Array 1 3399-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFB01000054.1 Porphyromonas gingivalis strain 3_3 isolate 3_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3398 30 100.0 36 .............................. CGAAAATAACAAAAATAGATATATTTATAAAAAAGA 3332 30 100.0 34 .............................. ACTCTTATCATCTACTATCTCAAAAGCTCTTTTT 3268 30 100.0 37 .............................. ATGAAAAACATCAATTTTTTATCATAATACCCAAGTT 3201 30 100.0 36 .............................. AGGGAGAGGATAGCCCGAGAAAGAGAAGAAAAGGCG 3135 30 100.0 36 .............................. TTGCTAACCCATCGGCGGCTTTCTTGTTTGCCGCCC 3069 30 100.0 36 .............................. TTATAAATAACGTGTTAGACCCCGCACGCGAGTTGC 3003 30 100.0 37 .............................. GCAGCGCGACAGCAAGTGATAATCTTCCATATGTAGA 2936 30 100.0 37 .............................. TCGTCTAAGTTCTCGACAATTAGGGTATCGCCGAATT 2869 30 100.0 36 .............................. CGTTGCGAACGACTTCCATCAGTTTTAATTCCTGTA 2803 30 100.0 36 .............................. TACGGCACACTGTCTACACGTGTAAAGCTATCCACG 2737 30 100.0 36 .............................. AACAGAATATAAGACCATCTCCCTCGATGAGTACTA 2671 30 100.0 36 .............................. CTAAGTTGAATATGTCTCTTGTTCAGGGGGTGTTTA 2605 30 100.0 36 .............................. CAAGAGTGTAGAAAGAATAGGTGAGAACAAAGTCTA 2539 30 100.0 36 .............................. CGGGCGCGCTGGACTTGCAGTCATCCGCAAACGCCG 2473 30 100.0 36 .............................. CATGCTCGACAGAGCGGAGGCGATGATGCGCGATAT 2407 30 100.0 36 .............................. CGTGATGCTCAAGCATCAGAGACTGCTCAGTGCTGA 2341 30 100.0 37 .............................. TAAGCATTCATCAACGAAAGCTTCGAACTCTTCATCG 2274 30 100.0 37 .............................. TATTTTCGTCGGCGTTGTGCTATTGTTCAGCGCCTTT 2207 30 96.7 35 A............................. CCCCGGATTACGTATCTCCCTCAGGGTCTGAGTAC 2142 30 100.0 36 .............................. TATTCATAAAACAATAAAATACAATGATTTACAATC 2076 30 100.0 36 .............................. ACGCGTTTTCTTATAGAGAAATTCAATCAAAAATAG 2010 30 100.0 37 .............................. AGATAGAACAGGGTATACATACCCCCGATGATTTTCT 1943 30 100.0 37 .............................. CCCCGCTATCTTTCAGCGAGTAGAACTGATAATTTTC 1876 30 100.0 35 .............................. GACGTACGAAGCAGTAATACTCAAGATAACACGCA 1811 30 100.0 36 .............................. ATGTTCCAGAGCTTCCTGACGCTGTTTGCCAGTGTG 1745 30 100.0 36 .............................. CGTAACCGCCTCGGTAGACCGCTCCGCACGGTCGTT 1679 30 100.0 37 .............................. GTGCATTCCGGACAGCTTTCGCTTAAAAAGTTAGCGG 1612 30 100.0 37 .............................. AAGAACGAACGCCTGCGCGATAAGCACCGCGAGCGTA 1545 30 100.0 36 .............................. ATTTACCTGCAGACTTGTGCCCACCCACTTGATAGA 1479 30 100.0 36 .............................. TGGTCACGGAGCGATACCATGAGTGTTTAGTAGATG 1413 30 100.0 36 .............................. CGGAGGAGATCAGCTATGCGGATGATACCACCCGTG 1347 30 100.0 36 .............................. TCAGAAAACTCGCGTCCATCTGATAGATGTACACGA 1281 30 100.0 37 .............................. GGGAAGCTGCTTTGCTCGCTGAGATAGCAGCACTTCA 1214 30 100.0 36 .............................. TTTATTGACGCCACCCCGCCGACGAAAAAAAATCAT 1148 30 100.0 36 .............................. TTTCGGTCTTTACGTTTGTCGCCACGGATACATGCT 1082 30 100.0 37 .............................. ATTGTAAATAAATTACATGGCTATTGAAAAACAAATT 1015 30 100.0 36 .............................. GATTGTACGACTTTGCTATAAAGTCTGAGTTATTAA 949 30 100.0 38 .............................. TTGCTACAACTTCAACTTTTCTCTTATAAAACTTTTCT 881 30 100.0 38 .............................. TTGCTACAACTTCAACTTTTCTCTTATAAAACTTTTCT 813 30 100.0 36 .............................. TATCAACAATCACCGTCATATGTGTAATATACTTGA 747 30 100.0 36 .............................. GGGCAGGCGTATTGCCCCACTTCTCCCCGAATGCAT 681 30 100.0 36 .............................. TGAGGAATCATATCAGTGTTTATTTTTTCATCGATT 615 30 100.0 36 .............................. TCTTGGGAGGCTTCAGGGAAGAAGTGCTTCGTTTTG 549 30 100.0 36 .............................. TCTTGGGAGGCTTCAGGGAAGAAGTGCTTCGTTTTG 483 30 100.0 36 .............................. CTGTCTTATCAGTTCGTCCTCTGTCAGCTTCGCCTC 417 30 100.0 36 .............................. CTGTCTTATCAGTTCGTCCTCTGTCAGCTTCGCCTC 351 30 100.0 34 .............................. CGATCCCTACATCAAGCTCAGAAAGAACGAGAAC 287 30 100.0 35 .............................. TGCTCGCAAGCTCTGTCTCTAACCTTCAGAGCGAT 222 30 100.0 36 .............................. AGGGACAGATTTATTGAGTAATGGAAAAGGACGCAA 156 30 100.0 36 .............................. AATGGTTTCTAAAGATTGTTTCTAACTTTTTATCGT 90 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 51 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TGTTTTTAATACTCAAATATACAAAATAACTCCCTATTATACAATGAATTAACAAACAAAATACACACCAATCGCCGTGCAAAGGTCTCCATATAT # Right flank : TAATATCTCGCTAACTATATTAGTTTTCATCGTGGTTGTTTTAATTCCTGTATGGTGCAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 91741-92700 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFB01000036.1 Porphyromonas gingivalis strain 3_3 isolate 3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 91741 36 100.0 30 .................................... ATGATAATAGAATAAAATATTCTTTTTTGC 91807 36 100.0 29 .................................... CGTTCGAGAAGTTGGACGAATGGATCGAT 91872 36 100.0 30 .................................... TGACGCGGTTATTGAGTTCTTTTCTATTCT 91938 36 100.0 30 .................................... TGGGGAAACGCTCTGATAGGATCAGAATGT 92004 36 100.0 30 .................................... AATTGTTCCATTATATCGTGCTTATTTGAA 92070 36 100.0 30 .................................... TTTAGAGTGGTTTCTAATGCTTCTAGTTTT 92136 36 100.0 30 .................................... TACCGAAGCCACTGACCCAACTACATTATT 92202 36 100.0 30 .................................... TTGTCATAATATTTGTTGTTTGTATTGTTT 92268 36 100.0 32 .................................... ACTTTCTATCTTCATTAAAGAATGCTACACCT 92336 36 100.0 30 .................................... TCTTCGTTTTTGCCGCACGGGCGTTTCTTT 92402 36 100.0 30 .................................... ATGATTCGCTATTTTGTCCCCGTTGCGGGA 92468 36 100.0 29 .................................... CATGCTGTATTTTTATTATCATACTGAAA 92533 36 100.0 30 .................................... TTCATCAAGAATTTGTTTTGTTAGAGTTCG 92599 36 100.0 30 .................................... TTAGTAGCAATAACGAAGAAGTGTCTTAGC 92665 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 15 36 100.0 30 GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Left flank : CAAAGCTACGTTGGATGAAGTCAAGACTTTGTTGGGCGAATATGATCGCTGCCGCATCAAAATCTTCGATTGGGCATTTGCACTCGAAGGAGCCATCATGTCTGATCGCGACTTGAAGCCGTATTTGCACGAGTCGTCGAGCAGGGAGGGTAAGAGCGGAGAGCATTCTACACTGGTGAAGATGCTGGTGGAGAAGAAAGGCTGTCTGACTCCTGACGAAAGCCAATACCTGATTCTGATTCGCAACAAGGCTGCTCACAACCAATTTCCCTGCGCTGCAGAAATGCCTCTTATTTACCGAGATGTGAGTGCAAAGGTCGGTAGCATTGAGGGATCTTCTGCCAAAGATCTGCCGGAAGGTAGTTCTCTGGTAGATTCATTATGGAAAAAATACGAAATGATAATTCGGAAAATTCTTCCGATTCTCGACCCTGAAAATAGATTTTTTGGAAAGCTTTTGAATAATATGTCTCAACCTATCAATGACTTATAAAGGGTCG # Right flank : CTATTATTCCGAAAGGAGAAAGAGGGGAAGTTGTGCTGTTGATGGGGAAGTATTTCTAAATTAGCGATCGCTAAAGTGATGGAAAATGGATAGGGGGATCGTGTTCGGAGGAGAGGGTTGTAGCCGACAGTGTTTGTGTGCAGCTATCCATTCGATCGGGAGGCCTTTCGTTCTCTTCCTTGGCTTTTGTCCGTAAATACCGATTCTTTTAACTCATATAATTGTTTGTTCCTATCAAACGCTCTCATCTCCTTATCAGTGCTGCTTCATCGGGTGGTGGAAAGACTACTTTCACGCTCGGATTGCTACGATTGCTTCGAAGACGCGGTCTCAAAGTGCAGCCTTTCAAATGCGGTCCCGACTATATCGATCCTAAGTATCACCGCCTTGCATGCGGAACGGAAACGGTGAATCTGGATGCTTTCATGATGAGCCGGGAGCATATCGCCGGACTCTATGATCGCTATGGCTGCGAAGCCGATGTTTCCATCGTAGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATACCCTTAGTTAGAAGGGTGGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1614-1866 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFB01000002.1 Porphyromonas gingivalis strain 3_3 isolate 3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 1614 38 100.0 35 ...................................... AATAAACAATACTGTTATTAATATTGTTTTAAAGA 1687 38 100.0 32 ...................................... CGCATGCGTACTCCCGTCCTCTGAACTCTATC 1757 38 100.0 34 ...................................... TCAGATTTTTTTCTGAAAGAGATCTTAAAACTTC 1829 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 99.3 34 ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Left flank : TTTTCTTCCTCTCTGTCAGCATTGTTACACCGCTGCTTGGATGAGCGGACATCCGACCCTCCCTAAGAGCCGGAGAAAAAGGAAAAGTATTGTGGTTTAGTTTTTTCGAAAAAAATCGAACCTCACATCGCTCTTTGACGTATTGATTATCAGTCGGTTGCAAGAACAACTCTTTTCTCCTGTTTTTCGAAAATAGGAGAAAAGGAGAATTGGGACTTTTATTTTCGAAAAATAGAGGCTTTTCGCTATTTGTAAGTGTTTGATTATCAAACGGTGTCTTTCTCTATTTTTCGAAAATCTAAAAAACGAAGGCTCCCTCTTTCTTATTTTCGAAAACAGAAAATCAGGTAATCTCATTGTATATCAATGAGATATAATCAGCTCAACTGCAAAAATAGTGTTGTAGCTGCATTTCTCAACTTGTATTTTCGAAAAAAATAGAATCGTTCTCTGCCAATGCGTTACGTTTGGGATTATTCGTAACTTGCAGTCGCTCAAGT # Right flank : CACTGATTACCGAGGGTTAGAACGAACGCATACACAGAGTGTTCTGGAAGCGATGGCCTACAATCTTAAGCGCATGCCCGGGCTTCTTGTGCTCTATGGCATGAAATAGACGAAAAATCTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGTAAAGGGAGAGTCCAACCGATAGAAAAACAACAGCAAACAACTCAAAACATCCTTCGTATTCACACATCTACGAGGATGCCAAACGCACAAGCAAGCGAGTTGTGTAGCGGTCTTATAAAAGTGGATAACGGACTCTTTGGAGAAGACTATCCATGCTCTGAAAAACGTGGCGCGGGAACTTTTTCGTTTTGGTTCGGGAAGTGAAAAATTCTCGCGCCACAGCGAAAAAATTCTCGCGCCGCTTTTCCCGAAAACACGCTCCGCAATCCGAGCATTTCCGGTCTGTGAACTTCGGAGAGGCGGATTTGTCCGAAAAGGAAAGTTCGGTCGTTTTCGGGGGGACAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCACTATACATACACAGTCCGTAAGGCTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 107090-105739 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFB01000023.1 Porphyromonas gingivalis strain 3_3 isolate 3_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 107089 30 100.0 36 .............................. TCTATTAAAATAATAACAATTATGAAAAAATTCAAA 107023 30 100.0 36 .............................. GTGCAGAACAAAAAGAAACAATAAGAAAGTTTCTCG 106957 30 100.0 36 .............................. TAATTGATCGGATTCCAGCCCAACTTGCGACACGTA 106891 30 100.0 36 .............................. TATGTCCCAATCACTATAGACGACTTCTATAGCGAT 106825 30 100.0 36 .............................. TCGTCTATGTCCCAATTTCCTTTTTTCATTAGCCAT 106759 30 100.0 36 .............................. GGGCTTTCTCGTTCATCTCCTTTACTCTCTTGCCGA 106693 30 100.0 37 .............................. AATGCGGCAGGGTGGCCGGTGAGCGTCCACTTCAACT 106626 30 100.0 35 .............................. TAACTACGCCAAGCAGCGCAACATTCAGCTGCCTG 106561 30 100.0 36 .............................. TCATTACCTCATCAATATCCTTGTTTACATCTTGCA 106495 30 100.0 36 .............................. TGCACTCCGTGGGGCTTAATCTCTATCTTATCCCTG 106429 30 100.0 36 .............................. AGTAGAAGCATTCTTCAATGAATGCTACTACTATAC 106363 30 100.0 36 .............................. CAAGCTCGAAGGTTTTTTTCCCTTTTTCGCCTCCGA 106297 30 100.0 36 .............................. ATATTTTTCATTGAATTTATCTATCATAGTAATAGA 106231 30 100.0 37 .............................. TCGTGCATTCGCCTATTGTGCCTGTTCTTACTACATA 106164 30 100.0 36 .............................. ATTCTCCCATCTTCGAGAGGACGGCCGAGTCCGCGA 106098 30 100.0 36 .............................. ACTCGGCTCGGATGGTAGTCTCCATCCAGCTGATGA 106032 30 100.0 36 .............................. TCTCAGCGTAGCGCAGTATCAGGCGCGCCTGGTGCT 105966 30 100.0 36 .............................. GGGCGGCGGAAATGCCATTGCAATTTCTTTGTCATA 105900 30 100.0 36 .............................. TCATACTATTCCGGAGTTTCTTTCGAAGGGAAGCAA 105834 30 100.0 36 .............................. GTGTTGCCGGGGCGCGACTACAAGATCGACCACCCA 105768 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ATTCCTGTATGGTGCAATTGAAATACGATTTCTATAATGTGATAAATGGAGACTTCTTT # Right flank : CCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATAACAAAAGGCTTGATGAATTTGCTCGAATCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCTGGCTGCTCTACTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAGCATTTTGCCAACACGCTTTTCCCCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 26118-25884 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUFB01000057.1 Porphyromonas gingivalis strain 3_3 isolate 3_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26117 36 100.0 30 .................................... AAAATAATCACACTTATATAATATGGCAGT 26051 36 100.0 30 .................................... TGCTACCGTTCGGGCTTGGGGCAGTGCTAC 25985 36 100.0 30 .................................... CATTGGCGGAATATGTGTTGGAGGATCTCT 25919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGAATGCAAGCTGATTTGATATAAATCGGACACCTCGAAAGACCTTTAAGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCGATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATTCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCGCTGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //