Array 1 183819-184528 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVS010000004.1 Campylobacter concisus isolate 2012-164712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 183819 37 100.0 40 ..................................... TTGTCTCCGTTCATTTGTAGAATTACTACTTGTGCCATGA 183896 37 100.0 41 ..................................... TCATCGCAGCCCGCGAAACCGACAACAGCACGACTATTAGG 183974 37 100.0 34 ..................................... GCGCTACCTATCCCTGGGTACCCAAAGAATGCGC 184045 37 97.3 34 ......................A.............. GGATTAACTGAGCGAGAGCCTGATGCTTGTGGCC 184116 37 100.0 40 ..................................... AATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 184193 37 94.6 39 ......................TT............. CATTATCTATCTCTATGGTTTGCAAATCCATCTGTTTGT 184269 37 94.6 37 ....................G..T............. AACTCAACTTCAAGGGGCACAGCTTCGATGTATTTAG 184343 37 97.3 38 .......................T............. ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 184418 37 100.0 38 ..................................... ATTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 184493 36 89.2 0 .............................GC.-...T | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 97.3 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTCCATAATCCATATATAAATTTAGGCCATTTCGCTTACATAAAAATTGTAAATCTTTTTGCTGTCATTTTTTGTGACGTATCTTGTCCATGTTTCATTTTAAATTGCTGCATATTTACAAAAGGAAGAGTAATGAAAATAATAGCAAGAGATGTGATAATAGTGGCATCTATCAAAAGAAACATCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAAGATCTATATAAGAAAGCAAAAGCGTTTAAATTGTCCTAAGCTTGAATAAGTCTATTACCAAAAAACACTATGATGCCTACTCAAATGTGATCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTATAGTCGTCAGCACTTTTTATCGTAAAAGTATTTTTCGCAATTATTTTTTTACACCAGTGATATTATCATTTATGATAACTTTTGAGTAGAAATATTTTAATGTGAGCTTGGTATTTTTAAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 46352-47204 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPVS010000007.1 Campylobacter concisus isolate 2012-164712, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 46352 37 100.0 37 ..................................... CAAAATCGCATTAAACATTGCTCTTTTTCATCAAAAT 46426 37 100.0 41 ..................................... AACTCTGATTTTGCACTTTTAGATAATTTTGCATTATCAAC 46504 37 97.3 34 ................................A.... AGCTCACTTTGTAATAGGTCGTGAGGCATTGGTT 46575 37 100.0 39 ..................................... TCATCGTAATAGTCTGCGTGCTTAGTTTCTCTATTCTTA 46651 37 100.0 37 ..................................... GATGTTAGAAATCAATTTATACTTAAAGGAAAAATTT 46725 37 97.3 39 .................T................... CAGATCTTTCGATCTTCCCTCCGTTCATTTCTAATATAG 46801 37 94.6 38 ..................T.................T CAGATGTTTGCAAGTAACGGCGCGGCAACTCTTTCGTC 46876 37 100.0 38 ..................................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 46951 37 91.9 37 G.....................TT............. TTTAATGCGATCTTTGATCCGTCGCTAGCGGTTTTTA 47025 37 86.5 25 .......................GC..TA...T.... AAATTTGACCCGATCGCGGTTTTTA TTTT [47053] Deletion [47087] 47091 37 100.0 37 ..................................... GATGTTAGAAATCAATTTATACTTAAAGGAAAAATTT 47165 37 94.6 0 ....................C...............A | C,AA [47195,47197] ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 96.8 37 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : CTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTTGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : ATGGTAAAGCGTAGGCGCTTTATGTTGTTATTTGTAAAAATAAATGAGTGGTGCTTATATGCGTTTATTGGATAAATTTAGATAAGAATAGATTGGCTTAGATTTATGAAAAACTACAATAAAGATAGGTTTTTGCGATTTGCGTAGATAAATAAAAGATACGAAAACGAGCCATGAATTTTGCTTCATGGCTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAATGTGCCCTTAGTGGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGATGAGCACGAGCAGATGAGTAAGACCTGCTTGAAGACGATGAAGAAGACTTTGAATAAGAACGTGAATAGCATTTTGCCATTTTAACCCCTTTGTGTTGAATTATTTTGTTTTGTTGGGTGAATTATAAAGTGGTGTGTGGACATATTGTGTATAATTCTTAATAACTTTAGAATATAAAGGATAAAGTAATGGACGCCCAAACCAGGATAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //