGACTACTGCTTCTTTTTGTTCAGCTATCTCTTTTTC 762793 30 100.0 37 .............................. ACAGGCCACCAACTCCGAATGGTGGCAAGGATGAAGG 762860 30 100.0 36 .............................. CTGACCTGCAACAGTTGTCCATGTTGGAGCTGTATC 762926 30 100.0 37 .............................. CGCTCGGCGAGCTCCTGGAGCATCTCCCACTCGGTAG 762993 30 100.0 38 .............................. AACTGCTGGGCCAGTCCTTCCTCGGCCTCGATTTGCTT 763061 30 100.0 39 .............................. TAGGATACATTGTTGGAGTAGCTGATAGGTGGCCACTTC 763130 30 100.0 36 .............................. GAACAAGGAATTTATACTCCAGCAACGGAGGTTCAT 763196 30 100.0 36 .............................. CCGCTTACGACGGTTTAATTTACTTAACGAAGTCTA 763262 30 100.0 36 .............................. TAGGTGAAGTACCAACCATAATTAATTGAGAATGCT 763328 30 100.0 37 .............................. TTCGCACTTCTTTTGTGTCTCTCAATGGTTCTGTTGC 763395 30 100.0 37 .............................. CAGCTCAAAGCTAAACTGCTGAAGGTGGTGTAAATGT 763462 30 100.0 37 .............................. TGTTAGAGAGCGCCGCTTTCAATCCTGTTACTGCTTC 763529 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 55 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AAGTCATGTCAAAAGCAGTTCCTGCTGGCAGTGTATATTATTATGAGATATTAGAGGGGCCAATCGATAGCCTAATAGAAAAAATATATGAATGTGGAATTTCTGATGCCAGGGCTAATGAAGGATTTGGAAGATGTTTGATGGGGGAATATGATTGGTTAAATTAATTACTACTGTTGCTATATCACTTTTTAACAACTATAGCAAGGAAAAAAGTATATAGATGTGTTTATTGAAGTGGAGCCATATATTGTAATAACGACTATAGGATTAGCGAAAAGTACATTTTATGCTGTGTTTATTATCTACAACAATGGTAATAAATTTGTCGTCGATCCCTAATAGTGCAAAAACATCTAGGGATAGACGACATTTTTATTTTGCAAGTTTTCATAAAATAATTGATTTCATTAGATATTATGGTATAATAAAGTCAGGAAACTTGACATGAATTAAAAAAGTGTAAATTATTAATGTGCTATTTATGCATGTTATAATGG # Right flank : CTTTCTATGTGGTTTTCTATCTTTTCATTTAGTTCTGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTTAAATAAAAAGTTAAGACGCTGCAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTACAGATTGACGAATAATCATATTGCGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTCGTTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCCCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTTTGGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1391700-1389801 **** Predicted by CRISPRDetect 2.4 *** >NC_013921.1 Thermoanaerobacter italicus Ab9, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1391699 29 100.0 35 ............................. TAGTGCAACTGTTAATCTTGCTGATTATCCTGCTT 1391635 29 100.0 39 ............................. CCATCGCCAATCGGCGAATGCACAACAGGAGACTCAGGA 1391567 29 100.0 38 ............................. CTATTCCCAGTGTCCACTCTTTACCCATACTCCTTCAG 1391500 29 100.0 37 ............................. CAGTTTAGTAAGAATAGGAAGAAAGCTGAAAGGGAGC 1391434 29 100.0 37 ............................. CACGTGAGATTTGGAAAAGCCTTTTGTAACTCATTTG 1391368 29 100.0 40 ............................. CATTTTGAGCTTTATGTAAAAGTTTGTGCCATCAATATCA 1391299 29 100.0 38 ............................. CTGAAATTGGCGGAAAAAGGATTGATTCCTGCCAATGT 1391232 29 100.0 37 ............................. CGAGCACCCGTGTAGTCAAAAAATGCTTTAGGCGCTG 1391166 29 100.0 38 ............................. CACATCTACATCAAAAAATATCTGTTCTATTGTAGTAG 1391099 29 100.0 38 ............................. CTTCTTCTAGCTTTAGAAACAGGTGCAAGACGTGGAGA 1391032 29 100.0 37 ............................. CACAACAAATTCTTCAAATTCCATACCAAATTTAAAG 1390966 29 100.0 37 ............................. CTGCCAAAGTCCACAGGGACACGAAATTTTTTACCGA 1390900 29 100.0 37 ............................. GTATTTTGGACAAATTTTGAAGCTATCATGAGAAATC 1390834 29 100.0 39 ............................. GTCTTTTTGATGGATGTACTGCTCTAAAGGAAGGCCTGA 1390766 29 100.0 38 ............................. GCTATTGTCTCTGGCCCATTCTAGCCATTCATTATCCA 1390699 29 100.0 38 ............................. GCCGCAAGAGCAACCAACATTATAGGCCAATGTGCAGC 1390632 29 100.0 37 ............................. GTTGATGCTGGCCTCCCGGCCGCGCTCGGAACGAATT 1390566 29 100.0 39 ............................. GTTGTTTCCGATACACTTTAATACACTTTTAATACACAT 1390498 29 100.0 38 ............................. GTAAATACATTCCCGGACCGTTCCCGCTGTCGTAATCA 1390431 29 100.0 39 ............................. GGCAAAATCGGCGCTGACGATGGCAAGCGCAGGGCAACA 1390363 29 100.0 37 ............................. GGGAAATGGACAATCCTAAATTTGTACCTATTACCTA 1390297 29 100.0 37 ............................. GCCGTCTGTCCTGCCTGAATAGAGACAGGCTCGTTGC 1390231 29 100.0 39 ............................. GGATTCAGCAGGAGATGGGGAGCACCGCTGATATGGTCG 1390163 29 100.0 37 ............................. GCTTGGACCTTTCTCCTGCATCATCATCCTCCAACGG 1390097 29 100.0 38 ............................. GCAGGAACAGCAGCACAGTTGAGACTTTGGAGCGACCC 1390030 29 100.0 38 ............................. GATAGCCTAAAAGGAATAAGCTACAACGCAAAAGTTAA 1389963 29 100.0 39 ............................. ACGTTTTAAGTGAAAATGGGAAAATAAAATGGTCAATAA 1389895 29 100.0 37 ............................. GACGCCCCGAGCAAGGCGGACGAAGCCCACCGGCAGT 1389829 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 100.0 38 GTTTTTAGCCTACCTATCCTGAAAATAGT # Left flank : ATAGGTGCAGCTTTTAACAAAGTAGTGAATTCATTAGTTGCGGATGTTTTAACTCCACTGATTGGAGCAATATTTGGAGCTCCTGATTTTTCTGCCCTTAAATTAGGACCAATAGCCATAGGTAATTTCCTTAATGCTGTTGTTAACTTTATTATCGTATCTGCAGCCATTTATTTTTTCATAGTAGCTCCTATGAATGCTATTAGACTGCGAAAAGCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAGGAAGTAAAACTTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAAGAATATTGATTAATATAAATTTGTCGTCGACCTAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTCAATTTTAGAAAATAGTTGATTTTGTCAAACAATATGGTATAATAAAGTTAAAATACTTGACAGATAAGATGAAAAAAGAAAAATTTGTTCTTTATTATATTTGATTATAATGG # Right flank : GTCTCTCAAAAAGGCAACAAAGAACTAAACCCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTTAAATAAAAAGTTAAGACGCTACAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCCCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTGGCAGACTTTTGTTTACCAGCACTTTCATTATGACCTGGACACAGCCCTGCCCAAGAACACAAATGGGCAGCAGAGGGGAACTGTTCCATATTCGTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCCTGAAAATAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 2331287-2331054 **** Predicted by CRISPRDetect 2.4 *** >NC_013921.1 Thermoanaerobacter italicus Ab9, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2331286 30 100.0 36 .............................. CCCTGCTGCTGAGTATAGCTTGCCACTACCGGGTCT 2331220 30 100.0 40 .............................. ATTATAGGCAGTGTTAGGGCTGGTACAAATGGCATACTTG 2331150 30 100.0 37 .............................. ACTCCTGCATTTCTCCTACCTCTAATTTCGGATTGGG 2331083 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 38 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACGTGAGAGTAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACTATAAGAGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCTGCATTTGCGGCATGGGAGTCTATGAGGAATTGAAACTAAATAAACCGAGACTCAAAAATCGGCTCAATGATG # Right flank : TTATCAGCGGCAGATACACCCGCCTTGATACCTACCTCGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAGAACTAAACCCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTTAAATAAAAAGTTAAGACGCTACAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATACTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCCCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTGGCAGACTTTTGTTTACCAGCACTTTCATTAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2334205-2332983 **** Predicted by CRISPRDetect 2.4 *** >NC_013921.1 Thermoanaerobacter italicus Ab9, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2334204 30 100.0 35 .............................. ATTAGTTCTATAGTATTAAAACAGAATAGGAAAGA 2334139 30 100.0 37 .............................. TAGACTTAAGACCATCAAAAACAGACCAATCAAATGG 2334072 30 100.0 36 .............................. TGCTTTCGATCCTGTTGCTGAAGCTGAAGAGATATT 2334006 30 100.0 36 .............................. TTCTGATAAGGAATTAGTTTATGATGGTTCAGGTAT 2333940 30 100.0 36 .............................. CAAATACCAGAGAGTCTAAAACATGCGATATTTATG 2333874 30 100.0 36 .............................. TATGGCATGGCAAACACCTAAAACAGACTGGACAAC 2333808 30 100.0 35 .............................. TGGATAAATGGAGTAGGTAAGAATTTCGTTGAATA 2333743 30 100.0 37 .............................. ATGGGAGGCGTAATCGCCTCTTTAATTATGCTAACAA 2333676 30 100.0 37 .............................. TGCGCAAATGTGGTATAATTATATATGAACCACTGAA 2333609 30 100.0 35 .............................. GATTCCTGCCATCTCCAAAGCGCTACACCTATAGG 2333544 30 100.0 36 .............................. GGTTCCCAACGTTCAGCTGTCCTTTGCCCGTCCTTG 2333478 30 100.0 36 .............................. TGGACGAAAAGAGTGATTAGCCATGAAGAGCCCATA 2333412 30 100.0 38 .............................. TAAAGTAGCATTATAATATAATCAGAAGCTACATTATG 2333344 30 100.0 38 .............................. TTAACGTACTTATCAGAGCATTGAACAAATTACATTGG 2333276 30 100.0 37 .............................. GCAGTTGGGATAAGTCGGAGTTATTATGGACATATAG 2333209 30 100.0 36 .............................. CATTTACACCCATGTTCTGAAGTTTATCTGCCACTT 2333143 30 100.0 36 .............................. ACAAGCTGTAAACATCTTAGCGCAGCATGAACAAAA 2333077 30 100.0 35 .............................. TTCAGCATTTTATCTGCTACTCTTATTGCATCTTC 2333012 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : GGATATGTGTATTTCCAAATTTAAACTAATTGAAGATGACTATTATAAAGTAGATGCGTTTATCGAATTGAATGAAGAGGCCAAAGAATTGTGGCAAAAATATGTTGGACTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGCTTTAAAGCTGATTTCTATAAATATGTAATATCAATACCCGCAACAGCTGAAAACATGCCTCCTGATATATGGGGTTTCAAGTATGTAAATTATGACAGTTTAAATGAATATTATGACAAAGAAACAGGTTTTATTGCAAAAGGAGTTATAAGTATATGGTAATAAAAAATGTCGTCGATCCTTAGTAGCGCAAAAATGCCTGGGGATCGACGACATTTTTTATTTTTTGGTTTTCAGAATATAGTTGATTTTATCGAACAATATGATATAATAAAGTCAAGATACTTGACAATAAATTAAAAAGTTATAAAACTTACATGCACTATTTATGCACGTTATAATG # Right flank : ACCGCTGCCTCGCCGAAAATATATCCTAGTGCAAGCGGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTTAAATAAAAAGTTAAGACGCTACAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCTCTTGAGGCAGCCCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTGGCAGACTTTTGTTTACCAGCACTTTCATTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //