Array 1 171740-173450 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNZ01000003.1 Escherichia coli strain MOD1-EC6229 MOD1-EC6229_3_length_289447_cov_69.6546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 171740 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 171801 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 171862 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 171923 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 171984 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 172045 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 172106 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 172167 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 172228 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 172289 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 172350 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 172411 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 172472 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 172533 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 172594 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 172655 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 172716 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 172777 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 172838 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 172899 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 172960 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 173021 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 173082 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 173143 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 173204 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 173265 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 173326 29 79.3 5 .................AAT.C..C.G.. GCAAA G [173349] Deletion [173360] 173361 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 173422 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 188952-190080 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNZ01000003.1 Escherichia coli strain MOD1-EC6229 MOD1-EC6229_3_length_289447_cov_69.6546, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188952 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 189013 29 100.0 33 ............................. TTCTGCTGCTGGTTTGAAGAGGCGCTGGCACGC 189075 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 189136 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 189197 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 189258 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 189319 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 189381 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 189442 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 189503 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 189564 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 189625 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 189686 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 189747 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 189808 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 189869 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 189930 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 189991 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 190052 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTTATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //