Array 1 55996-57163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVME01000026.1 Pasteurella multocida strain 306_PMUL 155_130121_5395961_118+,...,69_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55996 28 100.0 32 ............................ ATACAATTAGCAGTAACAGTAATGTACTGTAT 56056 28 100.0 32 ............................ ATAATTATAACAATATCAATAGGTTATGATTT 56116 28 100.0 32 ............................ TTAATAATTGCACCGTCTGAATATTTTTTTAT 56176 28 100.0 32 ............................ GTAAAAAACTTTAGTGCATTTAGTGAATAAAG 56236 28 100.0 32 ............................ TTAATAATTGCACCGTCTGAATATTTTTTTAT 56296 28 100.0 32 ............................ GATGACAATGGGGGCTTCCGAAAGTTGAGGAT 56356 28 100.0 33 ............................ AAGTTACATTTAAGAAGAAAACAATGAGCAACA 56417 28 100.0 32 ............................ ATAAAGGCAGCGTGTCACCCTCGTACACATCA 56477 28 100.0 32 ............................ AATCAGAAGCTATAGGCTTATTAAAACAACTT 56537 28 100.0 32 ............................ TAGTGGCATACTTTTATTGATAGGCGACAAAT 56597 28 100.0 32 ............................ TAATTTACAAAAATCTGATATTGGAATGCTTG 56657 28 100.0 32 ............................ ACTAAATGCCCCCCCTTTGCCATCACCATAAT 56717 28 100.0 32 ............................ ATATTGTTGTTCCTACAATATCTTCTGTTATT 56777 28 100.0 32 ............................ AATTAAAAAAGGATAAGTGATGGAAAAATTAA 56837 28 100.0 32 ............................ ATAAAGGTGTATTTTGACTCTGCATAAAATTC 56897 28 100.0 32 ............................ TAATGTCATTAGAACTTCTACCATTAAAAATT 56957 28 100.0 32 ............................ TAAAATAATCCCTAAATTATTTTCATATTTTT 57017 28 100.0 32 ............................ ATGTACCTGAACCATTCTTCGGCACACAAAAA 57077 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 57137 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.1 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCGCGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAATACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTCAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATAAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATATCTAAAAAAAGGGTTTTTGTATATAAAATGTGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCATA # Right flank : ACGGAAAATAAAGCATTGGATACTAATTGTTGTGTAAGCCAGTTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGACAAAAAGACAACCGCTCTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAGTGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCTGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCTAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 102783-104190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVME01000026.1 Pasteurella multocida strain 306_PMUL 155_130121_5395961_118+,...,69_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102783 28 100.0 32 ............................ TATTAGCCAATCTTCCTTTAATACTCCCCCAT 102843 28 100.0 32 ............................ AAATTTCCAAAAAGATTACAAGAATCTACACG 102903 28 100.0 32 ............................ ATCTCATTTTTCATCTCTTGCAATGAAAATAT 102963 28 100.0 32 ............................ TCGGCCCGTGTAATAAGTAACATACTCACCAT 103023 28 100.0 32 ............................ ATTAACTGAACTAGTGTCTACATTTCTTTTCT 103083 28 100.0 32 ............................ ATAAAAATTTAAATTTTCTCTTTGTAAATATC 103143 28 100.0 32 ............................ AATATGATTATTATCTTGCTTAAATATTAATC 103203 28 100.0 32 ............................ TAATAAACTTTTACTAGGTTCAAAACCAAATT 103263 28 100.0 32 ............................ ATGTCATGGTCGTTTAAAGATAAAACAGGTAT 103323 28 100.0 32 ............................ ATCTGTGTTAATTGATCTTTTTAATGTATCAA 103383 28 100.0 32 ............................ TAAATATCTCTTATCCGATTCCTGTTTATTAT 103443 28 100.0 32 ............................ TGTAAATATAAATTAAACTATTTTCTTGGTTG 103503 28 100.0 32 ............................ TGACACAGGAAAAGTGGAGGATGAGCAGTTTA 103563 28 100.0 32 ............................ TGCGTTAAACCAACCTTCAGGTAAATCATTTG 103623 28 100.0 32 ............................ CTCGACTTGTTCAAGATACAAGATTAATCAGC 103683 28 100.0 32 ............................ ATTCATCGTACATTCATATCTGTCTGGTAATA 103743 28 100.0 32 ............................ AATTCACAGAGACGTCACTTATTTATCAGAGT 103803 28 100.0 32 ............................ TTTTCTCTGGGCATAAAAAAAGACCTTTCGGC 103863 28 100.0 32 ............................ GTGCTTATTGACGTTGTTTGTTGCGCAAATAC 103923 28 100.0 32 ............................ GGAGCCGGGAATGCCCACATATGCAGTAATTG 103983 28 100.0 32 ............................ GTTATCTTGTAATTTCAATTGATAAAGAATTA 104043 28 100.0 32 ............................ TGGGGAGCTGACACAATCAAAAGCGATTTACA 104103 28 100.0 32 ............................ ATGTCGGATTGTCACCAAGCCAAGTTGTCATT 104163 28 85.7 0 ....................T...T.TC | ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.4 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACAATTATCACAAGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGTCGTGTGCATCGTAAAGGACAAAGTACGATTCGTCGTACAGAAAAGTTCCTGAAGAGTATTGACAAATGGCGTGAAGGGATTCGTGAAGAAATGCAACAACGCCAGCAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGCACAAATCAGCGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACTGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAACTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTCTTA # Right flank : CTGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //