Array 1 63084-62156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSH010000035.1 Pseudomonas aeruginosa strain CCBH28242 35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63083 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63023 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 62963 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 62903 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 62843 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62783 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62723 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62663 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62603 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62543 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62483 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62423 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62363 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62303 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62243 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62183 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9767-8362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSH010000050.1 Pseudomonas aeruginosa strain CCBH28242 50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9766 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9706 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9646 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9586 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9526 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9466 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9406 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9346 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9286 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9225 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9165 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9105 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9045 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 8985 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8925 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8865 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8809 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8749 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8689 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8629 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8569 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8509 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8449 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8389 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1675-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECSH010000164.1 Pseudomonas aeruginosa strain CCBH28242 164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1674 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1614 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1554 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1494 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1434 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1374 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1314 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1254 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1194 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1134 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1074 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1014 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 954 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 894 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 834 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 774 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 714 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 654 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 593 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 533 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 473 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 413 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 353 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 293 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 233 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 173 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 113 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 53 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ACTCGAACCCACCTCGGCCACAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //