Array 1 235451-235847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000001.1 Nocardia sp. ncl2 NODE_1_length_235852_cov_11.8593, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 235451 28 93.1 44 T....................-....... GAGGCAGGCCGGTGACACCTGTTCGGTCCCGCACCGTTCTGGCA A [235455] 235524 28 96.6 44 .....................-....... AAGGCAGCACAGCCCGAACACGTTGCGCCGCAAACCACCTGCTC 235596 29 96.6 45 ...............A............. GAGGCAGACGGTTTGGGCGGTAGCGACCCAGTTCCCGGCGGCGTC 235670 29 100.0 45 ............................. GAGGCAGTCGAAATACTCGATGACCGGCGCCATGGTTTCGATGTA 235744 29 100.0 46 ............................. GAGACAGAGGCCGACACGGTCCGGCGCGCAGTGAACGAGACACCCC 235819 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================== ================== 6 29 97.7 45 GCCGCAATGGAGTCCGGCCGGAACGGCCG # Left flank : CCGGATCGACATTCAGATTCTCCGCCACCGCTACACCACCCCCACGGTCGCGGTGCCCTTCTGGTCCTCCTGGATTGCTGGCGGGAAGGCCATCGGTGTCGTACCGACCGCGTCCACCATCACCCCGGTCGGCTTCGCTCGCCCGGCCGCGTACTCGGCCAACCGGTCACCCCGCAGCGTGTGATACCTGTACTCCCGCGGCGGGGTCACCGCACCACGACGCTGCCAGTACGCGGCCAGCTCTTCCACACTGGTGAACGCGCATATCCAGTGCACTCCGCCGACCTCGCTGGTGAATATACGATCGTCGCCGGTCAACGGCACGAACAACACCGCATCCCGGAACGCGGACACCAGCAACTCGGACTGCCCGAAACCGGCGTAAAACGCCGCGACCTCCGACCGGAACCGCGCCACCCCATCCTCGTCGCCCAATCCCAGCCCCCTGCCCGGTCGACATCCATCACCAGATCGAACCCGAACCGAGCATACCCACCAAC # Right flank : GAGGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGTCCGGCCGGAACGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-1.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 9-195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000279.1 Nocardia sp. ncl2 NODE_279_length_3372_cov_8.01048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 9 38 100.0 36 ...................................... CTGCGTTGATGCCGTCGACGATGATCACCGAGGGCT 83 38 100.0 37 ...................................... AATTCGGTCTCGGGAAGTTCCGGGGCCACGTCGGCCA 158 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 100.0 37 GGCCGCAATGGAGTCCGGCCGGAACGGCCGGAGGCAGG # Left flank : GTCGTACGG # Right flank : GGCTCTGTGAATTTGGTGGGTGTGACTTGCGGGAATGCTTGACTTTGCGAGCGGTCCGGAGGATGGGTTCGACACGCCGAGTGCGGTAATGTGCGACCCCGTGTGGGATAACCCTTCTGACCTGGGCGCGAGCGGTGAAGGCGTGTCGGGGTACCGCTGGACCGCTCGCAGATGATCACTGTGCTGTTGTCGATGTGCATGCCGCTCGTGCACGGAATGTACCGAGTCTGGGGTGTCAGTGGATCGGTTGTGTGTGGCAATTGTCATGGTTGTGGTTGGGTGTCAGACGATTTGAGGACCGGTGGGCGGTAGCCAGCGGCGGTGTCCGGTGGTCACGATCTGTGCCTGACGTCCAATGCGGGTGTCGTCATTGTTGGCGAACCGTACCTGGACCCACTTCAGGTAAAGCAAGCTAGGGCAGTAGACGCACTCGTTCACCATCCGGGCAGGGATCAGATCCTCGGCGTCCATCATGTAATCGTGACGCGCTGGGCGGTGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCGCAATGGAGTCCGGCCGGAACGGCCGGAGGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 64-430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000339.1 Nocardia sp. ncl2 NODE_339_length_468_cov_0.800587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 64 32 100.0 36 ................................ ACGTAGTCGCCCGCGGCGAGCGCTTCGCTGGCGGTG 132 32 100.0 34 ................................ TACTCGGCCGAGGAGCAGCGGGAGGCCGCACGTC 198 32 100.0 35 ................................ ATCCGCCTGTGCATTTTGATCACCGCGCTCTGGCT 265 32 100.0 34 ................................ CAGTGTGACTGTAGAGCTTGGACCAGGTTCTCGT 331 32 100.0 36 ................................ AAGGGCGTTCCCTGGACGAAGGAATCGGCTCTGTTC 399 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CCCCGCGTGGGCGCGTGGGTTGAAACCGCCGCATCGTGCGCTGGCGCGGGCAGTACGTGGCACG # Right flank : ATCCAGCAGGCCCGGGACCGCGCCACCGTGCTCTACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 96727-95969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000012.1 Nocardia sp. ncl2 NODE_12_length_101039_cov_12.417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 96726 35 100.0 37 ................................... GTCCCACCCGTACCCGGATCTCGCGCGTGCGGGGGAG 96654 35 97.1 36 ................G.................. GCTCAACGGTGCCGCGCGCTGGGTGCCGATGGACGC 96583 35 100.0 37 ................................... GCGGGAGATCCGCGCGTGGCGCGGGCAGTCGCTCGAG 96511 35 100.0 40 ................................... CGTGCAGGATGCGCGCGGGCGTCTCATGCTGTCCCCGCTC 96436 35 100.0 38 ................................... CAGGACGTCTACGATTGGGCTGGGCAGTTCCGCACGGT 96363 35 97.1 39 .................................A. CCTGGTGGTCAGCACCGGCCCCCACGGGGCCAGCACCGC 96289 35 94.3 37 ............A............G......... CCACGAGACCGCATTCTGTTTCGCGTCGGCCTACTGG 96217 35 88.6 31 ....T......T........T............T. CCAGATTTGCGTGGCGATCGACAGTATCCAT 96151 35 88.6 37 C..........T.C.............A....... CATCGAAGGACAATTGCACGATGTCGTGGACACTCAC 96079 34 85.7 40 .....A.-...T.....A..T.............. CACGGGCCAGGGCCCGCCAGGTGCCGGGCGCGGTTAGGAC 96005 35 97.1 0 .......T........................... | T,C [95978,95993] ========== ====== ====== ====== =================================== ======================================== ================== 11 35 95.3 37 GTGCCTCCGGCCGGAACGGCCGGACTCCATTGCGG # Left flank : TGGAGGATCACGGGCGCAGGCTGCAGTACTCAGTGTTCGTTTGCGACCTCTCGCACGCCGAACTCGCCGAATTGGAAACCGCCGTGCACCACATCATCGACTTCAACGCCGACAGCATCATCCGCATCGATCTCGGCGACGCCGCCCACCCGGCACCGATCGTGACCACCGGACACCGTCGCTGGCGACCGCCGTCTGGCCCTCAAATCGTCTGACATCCCCACCCACAACTATGAACACGTCTGCGCATCCGCCCGATCCGCCCGCGTCTGGGATTCGGTACATTCGGTACACGAACAGCATGGTCCTGGATAACAACACAACGAATCACGGCGAGCGGTCAAGTGGTGGCACGACACGCCTTCACCGCTCGCACCCAGGTCAGAAGGGTTATCCCGCGCGTGCCGGGCACTGCCTCACTCGGCGTGTCGCACACACTATCCGGACTGCTCGCAAAGCCGGGCATTCCTGCAGGTCACACCCGCCACATTCACGGAGCT # Right flank : CTAGGCATCTAAACGGCTGTCAACACAAGAATGCCTCGGCCTGGTTCCCGGGGATTCGGGCCTGATGGTGCTTGGCTTGGGGATGGACGGCAAGCCCGGTGTCAGGTTTCGGGAGTGAACAGTCCGAGGCCGAAGTGGTTGAGTCGGCCGAGCGCGATGGGACCGGTGATCGGTTGTTCGAAGTGTAGGCGGAGGAATTCGGCGGGTTGGCGGGCTTGGCCTTGCTTTGTATCGCCTCTTCGGCGGGCGCTGGGGCGGTGGCGGACGAAGGTAGTCCAGGGGCGGTCGAGGAATTCGATGCTGGTTGGTGGTGGAATGTGTGGTGCGAGTTCGCGTTCGATCTCGCGGATGATGAAGCTGTGCCGGTGGTCGCGGTTCTTTTTCGGGTACCGGGAGGGGGTGAAGGGGGTGACGCTGCGCCAGGTTGCGGCCAGTTTGGCGAGTTCGGGGGCGATATGGCCGATTTCGCCGATTCCGGCCACCCGGACGGGGGTGTGACG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCTCCGGCCGGAACGGCCGGACTCCATTGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 17637-18258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000036.1 Nocardia sp. ncl2 NODE_36_length_69349_cov_10.1089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17637 37 100.0 36 ..................................... GAGTCGATCGCTGCTCAGATCGAATTCGATCCCGCG 17710 37 100.0 37 ..................................... CCGACAAGAACGCCGTGGCTGCGCACAGCCGTCCTCA 17784 37 100.0 36 ..................................... TGGTTCGCGATCGCGTATATGCGCACGACAGGGACC 17857 37 100.0 35 ..................................... TTTTTGAGCCGGACGGCAATCGAGTTCGGTCCGAA 17929 37 100.0 38 ..................................... ACCGTTCGATCCTTTGCTGTAGGCGTTGCAACACGGCG 18004 37 100.0 34 ..................................... GCCAGCCCGACCCGGATGCGCTCCATCGTCGCGG 18075 37 97.3 37 ..............T...................... GTGATCCGTGCGGGCCGACGCATCTGCGGGGTCCTGA 18149 37 97.3 35 ...........T......................... GCCAGCACCACGTCGTATCGGCCGCGGGTCAGCAG 18221 37 91.9 0 ..............T.............A...G.... | A [18249] ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 98.5 36 GCAGCGCCGGACGTCCGCGTCCGGCGAGGATCTCAAC # Left flank : CGACGAGCCCAGCACCGAATCGGCCCAGGGAGATCACGTCTCGAAGAGTGCGAATAGCCAACGGACAGAGCCGGAATGGGTCAGGAGTGGCTCCGCCCCCGTGTCGCAGGCGGTTGGAGTTGAGGTAAAGCGCGCGGATACGCGACCACCGGCGGCCTCGGCAGAGCCCAAGCCTGAACAGCGGCGTCGGATGCCCGTCCGGCAGCTGACACGGCCAACTCGCTTACGCTGATGGGAGGTTCTCCTTCTGGTTTGGGCTCTACGGTCATCGGCCGCGGCTTACTTGCCGGATTCGAAGATTTATCGTGGGGTGGGCGGATGAGAACAAGGTGGACGTTGTCATCTAACCGATATGGGGACGTTGGGGTAGGTTTGGAACCCCTAGTGCGACTGAATCTCCAGGAGGGTTCCGAACCAGCGATCAGGCAGATTGCGGTGCTAGGCAGTCGATATCTGACTCTGGCAGCTGGCGGAGAGGCAGAAGTCCCAGTTCAGGCAGG # Right flank : CTGGGATATCTCGGGGGGCGCGCACGTGGTGCTGGGGGTATTTGCCGGGCCCACAGGTTCCAGGTTTATCGGAATTCAGTGATACAACCGTGCTCACTGGTTCCCGCAAGTGACGGGCTATTCCCGATATCTGTCCGGCCAGCTTGGTGACTGCTTGTTTCGCTGGGATCACAGGGGCGGATCCACAGGACCGACTCACCGGTATGCAGGGCGGCCGGGGCCGACTCACCGCCCCGGGCATTCCCGCTGGCAGTGCTACCGGGCTGAACAGGGGGAATCGTGGGCTGGCTGTGATGCCTACGTCCAACCGCTTTGCAGGTTTCGTTTCTCGAAGTAGTGGTCGTCAGCGGCCTGGATCTCGGCTTCGGACAGGGGATGTCGTGCTTGCTCGGGAGCTGCCGATCGGGTGCGTGCGTGAGTCAGTTGATCCTGGATGCGCGGGCTGGCCTGGCTGGCGAGGCGTGCGAGCTTGGATTTGGCGTCGGCGCGGGCTTTGCGGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACGTCCGCGTCCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 47922-48623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000036.1 Nocardia sp. ncl2 NODE_36_length_69349_cov_10.1089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 47922 37 100.0 38 ..................................... TTGATCCCCTCCAGCGCCTGCGACCCCGACGGGTCGCG 47997 37 100.0 35 ..................................... CCCATGACCACACTCGGATGCGCATCGCCGACCTC 48069 37 100.0 37 ..................................... CTCGAGCAAGCGGAGCAGGCGCTGGCTGTCGCACCCG 48143 37 94.6 36 ........AA........................... ATATTGTTGAGAGAGCCTCTAAAGGTGGCACCCGAC 48216 37 100.0 35 ..................................... GGCATCGAGATGCCCCGCCAGCCTCTACGCCTGAT 48288 37 100.0 40 ..................................... GGGAACCCCTCAGACACGCTGTATGACAACACCACTGGCG 48365 37 100.0 36 ..................................... AACCAGAACGGCACCTGGACGCAGCCGAGCGGGCTC 48438 37 100.0 38 ..................................... AGGGCGACGCCGCCGACCGGATACTCCGGCGCCGAGGA 48513 37 100.0 37 ..................................... AAGGGCTCGGCCCGGCAATGCAAGACCTGCCCGCTAG 48587 37 94.6 0 .............................G......T | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 98.9 37 GCAGCGCCGGACGTTCGCGTCCGGCGAGAATCTCAAC # Left flank : GATGCAACGATCCGTGAGCCCATGATGTGCTGCGCGCGCGGCGGTTCCGTCCCGAACACCCGGTCGTAGTCGCCGGCGCGATCCTGCGAACGAAGGGGTGCACCGCGTGCACGAACTCGACGCGGTCTTCAACTTCCCCCCGATCCCAGAGTGCATCGGACCCGCATCCAGACCATCCGCACCGTCCTCGGCAGCACCACCGCACCCGGACCGCGCCAGCCGGCGGCCATGACGTATGCGTGTCGGCGAGCGGACACAATGAGGACAATGAAAGCGACAGTTACTGATTGAACGCAGGCGCGGCACGAGACGATGCCTGACCGTGTATCTGGTAAGTGTGATCACTGGGAAGGGGAGTTGGCTGGGCTTGGTTCGGAACCCCTAGTGCGACCGAATCTCCAGGAGGGTTCCGAACCGGCGACCAGGAGGGGAAGGGGGCCGGTCAGCCGACATCGGGCTGTGGTGACTGGTGCACAGGGCGAAACCCCGGTTCAGCCAGG # Right flank : TGGGGACTTCACCTCCGCATTGGAGCAGGTGACGTGTGAGCAATGCGCCTGGAGATAATCCGCGCCCCTCGCGGACGACACTGAGATGTCGGTGGTGGGGTTTACGTTGTGCGGATGGTTCTTTGGGCACACAGCGCGCGGTGGCAGCGCGGCTCGGATGAGGCGCTCGTATTGGGTCCTCGGCATGCGCTGGCTGATCATTGTCGGTCGACGGCAGTGTTGGCGAGGAGGTTCGCCGCAGTGTTCGGTGCGGGCGAATTGGCATACGTACTAGGGCTTTTTCATGATGCGGGGAAGGCGTCCTGTGTGTGGCAGGATCGGTTGTTGGAGGTGGAGGGTACCGATAACCCGGTAGGAGTGCCGCACAAGGAGTTGGGGGCGCGGCTGACAACGAAGGCCGTCGGTTTTGCCGCGTTGGCGATCCTAGGGCACCACGGCGGCCTGAAAAATCGTGGAGCGCTCGACGATCTCGACCTGGATGGGGACTGGTCAGCTGCGGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACGTTCGCGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 57995-58673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000036.1 Nocardia sp. ncl2 NODE_36_length_69349_cov_10.1089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================ ================== 57995 37 100.0 35 ..................................... GGTTTCGTCAAGGACGATGCCGATCTCTCGCCAGA 58067 37 100.0 37 ..................................... ACCTACGGCAACGGGACGACGACACCAACGATCTCGG 58141 37 100.0 40 ..................................... AGCATTCCCTGGTAGGCGATGGCTCCGCTCTGCTGCGAGT 58218 37 100.0 36 ..................................... CTGCCGTACGGCGCGAACCTCCACGACCTCAACTAC 58291 37 100.0 80 ..................................... TCGCCGGGCGGCACGACCAGTAACACGGTCAGCCGGGAGTCTCAACAGCTGCGCGTCCTCGAGAGTGAGACCGCCCTGAC 58408 37 100.0 35 ..................................... ATCGGTGGCGGGGAAACCTTGGCTGGCCTCCTGAC 58480 37 97.3 37 ..................A.................. GGCCGCCCGCGCCTTCTGCGCGAGGCAGAACGCGGCC 58554 37 100.0 39 ..................................... AACGTCCGGCCGTCATCCTGAAGCGACGCGCGTTCGCCG 58630 37 86.5 0 ...................C........T.G..T..T | TTAAT,T,G [58654,58663,58671] ========== ====== ====== ====== ===================================== ================================================================================ ================== 9 37 98.2 42 GCAGCGCCGGACGTTCGCGTCCGGCGGGAGTCTCAAC # Left flank : ACTGACCCAGGCCCGACTACTCGCCCGACACTTGCGCGGCGACACCGACACTTGCACCCCGTGGACGGTGTCGTAATGGAATTACTCATCACCTACGACGTCGAGACCACCACGCCCGAGGGAGCCCGCCGCCTGCGCCGAGTCGCCAAGATCTGCGAAGGCTACGGCCACCGCGTCCAACAATCCGTCTTCGAAATCACCTGCAACCCCACCGACCGACTCAAAATCGAAGCAGCCCTAGCCAAAACCATCGCCCCCGCCCTCGACAGCATACGCATCTACCAGCTGGACAAAGGCACCTTCGACACCGCCCGCCACCTCGGCGCCGCCATCACCCCACCGCACAACACACCACTCGTCCTATAACCCGGTTCGGAACCCCAAGTGCGACAAAAGTGCCAGGAAGGTTCCGAACCGGTGATCAGGACAAACGCTGTCTGTCTCAGCACGATCGGAGTCACAGAACATACTGAAAGACAAGAAACTGCAGGTCATCCAGG # Right flank : TGGAGCGTCGGCGTCGAGATTGCCGCTGTTGTATTCGTCGATGGCGGGCTCGGTTAACTGATGCTGGTTGCGGGGTGTCTGATGTCGGCGGCCGGGCAGGCGTGTGGTGTGGTGTGGTCGGCGTGCTGGCGCGGGGATCGGGACAGGAGTCGGCCACCGACAGGATTTGTTGGTCGGTGGTTGCCTGGATGCGGTGTCTGAGCTGTTCGGCGTATGCGGCGAGTGCCGTGTCCTGGCCCGGGTGAGCTGGGGGTACGGGACGGGATCGGCCGCCGAATGGGACGTCTCGCGACGCGCGGAACGGTCCAGGCGATGTCGCCGAGGTGGCTGACGAGCTGAGAGCGGCAGCGAGGGTGAACGCATCAGCGGGTTGCAAGTCGGTCAGTGTTTCGGTGGATACCGGCACTGTCGAAGGTACTGGGGGTGGCAGGTGATTCTGGATCCATCGGTCGGCGCGGGCGCGTAGTACGGCGGCGGTGTCGTGGGCGTTGACGAGTGAT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGACGTTCGCGTCCGGCGGGAGTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.30,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 36347-35037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000089.1 Nocardia sp. ncl2 NODE_89_length_40641_cov_18.7811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 36346 29 76.7 115 CCG............T........A-..T. GGACATCCCGGATTGCAGCGACACGCCGCGGTTCGGTGCACAACCGGAGGTACGCTGCAAAATCGGAGCGCAACACTGCCTGAAAACTATTCTCTGCCTGCTGTTTTACCTTCGG T [36342] 36201 30 100.0 36 .............................. GTTATCGCGGATTCGGTGAGTTGGTCGTCCGGCCCG 36135 30 100.0 32 .............................. CGGGGTTCGTGGGCGAGCCCTGCTGCGTCGTC 36073 30 100.0 37 .............................. ATCTGCTCGGCCAATCCCATCATCGCGGGCGCCAGGA 36006 30 100.0 37 .............................. ATGAACTACGGGCGCATTCACCGGGGCGAGATGTCCG 35939 30 100.0 37 .............................. ACTTGTCCGCCGAGTACCTGGACCTGTCGCTGCGCAC 35872 30 100.0 40 .............................. GGGGAGAACTCCGAGGGCGCGACGCGCAGGGCGCGGGCCA 35802 30 96.7 37 .........................T.... TACAGGTAGGCCACCTGCGGGCGCCCATACCGGTAGA 35735 30 100.0 29 .............................. GCAGGTAATCGGCAGGTAATCGGCAGCCC Deletion [35677] 35676 30 93.3 37 ...G...G...................... GTCTTCATCACGCACACGCGGGTGCCGTTGGCCGGCG CCTGG [35665] 35604 30 100.0 36 .............................. AGATAATGCGTCGTGTGCTGACCACCGATCGGGTAC 35538 30 100.0 36 .............................. CTCATCAGTGCGTTCCGCACCCGGGCGAGGTTGACC 35472 30 100.0 39 .............................. CTACTAGGCACGATAGGCAAGCGCAGGAATCCACTCGGG 35403 30 100.0 34 .............................. GCGGTCATCGCGGCAGCGGGAGTAGAGCCTCCGC 35339 30 100.0 39 .............................. ACAGGCACATGCGTGACGGCCATGATCCGGGAGGCTTGT 35270 30 100.0 38 .............................. AGCATGCGGCGCAGCTGATCGGCCTGCGCGAGAACTGG 35202 30 90.0 39 .....T.CT..................... GTGCCCGGTCCCAGGATCGACAAGCACAACCGTCCGATG 35133 30 93.3 37 ........T...G................. GTCAGACCGACCGAACGGGCGTATCGGACGGCGCCGG 35066 30 90.0 0 ................T...........CT | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 19 30 96.8 41 GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Left flank : CCCGGGCCTCGACGGCCCGCCGGAAACACCGGCGCCGAATAACCGAACGGTACAAGTCGATGCCGACCGAAACCGTTGTCGTGCAAGCTCACACCTAACTCCGGGTCTGTCCGATGGAACAGTGAATAGCACACCGCACGCCCCGGACTGAGCACGTGATCCCACGGCAACGTCCGCGCCGAGGTATGGCCCGTTACACGAATACGCATAGTTCGTACCTGATTTCGGAATCCCCACGGACGGCCACCGGGCCGTCGCGAACCGTTTCTGTCGGTGCCAGCTGTCACAGTGTGCAAGCGGCCAGCCCGCAGCAAGGCTAGCTGAAGCTTCAAGCCGGTGCAATACCATTGCCAGACCCGAAAATTGGGATCCGGACAACCCCGACAAGGACCCTCGAGGCAGCGAAAGCTATTGTGAGAACGTTCGATACATCGCCCCGCCCGCCAAGCAGCGAACACGGGCTCGCAACGGCCTCGCAATCGTCTTCACTCGCTTGCGAA # Right flank : ACAGCAAGTCCCGGCAGGTCGACCTGGGGCGGGTGGCGCCCGGTATCCGCCCTACGAGGGTGTAAACGGCGCGCCAAACGTATTCACGTGCTGTCGAGTGCGCCAGGCGGGCGCTGTTAATTCGAATGGAGGTGAGAGACCTTCGACGCTCAATCGCGCAGGTACCGCGCACCATCGGTGCTGATCGACATCATCAACAGTACGCGCGTTCCAAAACCAGGCGCACCATGCAGGTCGGCCACAAAAGGCGTGACCGACCCACGAGCAGAACGCGTTACGTGTTGCGGTCCCATCACCTTTCCGTTTCTGGGCGCACCGGACATGCAAGACCCCCCGGTTCAGGGGGATGTAATTCATTAGGGAATGGATTGCGGGCGTCGGGCGTTCATCGCTCTCGATGCTGGCCCCGTTCCCGGGACAGTCCCTCGCGCTTTCTGGCCTGTTTCATTCGGAGGGCGTCATCGGGATCAGGCCCTGTGCTTTGTCCCGGGCCACCTCAC # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCATCCGCCCTACGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [8-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 22795-21833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPOX010000139.1 Nocardia sp. ncl2 NODE_139_length_25460_cov_22.4641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 22794 30 96.7 35 ......................T....... TCCTCGTCGCCTTCGATATCGCCGATCAGGCCACG 22729 30 100.0 38 .............................. TAGCGGTACAGCGCGTCGTGCGGCGGCTCGTTCTGCGG 22661 30 100.0 37 .............................. ATCACCATGTCCTCGGACCTGATCAACACTGGCTGCG 22594 30 96.7 38 ........G..................... TAACCGCAGCTGGTTTGTCCGTAGGTGTCGGCGTGAGC 22526 30 100.0 35 .............................. AAGTCGTACAGCCGCACCGGCGCGCACAACTCCGT 22461 30 100.0 36 .............................. GTCGTCTGGCGCTCGTACAGGTGCACCAGGCGCCCG 22395 30 100.0 39 .............................. AGGGCTTCACGTTCGTCGGTCGCCAAAAGACCCTCCATT 22326 30 100.0 37 .............................. CCGACGAGCGCCGTGGTGGGGGTGAGCATCCGCAGCC 22259 30 100.0 36 .............................. GCCATCTGCAGGATGTCCGCGCCGCCGACTGCGATG 22193 30 100.0 35 .............................. ATATACAGGGCTGCTGAGCTGCCGCCTTCCAAGTC 22128 30 96.7 39 ......................A....... CGGCACATGGCGATGCCGGTGTGCGCTTCGCCGTCGCGG 22059 30 100.0 34 .............................. TCGATGCGATACACCTGCTCGAAATACATGTGCC 21995 30 96.7 35 .......A...................... AGCATCTTGGCGTACTCGTCCAGGATGTAGGGCAG 21930 30 96.7 38 .........................A.... GCGTCGAGTTCGGCCAGAACAGCGTCCAGCGTTTTCCG 21862 30 96.7 0 ........T..................... | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 98.7 37 GTTCGCATCCGCCCTACGAGGGCTCGCAAC # Left flank : CCAAGCACCCGACCACGCCACCGGGCGCCTGCGCGCCGACGACCTCCTGATCCCCCTGCCCCACTGGGCCCGCCACGCAACCGCATACAGTCCCGACCTCGGAATCCACATCATCCCCAACAACCCCGAAGACTACGACCCGTACAAGGGCCTGCTGAGCATCCGAGGCCGCACCGACAAGGACTACCGTCCCGGGGAAATTATATGATCACCAGCCCCGACATCGGCGGGGTACACATCAAATACCTCTACCACTGTCCCCGCCAACTCTGGCTCTACATCCGCGGCCTACGCCCCGAATTCCTCAACCACCATGTCCAATTCGGCGAGGCCGTCCACGACACCTCTTGCTCCCGCGCGCACCCGGTCGACCTCGGCGCGGCCCGCCTGGACGACCTCGACGGCACACTGTGGGTCCACGAGATCAAATCCTCGGCGCACCCCACGGACGCCGATCGCGCACAAGCACTGCATTGCTGCTACCGGTTACACGAGATCGT # Right flank : ATTCCCGCATCGATCGCGCCCTGGTGGAGCGTTCCCGGTTCGGTGGGAACAGGGCTGAAAGCCGCTCGGTTGGCCGTCTAGTGGCTTGTCGTGCAACATTGGCCGGGTATTCGGTACAGGTACGGATGGGTCATTCGGGGGCAAAATTGGTCTTCGGCTTGATCCGGGTGTTGTGCCAGCGGATGTAGGCACCGATGGCGGCGTTCTGCTCGTCGTAGCTGCGGTGGTCGGTGCCGTTGAGTGCGAAATGCGGTGTGGTCGCGCAGCGGTGGCACCGATATGCGACCACGGCGCTGTGAACGCGGCCGGGGTCGCTGATCCGTGCGCGGGGCCGCGCACGGATCATTTCGCTGGGGGTGCACCGCGTCGGCGCGGCGCACCCCCGGCGCGTGCAATCGCCATGCCCACGCCCGGGGTGTGGAAGGTGCGGCAAGAGCGCGGCTTTCGTAGCTATGCGTTTCTCGAGCAGGCCGAATCAGGGTACAGGAATGTGCGAACGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCATCCGCCCTACGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.60,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //