Array 1 74976-73283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUDG010000003.1 Paenibacillus sp. alder61 NODE_3_length_329648_cov_51.397829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 74975 32 96.9 35 ...............................C CACGGCCTGTGGGGCGATCCTGCGTATGAATTCGA 74908 32 96.9 34 ...............................C TAGTAGAATCGGGCTGAAAATGATACGCCTGTTT 74842 32 96.9 34 ...............................C GACTGTAATCCATTTCAAGCGCAGCAGCTTGCAG 74776 32 96.9 35 ...............................C AAACTGCTGAATCTGTTGGAAGCTATTACGCCCGG 74709 32 96.9 35 ...............................C ATGCTAAGGTCATTTAATAACACAGCGTTATATAC 74642 32 96.9 32 ...............................C ATCAATGAACCCGGCCTTTACAGTTTGATCTT 74578 32 96.9 36 ...............................C TCTGGATTTCTTTATTCCTAGCACTTACAAGGTTGA 74510 32 96.9 34 ...............................C ATGCAGGAAATCAAGGCGCTGTTGATCAAGTGGA 74444 32 100.0 35 ................................ ATCGAATGACCATCCCAACCGAATGTACTCGTCGC 74377 32 100.0 33 ................................ GGCACGAACGAGGTCTCAAGGAATACGTCCTCG 74312 32 100.0 34 ................................ AATGTGCAACAGCCGGGCAAAAACTCACTTACGT 74246 32 100.0 33 ................................ TATTCCCAGTAGGTTGTTGTTGCTGTTGTTTCC 74181 32 100.0 35 ................................ GTCCAAGTCCAGATACATGCATTCCACCGTATGAC 74114 32 100.0 34 ................................ ATCCGTCCAATACCAAAATTGATGGAGACCTGGG 74048 32 100.0 35 ................................ AGCTATGCAAGATTTGGGAGGCCAGATTACCTACA 73981 32 100.0 36 ................................ ATAATCTCCTAATTCATTATCAATCACATCAATTAC 73913 32 100.0 34 ................................ TTGGCGAAATATAATACGGAGACGTCCATCAATG 73847 32 100.0 36 ................................ AAAATCAGCGCTGGTCAGTTCTTTCATGCCCTCCAC 73779 32 100.0 33 ................................ CGCAAGGCGAGCGACCGCATTCGTGTACTTTTT 73714 32 100.0 35 ................................ TGAGCCAGTTGCGCCCGCTCCTCATTTGCCTGCTT 73647 32 100.0 36 ................................ CCCAACAAGGATGCAGGTCTTGCTTGCGGTTACCGC 73579 32 100.0 35 ................................ AGATATACCGACCAACCCGTGATTTCGTTGTATAC 73512 32 100.0 33 ................................ GATCAACTGGATTGCATACGGGGAATGAATAAT 73447 32 100.0 34 ................................ CGGTTTGGCGAAACCCGCCAATTCCATAATTTCC 73381 32 100.0 35 ................................ GGGAACAAAGTAATTTCAAATTTAAAATCGACATG 73314 32 68.8 0 .............AC.A.......TAG.CTTC | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 97.8 34 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : GGATGAGTACCCTCCATTTTTATGGAAGTAGGTGGATCGGATGCTGGTACTGATTACTTATGATGTAAGTACCGTTGATGCAGCAGGGCAAAGAAGACTACGTCAGGTTTCTAAAGCATGTCAAAATTACGGACAGCGTGTTCAAAACTCCGTATTCGAGTGTATCGTGGATGCGGCGCAATGGGCGACACTAAAAATCAAGTTGATGGAACTCATTGATCCGGAGCAAGATAGCCTTCGATTCTATCAGTTGGGCAATCAGTATAAGAATAAAGTGGAACATGTGGGAATCAAGGCGGCCCTCGATTTGGAGGGCCCCCTCATTCTGTAGTGCGAATGTGAAGCGAACATGATTTTCCCGGGGGATTCGCACTAAGGAATATACTTAATTTTCCATAATGTTCAGCTGATTTGACGTATGAAGGGAGAATATTTATCAAATAAAGGATAATAATTAGCAATATTTTCATATCATTACTTATTTTATGCCGAAAATCGGA # Right flank : TTATCCAAGCGAAAACTTGACTCCGCTAAAATCATAATCCCGATACCTTCCCCTCTTTAGGAAACGCCAACTCGTTTCCCGGAGGGGTATTTTTTTGGCAAAAATTAATTCACGCCGACAATATTAAAATCCTCTAAATTTATTCCGATAAAGACTTATTGCATATTCACACTTAAAAAAGGGAAGGGCGGAGACAGCAGGGATTTACAGACAAGAGGACATCGGAACGTAGTGAGAGATGGAACGTCGCTAAAGTTTATTTCATCCAAGAAGGAGCAACCCAGAATTGAAAAAGGACAAATGGTTATCAGCGGTTCTATCTTTCGTATTGTCGGCAAGCTTTGTGCTGACCTCCGCTTATACGGGAACGCAAGTTGCGTATGCAACGGGTTCAATAGTTAATGTAGACAGTGTGGAAATAACCGGAGATGTTGAGGAAGTGTACGTGGGCGAATCCGTGCAGATGACCGCCCGAGTGCTGCCGACCAATTCCACAAATC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84971-83541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUDG010000003.1 Paenibacillus sp. alder61 NODE_3_length_329648_cov_51.397829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 84970 31 100.0 38 ............................... AATGTCTGATCCGTTGTTGATTAATATATAAAGTTGAG 84901 31 100.0 36 ............................... GGGCCGGGTGCTTTGTCCATATCGAAATCGAAGAAG 84834 31 100.0 34 ............................... CCCCGGGGTATTATTACGAAGATAATGTATACAG 84769 31 100.0 35 ............................... ACTGACAACTCCACCACGACCATCATCCGCAATTG 84703 31 100.0 34 ............................... CATATTGGGCTGTGTGTATATTACCGTAGTTTCG 84638 31 100.0 35 ............................... TTGGTCTTTTTGGCTATTACCTACGCCAACGAATG 84572 31 100.0 36 ............................... ACCACCGCCGATGCTTTGTCTCCGGGAAGAATATTG 84505 31 100.0 36 ............................... ATCAACCCATACTGTGACATCTTCCAAGTAATAGAG 84438 31 100.0 35 ............................... TATACTCGGCTGGGCGTTTCGTTCGCTGATGGATG 84372 31 100.0 37 ............................... AACATTCAGACGGAAGTGTTTCGGGATACAGTCCTTG 84304 31 100.0 35 ............................... TGATAAGACCATAAGAGCTAACCATCCTTGGGTCG 84238 31 100.0 37 ............................... CCAAGTAGCCAATGCGCTGTATATGTCAGGGACAACG 84170 31 100.0 35 ............................... CATAAATCATTCCGGTTTTGCTCTTTATAATACCG 84104 31 100.0 35 ............................... ATCAATGCACCCGAGGCACTCCCCTACTGGCTCCG 84038 31 100.0 34 ............................... TTCGAGGCATATGACGAAGTACCAGAGGAATGGG 83973 31 100.0 37 ............................... CACAGCTAGTGGGGCATCGTTAAATAAAAATCTAGGG 83905 31 100.0 37 ............................... TTCATAGAACCAAATACCTCGGATTGATCGGAACAGG 83837 31 100.0 37 ............................... ACCTATCAAGGTATCTCCAATTACGGCGGTACGCGAG 83769 31 100.0 36 ............................... ACCGATGAATTTTCCGAGTGAGCGTGACAGTTATCG 83702 31 100.0 35 ............................... ATATTCTCGGTCATGACCTCAGCCACTCGGCCAAG 83636 31 100.0 34 ............................... ATATTCCAGCGTGTGGATAACAAAGTGCTTTGCG 83571 31 90.3 0 ...T......................A...A | ========== ====== ====== ====== =============================== ====================================== ================== 22 31 99.6 36 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : AGTGGGGGATTTCATGGGAATCTCCCAACCTAGTTACTAGTTGCAGGTTAAACGTTGCTGACGACATTCACCATGTAGATATAAAGCCCCACCGTTGGAGTCTATACGCTTAACCATAAATAACGGGAAAACCTCCAGTTAATTTACCGATCTTGACCTTTGGAGCCAATTTAACTGGAAAAGTTCCATCTATTTCGCGACCTAATGGCCGATATACGCAATTTCGGTCAAATTAACGGGAGTTTCTCCAGCTAATTTGCCTCAGCAGCCGCTTAGGCACCAAATTAACGGGAGGAATTCCCGTTAATGATAAAGCGGCATATCCTTTTGGTGCGAATGTGAAGCGAACATGATTTCCTAGGGGGATTCGCACCAAATTATTTTACTTTAGTATCCTTATTTTCATAAAATAAACAGAAAAATTAATCACTTATTTGTTTAAAGTAGTGATTTTGTAATTTTTAAAGCGACATTTTAACAGTATATGTTAAAACACGCTG # Right flank : ATAAATCGTGACCAACCAGCGTAACGATTAACAAGTGCTCCACCAGACAACTTTAACTAACATAGAATTCCTGCAAATCTTCATCCTTTGGAGTTGAAAGAACGGCAGGCACCTTCATTATTTAGAATTACAACTTGGGTGTCAGAGTCGGGAGCTTCTCAACTTTTGCTAATACTGTCATGACGCTTCGGACGCAAAATTTAATACTTTTAATAAGGCAGCCCGGCAGGGCTGTTCTTTTTTTAACCAATAGATGTGCACACAACATGGGGACTGACGACACACACTTGAAAAAAAGAAATATTCATAGAATAATGTAGAATTTTGGAAGGGAAATGGGATAGTTCTGCAGAAATACTGAATAGCGGCTGAACGAGTCGTTTGAACTATTTCTTGAAAGGGGGAGCGGGTTATGGAGTTTATCGCTCATATCCGGGAAAGCGACCGGGAACGGCAACCCCTGAAGGCCCATTTGCACGGAGTTCGGCAACTGGCGGAAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 176392-175892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUDG010000003.1 Paenibacillus sp. alder61 NODE_3_length_329648_cov_51.397829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 176391 32 96.9 37 ..........A..................... CTCATCGTCGTCATCGTCATCTGGAATCATTGCCCCA 176322 32 100.0 34 ................................ GATTAATCTCATGAGGGCCAACCCGGAACATATG 176256 32 100.0 34 ................................ AATAACCCCGTCGCCCTTTGGCGTTATATAGTCA 176190 32 100.0 37 ................................ AAAGCCCGCGGGCTGCTCGCCTATATGCTCTCCAAGC 176121 32 100.0 33 ................................ TCTCCGCCGACGGCGTAAGAATAAGGAGGTTTA 176056 32 93.8 35 ........T.A..................... AAAGATCAAATTGATTCGTTTGTTAAGAACCAAAT 175989 31 93.8 35 ..........A......-.............. CCACTCAATTGAACTGGAGGGAAACGTCATTGATC 175923 32 96.9 0 ..........A..................... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 97.7 35 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : GCAAGCAAGAAGTGTCCACGCTTAAAAAGATTGTCAGATCCATCGACAAAGCCGCGTTTCTCACCATCCACGATGTGCGGGATGTGTTTGGAGAAGGGTTCCTGGATATTTCGAAGTAGGAGCATGTTTATTAAATATGGGGTCGAGGACGTTGAGCCGGCAAAAGAGTAAGGTGGGATAAATCGCCAATGGGCGATTCCGGCCAATTCTCAAGTGATCATGCAGGCGTTAAGGCTTTCTAAAAAAGGGGATTTATATTATTTTGGGAATAGGGTGAAATCTAGACCTTCTTAAATATAGGTGTCGACCTTAAAGGAGAACGCACAAATGGGTGCGATATGAAGCGAACATGATTTTCCTGGGGGATTCGCACCAAGGGAATTACTTTATTTTACATAAAAGTTAGTTGATTTTATGTGAAAGAGAAGAAGATCTGCTGATTGGAAAGCCTGTTTTTACAGTATTTTCATTTTGTGGCTTATTCTATGTTAAAAATCGGA # Right flank : ATGTATGCTTTGGCATCTGTCGCCCCTTCAACAAAATCGCACCCCTACTCGGGTGCGACTGAAATGTACAATAACAGCATGAGACTGTCCACATAGGGGCAGAACATGGCCTCCTGATCCGCATGGCGCGGAAAGGAGGCCATTTATTTTTCCGTGCTTGGAATGAAGCTATCTGCCCGGTAACCCTTTCATCTGCAAACGGGTTCAGGCGAAGAAGGAGCAGCATTCTCCGGCCGGGGTTTGGTCTTAATGGTGGAATCCGCTGCTCCATCAGACAACCTTGTTTTACATAGAATTCCTGCACAATTGTATTTTTTCTGTTGGATCAAAATTTCCGGACTAACACCCTGCTGCTTTCGGCGGAGCCCGCCCCCTTTGATAACCGGGCGGGTGGATAAGAGCCATTTGCGCCGCTATTTTGTCGAATTCGCCCTTTCGGTGTGAAATAGGGGTCCTTTAAGGCCTTATTTTTGGAAAAAGCGGGCCGAAACCCAATTTTG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCTATGCGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //