Array 1 41535-42030 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEW01000011.1 Staphylococcus warneri strain SNUC 2963 contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 41535 33 100.0 33 ................................. AACAAGAAAGCGATACTGGTGGTGCTTATTGTG 41601 33 100.0 35 ................................. AACTTATTATTTCCCCGATTATTGCTATTGCAAGT 41669 33 100.0 33 ................................. AACATAAATCTACAGATTCATTAGGCAAGCTTT 41735 33 100.0 33 ................................. AACGAATGGCATAAAAACAGCATCTTTAATTGT 41801 33 100.0 32 ................................. AACAATGCCTATTTTTGAAGGTGTTAAACGAG 41866 33 97.0 33 ...............A................. AACTCTTTGTTCATTCTCTCGGTCTGGGTCTGA 41932 33 97.0 33 ...............A................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 41998 32 75.8 0 ...........T...A....G.-A.....AA.T | T [42024] ========== ====== ====== ====== ================================= =================================== ================== 8 33 96.2 33 GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Left flank : AAGGATTATATACAGACTTCGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAGGTCAAGGCTATGTACATCATGTCGCAGTCAATCTCCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCGCGACAACCCAACCCTAACTCCGGTATCATCGATCGATACTTCTTCAAATCGTTATACTATCGACATAACCAAATCCTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGCTAAACTAGGTCAACAACTCAACCTCCCCGATTTCCTAGAGGGCAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAAAATACAATATAAAAGCACTCGCTAGTACGGCGAGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTATTAAAATTTTTAGTAGTAAAGTTTTATATGCTAGAG # Right flank : TATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTGGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACGTAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATTCATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTGATTTTAGGTATGAGTGA # Alternate repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 47708-48403 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZEW01000011.1 Staphylococcus warneri strain SNUC 2963 contig011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 47708 33 100.0 33 ................................. AACTTATTCCAATTGCTTTATTGACGTTGAGCC 47774 33 100.0 33 ................................. AACAAAAAACCATTGATAACGAAAATGCGCGAA 47840 33 100.0 33 ................................. AACTTACATTTGAACAGTCTGAATTTGTACCAC 47906 33 100.0 33 ................................. AACATTCGAAAGGTTTTGTCGCAAGTGTTCCGT 47972 33 100.0 34 ................................. AACTTATAATTTTTAAACCACAAGCCTTAAGCCT 48039 33 100.0 33 ................................. AACCAATTGTACATACACCAACTGCTCCGACTG 48105 33 100.0 33 ................................. AACTACGTATCCTTAAAAATGGTGACTATAGTA 48171 33 100.0 33 ................................. AACGGTTTCGCAAACGATGATTCGTTAGGTTAT 48237 33 100.0 33 ................................. AACATACAAGAAGGAAAAGCACTTAGGTTTCAT 48303 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 48369 33 100.0 0 ................................. | A,A [48397,48401] ========== ====== ====== ====== ================================= ================================== ================== 11 33 100.0 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATTGTAAACTTTTTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //