Array 1 2263-2535 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONF01000027.1 Escherichia coli strain SC353 NODE_13_length_160924_cov_143.108_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2263 29 100.0 32 ............................. CTATGATTGAGTGGATAAGGGAACATGCGGAT 2324 29 100.0 32 ............................. CGCTCGATATCGCCGCAGAATTCTGGCTGGAG 2385 29 100.0 32 ............................. TGATCCGGGTGTCTAACGAACTGCTGAGCGAT 2446 29 100.0 32 ............................. ATGGGTGCATTCTGTTTGGTAATTACGGAAAA 2507 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28094-29587 **** Predicted by CRISPRDetect 2.4 *** >NZ_QONF01000027.1 Escherichia coli strain SC353 NODE_13_length_160924_cov_143.108_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28094 29 100.0 32 ............................. GAAAGTTTTTCCCTTTCTGTATGACCGCAGAA 28155 29 100.0 32 ............................. TTCTCATGCAGTCGCTGCTGGTAGCCGAACAG 28216 29 100.0 33 ............................. CGATTATGAGTTTGCCGGAGAATAGTTACCTGC 28278 29 100.0 32 ............................. CCGAGAAAGACGGCGAGTAATGCAAGGGCGGC 28339 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 28400 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 28461 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 28522 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 28583 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 28644 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 28705 29 100.0 32 ............................. GTGAGGGCCAGCCATTCGCGCTGCACGTCGAT 28766 29 100.0 32 ............................. CCTGCTGCTGGCATGATTCGCGCCGATGAGGA 28827 29 100.0 32 ............................. CGATTGATTACCTCCACCGCGAAATTGAAGCC 28888 29 100.0 32 ............................. ATCCAAACGTATCAATAACAATAAGCGAAGAC 28949 29 100.0 32 ............................. AACGCGATAGCCGCGCCGAAAAAGTCGGTGAT 29010 29 100.0 32 ............................. ATTATCCGCGAGTTCAGATCCCCATAGTAGTG 29071 29 100.0 32 ............................. GCTTTTGAATCTTCATGGTGGCGTATGCAGGG 29132 29 100.0 32 ............................. CGAGCGCGAGCCAAGTTTATGCGGTGCTGACA 29193 29 100.0 32 ............................. CGGCGACGCAAGCACAATACCGTTACCCTCAT 29254 29 100.0 32 ............................. TACAGAAAAAAGAGGCATCGCATGTCGCCATT 29315 29 100.0 32 ............................. CATTGATTTTACCGTCTATAGTGATTGTTGGG 29376 29 100.0 32 ............................. ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC 29437 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 29499 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 29560 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //