Array 1 1123132-1127193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049266.1 Campylobacter concisus strain P1CDO3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1123132 30 100.0 38 .............................. TCACTCAGGGCAAAGCTCAAATAAAAAATCATTTGTTC 1123200 30 100.0 36 .............................. AGCTCACGCACTAAAGTGCCTTTGTGGGTATATAGA 1123266 30 100.0 35 .............................. CAAATCAAAAATCTATCTACAAAGCTATCAATATC 1123331 30 100.0 35 .............................. TTCAAAAAGTCTTGTTTTTTCAACTGGTAGCGACG 1123396 30 100.0 36 .............................. GACTGGCTATCGGTTTGTGAAGAAGAATACGCAGAA 1123462 30 96.7 34 ..C........................... GCGGCATCAACAAAAAAACTACTGCTAAGCAACG 1123526 30 100.0 36 .............................. AAAGGGATAGTATAGGTTCTTGTTTTAAAATTTATA 1123592 30 100.0 36 .............................. AGCTAAGAGATTGTAGAAAAGAGCTTTTTGCTCTTG 1123658 30 100.0 37 .............................. TTATATAATTCTCTTATAAAAAGTTAGAAATACTAAC 1123725 30 100.0 39 .............................. CAACCATTTGGAAAGCAAGTTATCCTTAGATAGATTCTG 1123794 30 100.0 36 .............................. TATGTTAAATTTTGCTGTTTGCAAAATTCTTTTACG 1123860 30 100.0 35 .............................. CTTTTAAAGATGGTAAAGATCCAAAAACTATGGAG 1123925 30 100.0 36 .............................. TAATTCCGACAATACCAAGCCAGTTTGACGTCAGCG 1123991 30 100.0 36 .............................. GCATCTGGCTCGAGAAAGTCGTATTTCTTTGACAAG 1124057 30 100.0 37 .............................. CAAAAAATCCATGTAGTCCAACCTGCTCTTTTAGATC 1124124 30 100.0 35 .............................. CTTTGAACACCTATGATGAAACCTCGTTGCAAACA 1124189 30 100.0 36 .............................. AAAGTAAATGTCATATCGCGACATCCACGAGAAAGA 1124255 30 100.0 36 .............................. CGAGCACCCGCAGGATATACAAAACCGCCAGGATTT 1124321 30 100.0 34 .............................. ATTCGCTCAACTTGATTGGATTAATAATTTCTAG 1124385 30 100.0 33 .............................. TGGATAAGCCAAATCAAGGAGCATTCGCCAAAA 1124448 30 96.7 36 .........................A.... AACCCTGCAAAAAATAATGGATCACCATATTTCCAA 1124514 30 96.7 36 .........................A.... ATAGGGGTGACACCCTTGTCACTACACGGTGTCATA 1124580 30 96.7 40 .........................A.... ATAACCCTGTGAAAAACTATCCTAAATCAGGGCTAATACC 1124650 30 96.7 36 .........................A.... GTTTTGTAGTGCTATCGTCGATTTCCATATTCCAAA 1124716 30 96.7 38 .........................A.... GTTTGTTATATGCCTCTAGGCTGTTATTAGCTATCATT 1124784 30 96.7 37 .........................A.... GCGATGGTGGCGAGACTATTCAAGATTTAAATTTATC 1124851 30 96.7 36 .........................A.... AAATCATTAAAACATCAGCAGCTGAAGTAAGAGCAG 1124917 30 96.7 35 .........................A.... TGGGAATAGCAGGATATAGAGCGCCACAAATCAAA 1124982 30 96.7 36 .........................A.... ACTCGCTTGATGTGCTCGTTTCGTCACTAGATGCTA 1125048 30 96.7 36 .........................A.... TCTCATCACACTCAGTTATTTTGCCTTTTATCTCGT 1125114 30 96.7 37 .........................A.... TTTTACGGCGTAAATGAAGTAAAAGCAGTAAGATTTA 1125181 30 96.7 35 .........................A.... TAGTTGACATTTGCAATTATGTTGTTTTGAGTGAT 1125246 30 96.7 38 .........................A.... GGGCGACTATTGGTAGCGGCAAAATAAGCGATCAAACA 1125314 30 96.7 38 .........................A.... GCACTACCTGCTTGCTTTCGCAGCCCGTCAAGCACATA 1125382 30 96.7 35 .........................A.... GTAGGCAAAAACAAATAATAGAGATAAAGGCTAGT 1125447 30 96.7 34 .........................A.... ATACAAAGGGCACTTGGCGGTTTAGTTCGCTTAT 1125511 30 96.7 36 .........................A.... TAATCAACGTGATCAAAATTTAAGATAGATGCGATA 1125577 30 100.0 36 .............................. CTCCAGTAGAATTATCAAAATTATTAGGTCACTCCA 1125643 30 100.0 33 .............................. GAAAGTCTAGATTTTTTCAAAATGTATCAATTA 1125706 30 100.0 39 .............................. CAAAGAGATTTTTAGACTTAATGGCTGGGATTTTACCGT 1125775 30 100.0 36 .............................. CTAGAAAATGTAATCGAGCAAAAAAAGAGCATTGAA 1125841 30 100.0 35 .............................. AATACTGGCACTTGAAAATTATCAATCGCAAATGA 1125906 30 100.0 36 .............................. GTAAAAGCATTCGAACAATCAATGCAACCGCCTTGA 1125972 30 100.0 36 .............................. TTTTCAAGATTATTTGCCCTGATAATAACACGGCTG 1126038 30 100.0 36 .............................. ATAGTATTTCGCCGCCCTCTGCATTGATCACGCTAG 1126104 30 100.0 38 .............................. CTATTTGATCCCATAATCCTCAAACGTTAGCCCTTTAT 1126172 30 100.0 38 .............................. TTTTGAGGACCTAATGGACTACGAGGCGAGCGAATTGG 1126240 30 100.0 37 .............................. AACCAATGTCTTTATATTCATAGCTATCGGTTTTTTG 1126307 30 100.0 36 .............................. CTAATTCAAACGTCATTAAAAACGATGATAGCGCAT 1126373 30 100.0 34 .............................. ATAACTCGAACACAATCATTAAATTTTTCTTTTG 1126437 30 100.0 35 .............................. TTTCAAGTGGCGAAAGTATGAGGCTAAGGCGCAAA 1126502 30 100.0 37 .............................. TAACGTTTCCAGCTCCATTTGTAGCTTCAGGGACAAA 1126569 30 100.0 34 .............................. CTGGTAAAAATCAAGCAGGTCATAAGGCTACATT 1126633 30 100.0 36 .............................. TAGCGCTAAGATGCTTTAAAAACAAAGAAGTCTTAT 1126699 30 96.7 38 ....A......................... AAAATGCCCTTGGCGAAAACAGCGGCGAAATAGTTGAT 1126767 30 100.0 37 .............................. TTTTCCTAAAAATCATAACAAGGGCAAGCCCCTTTAA 1126834 30 100.0 37 .............................. ACATAAGCCTATGAAAACAAAAAAAATAAAATTAATC 1126901 30 100.0 36 .............................. AACATTGCCGTCTTGTTGGTAATTCTGAGCTCTGGT 1126967 30 100.0 35 .............................. GCGTTGATGGGCTCAAAATAAGCTCATAATAGCTA 1127032 30 100.0 34 .............................. ACATAGCCCCGAAAAGGTGTTTCGTCCAAACGGG 1127096 30 100.0 38 .............................. GCAGTCGTTAAACGTGCAATGCTAGCGGCATTTTTAAC 1127164 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 62 30 99.0 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGAGCCTTGAGCCTACATCTCGATCTAGCGGAGATTTTTAAGCCGATCTTGGGCGATACGCTTATATTTAATATGCTAAATAAAAAGGAGATCACCGCAAAAGACTTCCAAACGGACGCCGGCAGGATAAAATTTAGCAACGATGCCGTGCAAAAGATCGAGCTAAAGATGATCTCGCGCCTTTGTGAGACGCTCACAGTGGGTGGCAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAGGCAAATAAGCTCAAGAAGTGCATCTGCGAGGATGCGCCTTATGAAGGATTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAATACTTGAAATTTAGGGCTTTGCGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAATAAATATAGACTTCTTGCACCAAAAGGCCTATAGATCAGCTTTTTAGTGCT # Right flank : CAACGCAGAAGCGACAAATTTAAAAGCCAAAGATTTTCAGAGAAGAGATTTAAATAATATAATTGATTGCTATCTTGCAAAGATGTATCAAACAAACGATAATATTGTTTTATGCAGATACTTCGAAAAACCAAAACCCCAGCAAATACAGCAAAAAAAGAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACAAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGTTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCGGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAATAGTCTTCTAAATTAAATTTAGTAAATTCTTCTTTCATTTATAATCCTTTAAAATTTCTTTTGCTTTTTTAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAGAATTTACTCCGTTGGAGTTTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1628612-1625592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049266.1 Campylobacter concisus strain P1CDO3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================ ================== 1628611 33 100.0 47 ................................. TCGTTTAACTCTGGATGGAATCTATCTCTCTCATAGAATTCGAATCT 1628531 33 100.0 39 ................................. CCAGCATCGTAAGCTGACTCTGAATTTAAATAAGAATCT 1628459 33 100.0 47 ................................. CTGAATACGCTAACTTTCTCAACTGAACCATCAGTGTTCTGTTATCT 1628379 33 100.0 46 ................................. TGTATGCCCACCATTCACTTCCATCGTACTCAGACCTTTCGAATCT 1628300 33 100.0 40 ................................. CAAATTGGATCATCTCATCCACCTCCCTGATTTCATATCT 1628227 33 100.0 39 ................................. TTCTTCCCTTGGGAAAGAAATTTTTGTAAAAGTTAATCT 1628155 33 100.0 42 ................................. CTCTACAGAAAAAGTTTTATCTTTGCGGATGTAACCGCATTA 1628080 33 97.0 45 ........C........................ TCTGTTATGAAATTCATTTTGTTCTCCTAAAAAAAATTAAAATTA 1628002 33 97.0 44 ........C........................ GGTGTATTTTTTGCCTAGTAGATTTACATTGTTCATTTGTATTA 1627925 33 97.0 44 ........C........................ TATGTATGCGCTATGGTTGCCATAACTGTCTATAAGAGCTATTA 1627848 33 97.0 37 ........C........................ CTTCTTTCCCGCTAACCTGGGTGTCGTCATCACATTA 1627778 33 100.0 40 ................................. GGTAGGTCCACAGCCACATGCTTTGGAACTTTAAAAATCT 1627705 33 100.0 48 ................................. ACTATAGGTACTTAGTTTAGCTGCGTATACACTTACAAATGCGTATTA 1627624 33 97.0 47 ........C........................ TTCTCTTTAAAACCGCACTCGGTGCCATACTGAGTATCTTCTAATTA 1627544 33 97.0 44 ........C........................ ACCAGCATCTTTATACATTTCAAATACATATTTAGATACAATTA 1627467 33 97.0 47 ........C........................ TTTCTCCATTTCTTCAGCTGTTAAGCCACCAAGAGTTGTGTTGATTA 1627387 33 97.0 46 ........C........................ TTTTGAGCCTCTAAATAGCTTGGATAAAATGCCCAGTATTTAATCT 1627308 33 100.0 40 ................................. TAAGAAACACTGATGTCAAGAGCATTAGACATATCCATCT 1627235 32 97.0 43 .....-........................... CGTGGATATGCTCTTGTTTTCCTATGAAAAAAATTTTATATCT 1627160 33 100.0 43 ................................. ACTAGTTTTGCCATTTAAGTGGCGCACACTAGCTCCTTTATCT 1627084 33 100.0 39 ................................. ATTTTCTTGGTTGATCGCTTTCGCATGAATTTTTCATCT 1627012 33 100.0 44 ................................. AACATCCCAGTCGTCAAAAGCATAATCGAAAAAGCTGAAAATCT 1626935 33 100.0 47 ................................. CTCAGACTGACTCTTCTATCTTAACTTATGCGTTAGCTTCTGTATTA 1626855 33 100.0 41 ................................. AGAAACACGGGATGTCTCCCACCTCATGGTTAACAGAATCT 1626781 33 100.0 46 ................................. TCCATTGGCATCGCGAATTTTCTTTTTACTTTCCAAGAAAAAATCT 1626702 33 100.0 44 ................................. TTACCAGCTGCTGCTAGTCTAGGATTCTTTTTAAGTGTAGATCT 1626625 33 100.0 40 ................................. TAAGAAACACTGATGTCAAGAGCATTAGACATATCCATCT 1626552 32 97.0 44 .....-........................... GACATATTGAGGAATGAACTGATAGATATCTTTACGTTGTATCT 1626476 33 100.0 45 ................................. AATTTGGTTACCAGCTGGAGCTAATTTTTGAGATGTTTTTTATCT 1626398 33 97.0 48 ............................A.... TTGGTAGAAATCTCAGAGCCATTAATCCAGCTAATTAATTTGTCATTA 1626317 33 97.0 47 ....T............................ AACGTCCTCTATTTCAGAGGCTACAGTTTCATAAGCCTCTGAGATCT 1626237 33 97.0 42 ........................A........ GTTGGCATCTGAAAGTTCGGCAGGGAACAATTTTTTCTATCT 1626162 33 97.0 48 ...............T................. ACAATAGGGCTCTCGCGTTTGTTTTCGCAATATACGGAATAGTCATCC 1626081 33 97.0 44 ..........C...................... TTGTCCAAGTACGCTTTGGATAGCCCAATCCCAATCCTCTATCT 1626004 33 97.0 47 ..................A.............. ACATTATCTTGATACCATTCCCATTTCTTATCATTAAACTTGGATCT 1625924 33 100.0 44 ................................. CATAAATTCTTTATCCTCTTTTGTCTTGCCGACTAATTTTATTA 1625847 33 97.0 40 ................................T AAAAAATCAACTAAATTCTCTAGTGGAAAGAAAATCATTA 1625774 33 97.0 41 ..........C...................... GAAGCACTACCTAAAGCAATTGTTTCAACTTTTGCAAATTA 1625700 33 100.0 44 ................................. AACATCCCAGTCGTCAAAAGCATAATCGAAAAAGCTGAAAATCT 1625623 32 93.9 0 ............T.-.................. | ========== ====== ====== ====== ================================= ================================================ ================== 40 33 98.5 44 GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : CTGCATGGCTAAAAGCGAGACCTTAGGCGAGGGCAAGATATTTTGCCCAAGCGACACCTATGTCTAAGCGCCTTTTTTAGGGATTTGATTTTCGAACTTTTCTAAATTTCAAAACGCCCTTTTTACCGCATTTTTATATTTTATTAAGTTTCAAAATCTTCGAAAATCTCAAATTTCCCTATCCCAAAAAAGACTTTCTCGAACTTTTATATTTTTGCACTTTTAAAGTTGCCTTTTTTAGGCACTTAGCATATAGCCCAAATTTGCCAAAATTCGAAAATCACACAAATTTTCACTTTTCATTTTAGATTTTCGAACTTTTTAGCTTTTATAAATGCCCTTATATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCAAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCCGGCAAAGAGTAGTTCTTTTAAAACTCATTGTTAATTTACAAGCGTTTTTTGGGCTATCT # Right flank : AGGCAGGTCCATCTAGCATAGTTCTTAATCATTAATTCATAGATATATTTCATTTTAGTTATTTTTTTAGTTGATATATAAAAAAATAATCGTCATATTGACCATATATGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGATACTTACTACAAAGGTACTGATATATGGGGCGCTTCGTCTTTTGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGTCATGCTGGTGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAGAAGCTATCTGAAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //