Array 1 1798380-1795793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028289.1 Acidovorax avenae subsp. avenae strain AA99_2 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1798379 32 100.0 35 ................................ ACCCTGTCGCAGTCCGAGCTGAGCGGCCCCGATGC 1798312 32 100.0 35 ................................ CGGCTGTGCCAGAGAAGGCCGACAAGTGGGACATC 1798245 32 100.0 36 ................................ ACTGTGGGCTGGGCCCGGTCCGGTAACGCGGATGCT 1798177 32 100.0 36 ................................ GGTAAGGCCAAAGAGCAGCTCGATGGCATCAAGTCC 1798109 32 100.0 35 ................................ GCCGCCCAGCGAGCAGATCGGCGCCACCGCGCTGA 1798042 32 100.0 34 ................................ ACACTCGTGAGCTTCAACGGGTGGAAATACGATA 1797976 32 100.0 35 ................................ GACACGTAAGCAGCGATCTTCGCAATGCTGCGCGG 1797909 32 100.0 35 ................................ CTTGAATAAGTAGCTACGGCCAAAAGGGCACGTAA 1797842 32 100.0 41 ................................ GTCTTACGGCGGCGACGGCGAGCCGGCAGCGGACCTGCAGA 1797769 32 100.0 35 ................................ GTCTTCCTGGCCGTCGAAAAAAAGGCCCCGCACGC 1797702 32 100.0 35 ................................ CTGGACGATCCGCTCCCCGTGCTGGAGCCGGTAGT 1797635 32 100.0 35 ................................ GTGCCGAACGTGGAACCGTCCATGCTCTGCTGCGC 1797568 32 100.0 35 ................................ TCATCGACCCCATCGGCATCCCATATGCCGAGCAC 1797501 32 100.0 33 ................................ GATATAGGCCCCTTGCTGCATGGTGAATGCGAG 1797436 32 100.0 35 ................................ GTTTTACGAAGATGACCCACGCCACGCGCAAGAAG 1797369 32 100.0 34 ................................ GCTGAAAGCGGGGCGGCATCATGAGCGGCGACCA 1797303 32 100.0 36 ................................ ATGGCTGGCAACCAGTTGGGCAAGACGAAGGCGGGC 1797235 32 100.0 34 ................................ ACGGTGAAGCTTGCGAAAGCCTTGGTGACGTCGG 1797169 32 100.0 34 ................................ GTCCGAGGACAGCGCACCGTCCTGCCCGCGCTCG 1797103 32 100.0 36 ................................ AGCGGGAAGGCATCGGCGTCCGCCTGCGGCGCGGTG G [1797081] 1797034 32 100.0 35 ................................ AGTCAACACAAGACTGAAGCGTTTGAAAAATACCA 1796967 32 100.0 35 ................................ CTATGCGGCAAACGCGATTACTCGCAAGCCAACAG 1796900 32 100.0 35 ................................ TACGCGATACTGGTTGCTCCGTGTATCTGTAAAGG 1796833 32 100.0 35 ................................ GCTCACCGGAATGACCGAGCCGCCGCAGCGGTTGC 1796766 32 100.0 35 ................................ GATAGTCCCAGGAGAATACCCGCCGGAAATCGTGA 1796699 32 100.0 35 ................................ TGCACCTCCACGCCGATGGACGAAGTTCCGGGAGT 1796632 32 100.0 36 ................................ TGCCACCCCAGACTCGAAATCCATCCGCCCGCGCAT 1796564 32 100.0 34 ................................ AGCGATGCTTTCCGTGCGTCCTGGCTTGCAAAAA 1796498 32 100.0 34 ................................ TGCAATCAGCAGGGGATCTCGCTGGATAGGAGCG 1796432 32 96.9 35 .........C...................... TGCCGCACGGGATCAGGGGCGGGGCGGCCGGGCGG 1796365 32 96.9 36 .........C...................... CCAGCGAGGTGAGGCATGAAGAAGGCGAAGCGCTCC 1796297 32 100.0 35 ................................ CAGATGTCCGGCCATCCGGGTTGCATCTGCGCCTC 1796230 32 100.0 34 ................................ TACATCGGCGACACGAAGGAGAAGGGCCTCGAAG 1796164 32 90.6 34 .........C.C.T.................. GGCGCACATCGATAGGCAGAGCTTCGCGCGTGGG 1796098 32 96.9 35 ............A................... AGGACCTGGCTGCGCAACGCCGTGAAGTTCGGCCA 1796031 32 87.5 34 .A...A...C.C.................... CGCATGCTGGCGTTCAGGACCTGCTGGAACTGCA 1795965 32 96.9 35 .......A........................ GACCTCATGATGGCGCTGGTGTCCGCCGGGCTGGC TACGC,G,AC [1795944,1795950,1795953] 1795890 32 90.6 34 .........C.G.T.................. TCGGACCTGGTATCGGTCGCCGGCCACATCTACA 1795824 32 90.6 0 ............C...T.......A....... | ========== ====== ====== ====== ================================ ========================================= ================== 39 32 98.6 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : CGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACGGGGCTCGCCCCCGGCAAGAACCCGCTGGCCGTAGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGAGTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCCCTTCCGCTCCCTCCCTTTCCTTTCTTCCTTCTTTTGCCGGGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGGCAAGTGGTTGAGGGCAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGATCGGTTGGGGTGGGTTCGCGGATGTGTGGGGGAAATGGCTGGGGTGGCGCGGGTTTATAAAGGTGCC # Right flank : AGCACGAAGGCCGACGCATCGAACCGGCGCACCGGGTCGCGTGCGCTCCGGCGGGCGCGAGCATTGCGCCACGCCCCCTACCAGTCAGGTTCCAAAACAGGATTTCCTGTCGGGAAACTGGCCTCAGTACTGCAACGCCGGACGGTCCAGTGAATCCAGGCGCATGGCGTCTTCCAGGATCGCTTCCGTCAGCTGCGGAGTGCTGGCAGGTCCTTCGCTCAGCCCGTAGGCCTGCTGCGCAGCATCGGCTGCCAGCGCATGCTGGGTTCGAGGAGAGTACTGTGCAAGCTCCTGCCGCGTACTCTCGGCCAAGGCAGGATCAATAACCGGCATCGTAGTGAAGATGGCGCCGGGTGTCGGATTGCGAAGACATTCGGCTTCCCATTGCTGCGCCGTAGCATGCAGCGAGGTTCGCGGGTCCTCGATCTGCGCCCTGACGGCTTCCATCCGCGCCAGCGCGTGGGTGGCAGCGGGCTTGTCGAAGTGTTCGAGCACCGCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4456873-4461721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028289.1 Acidovorax avenae subsp. avenae strain AA99_2 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 4456873 32 100.0 35 ................................ AGCCCGTCGCCGTCCTCCTGGACTAAGGCGAAATT 4456940 32 100.0 34 ................................ TTGCCCCGAATCTCGCTCTCAAGCACCTCGTACT 4457006 32 100.0 35 ................................ TCGGTAGCATCGCGGGCGGTCTCACCGGCCTGGGC 4457073 32 100.0 36 ................................ CGGCCGATGTGATGTCCGTCGGCCGGCTGCTGCACA 4457141 32 100.0 34 ................................ GGCAGCTTGTGGCACGCCACATGGACATGCATGG 4457207 32 100.0 36 ................................ TGACGCGCAGGTGGCGGCGCGACTCCGAGCAAAGCA 4457275 32 100.0 33 ................................ GTGTCGTCGCTCATGGACGCCATGGTCACCACG 4457340 32 100.0 35 ................................ GCAATCAGCGCCAGCAATGGGCACAGCGCTACCAG 4457407 32 100.0 35 ................................ GTGGGCCCGGCCCGGACGGGCAAGACCGCCGGCCT 4457474 32 100.0 34 ................................ ATTCGGCGGAGGAACAGCGTGAGGCGGCCCGCAA 4457540 32 100.0 36 ................................ ATCCGTTTGTGCATCTTGATCACCGCGCTCTGGCTC 4457608 32 100.0 36 ................................ CACTGCGAAGTCGATCTGTCGGAAAACTCCGCAGGC 4457676 32 100.0 33 ................................ GTTTGCTCCGTCGATCAGCGACACGAATGGTGC 4457741 32 100.0 34 ................................ TTGATGACATCGCCATCCTTGAAGATCGCATCGG 4457807 32 100.0 36 ................................ GATGGCAGCAGAGAACTCCTTGGCCGAACCGCTGAA 4457875 32 100.0 34 ................................ AACCAAATTTTGGGGCGCGCTACGTATGTCACGG 4457941 32 100.0 35 ................................ CTGCACGGTGGGGATGGCCTCTGCAGCCGCTTCGA 4458008 32 100.0 36 ................................ GTGGACACCGTCCCTGCTCGCCACTGATCGCTATGT 4458076 32 100.0 35 ................................ ACTGTGGGCTGGGCCCGGTCCGGTAACGCCGATGC 4458143 32 100.0 36 ................................ CCGCGCAGTTACGCAGCGAGACGTAGGAGCGCTGCC 4458211 32 100.0 35 ................................ CTGAGCGGTGGCAGGGTCGGCCGCGTGGGCAGCGG 4458278 32 100.0 34 ................................ AGCGGGGCTCCGGCCAACGCCACGGATGCCGCCC 4458344 32 100.0 36 ................................ CAGGCGCGAATGCGGGCGGGGGGATGCCGGCGCTGC 4458412 32 100.0 36 ................................ TTGCCGGTCATTGCGTAGTCGGTCATCGAACAGTAC 4458480 32 100.0 35 ................................ CTGATCAAAAGACGGTGGAGGCGCCTTCCTAGCTC 4458547 32 100.0 35 ................................ TCGTTGACCTTGAGGACCTGGATGAGAGAAGTAAG 4458614 32 100.0 34 ................................ GCGCTGTGTAACCGCGATTGGTCGCGCATGGGCT 4458680 32 100.0 34 ................................ GTCGCGTGACGGCGGAGCTCAGGGCCTTTGAGAT 4458746 32 100.0 35 ................................ GCCGTGGAGCAGGTGCGCAGGTACGGGGGGGTACT 4458813 32 100.0 35 ................................ GCCGTGGAGCAGGTGCGCAGGTACGGGGGGGTACT 4458880 32 100.0 37 ................................ CGCCGTTCAAACCGTCGAAAAAATCGAGGGCCAAATC 4458949 32 100.0 34 ................................ CAGCGCTGAAGTCCGGCCGCAAGGTGGTAACCAA 4459015 32 100.0 35 ................................ AACCGCTGCCCCATCACCATCACGGGCGGCGCAGC 4459082 32 100.0 34 ................................ GCCCTTGGGCTTTCGCTCTTGCTCTGGGTGTCGT 4459148 32 100.0 34 ................................ ACCACATGGTGTTATTCGCAGTCAACACCCTATG 4459214 32 100.0 34 ................................ CGCCACTGCATCCGCAATCACTGCCTCTCGGCTC 4459280 32 100.0 36 ................................ CTCTCGGACTTGGCCGCGGCAGGCGAGAGGGCGAAC 4459348 32 100.0 34 ................................ TGCATGATGTAGTAGCAGTCCCAGCCATGCTTAC 4459414 32 100.0 34 ................................ ACCGTTCCCGTTGTGGGCTCGATCGCCATCGGCG 4459480 32 100.0 36 ................................ CCCGGCACGCAGCTTGTCGTAGGAACGATCGCCACG 4459548 32 100.0 35 ................................ ATGATGTACTTCGATACGTAAGCAGTGATCTTCGC 4459615 32 96.9 35 A............................... GACCAGCGTGGTGCCGCCCGTGGATGCGGTTTCCA 4459682 32 100.0 35 ................................ ACCGACTCCAGCACCTGGCCGTAGTCGTAGCGACC 4459749 32 100.0 35 ................................ TGTGGCCATTCGCGTTCCAGTGCTGATCAACTCCT 4459816 32 100.0 34 ................................ TCGAAGACGTCAACGCTCGTGCGCTCGGGAACTG 4459882 32 100.0 36 ................................ AAGCTTTACCGAAGTGCTGAGGTGCACACAAAGCAG 4459950 32 100.0 35 ................................ ACGGTGCGGCCTGGGGCGATGACGATCTCGTCGCC 4460017 32 100.0 36 ................................ TTCGATCTGGACCGCGAACTCTTCAAGCGCGCGCAT 4460085 32 100.0 35 ................................ TCACGCTCGGCTATCGCGTAGTCGGCGGCGCAGTC 4460152 32 100.0 35 ................................ TCCTCATCCGTCGGCGCGCCGCCTGCGGCGTTGCT 4460219 32 100.0 34 ................................ ACGGTGCGGCCTGGGGCGATGACGATCTCGTCGC 4460285 32 100.0 35 ................................ GTCGGCAAGAAGCACAGCGCGGACGCGCTGTTCAC 4460352 32 100.0 35 ................................ GTCTGCTGCCTGTCTGCTGCCGTCCGTTGCGGTGG 4460419 32 100.0 36 ................................ ATAGCTACGACGTATGTCTGCGTGGGCGGCCTGCTT 4460487 32 100.0 36 ................................ GCCGACCACCCGCGCATCTACGTGCCCTTCCGCAAC 4460555 32 100.0 35 ................................ CGCGTGCCCCAGTCCAATCTGGTGGTGTTCGATCC 4460622 32 100.0 34 ................................ AGCTCCATCAGGTTCTTGAGGTGCTTCAGGGTCG 4460688 32 100.0 36 ................................ GAGGGCGTGCTGACATTCACTGCCGCGACATCAATC 4460756 32 100.0 35 ................................ GAAGACATGACTGCAGGACAGGGATACCGGAAGGG 4460823 32 100.0 35 ................................ ATCAAGCGCACGCTACCTGCGCTCGACCCGAACGA 4460890 32 100.0 34 ................................ GACGAACTGCGCGAGGTCCGCGCACCGATGCTCA 4460956 32 100.0 34 ................................ ATCCGCTGGTTGGCGAGCTTGCCCGACCAATAGC 4461022 32 100.0 36 ................................ TGCACCATGCTGAGGCCAGCCCAACCACGCGACAAC 4461090 32 100.0 34 ................................ TCGAACGTGAGGCGCTGCTCGACGCGGCGCCGCC 4461156 32 100.0 33 ................................ CCCTGAGTTCTTCGCCGTGCCATAAGCCAACCC 4461221 32 100.0 35 ................................ TTGGACATGATCGCTTACGCCGAGGGCACATCCGG 4461288 32 100.0 35 ................................ AATAACTGTACGGCCCGCATCACGCACGAGCTGTC 4461355 32 100.0 36 ................................ GGCGTCGGCGACATCGTGCTGGACTCGACCAACCTG 4461423 32 96.9 35 ........G....................... GACATCGAGGCCAAGGTCGGCGACAAGGCCAAGGC 4461490 32 96.9 35 ........A....................... GAGGTCGAAATCCGCAACAAGGACCGCGACGTCCT 4461557 32 96.9 35 ........................A....... TCTTTCGGCGTCCTGCTCAGGGCTGCCTTCCACCG 4461624 32 96.9 34 ....................A........... TTTCTTTTGGCTGCCCTGGCCGGCCTCGGGCAGA 4461690 32 90.6 0 ....T...............C...A....... | ========== ====== ====== ====== ================================ ===================================== ================== 73 32 99.7 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CTCGTCAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAGGCCCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAACGACTGGCAGCGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCCCCTCCTCTTCATTCCTGCAACCATCCGGCGCGAACCGGAAGCAACTGCCTGCGCCCAGGGGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGGATTGTGGGACCGTGAGCGGCTTTGCCCGGCGAAAGCCCTGCTCTATGGGCAGGTTCGCGCGCGTTGGCGGAAATTTGGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : CTCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACGCTCCCGCCTATCGCCCCAGTCCGACATCCACCCAGCCCCCCTCCGCTGACACTGCCCCCATGCCACTGCACCGCCGCACCCTCTACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCGGCAGCCAGAACGACAATCCAGAGGGCAACGCCAACCCCCTCACCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTGGTCGTCCCTCAGGAAAACGCCCCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCGGGAGCCGGCCTTGCGCGAAGGTTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTTGCCGGCCAGGGGTACCGCAATGGGGCGCCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGGACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //