Array 1 165368-163386 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBO01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2722 NODE_2_length_409518_cov_4.21534, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165367 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 165306 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 165245 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 165184 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 165123 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 165062 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 165001 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 164940 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 164879 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 164818 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 164757 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 164696 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 164635 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 164574 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 164513 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 164452 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 164391 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 164330 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 164269 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 164208 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 164147 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 164086 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 164025 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 163964 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 163903 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 163842 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 163781 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 163720 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 163659 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 163598 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 163537 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 163476 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 163415 29 100.0 0 ............................. | A [163388] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 185103-183000 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBO01000002.1 Salmonella enterica subsp. enterica serovar Kentucky strain BCW_2722 NODE_2_length_409518_cov_4.21534, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185102 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 185041 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 184980 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 184919 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 184857 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 184796 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 184735 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 184674 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 184613 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 184552 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 184491 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 184430 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 184369 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 184308 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 184247 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 184186 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 184125 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 184064 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 184003 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 183942 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 183881 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 183820 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 183759 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 183698 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 183637 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 183576 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 183515 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 183454 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 183393 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 183332 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 183271 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 183210 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 183149 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 183088 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 183027 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //