Array 1 8811-9711 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JABAGI010000025.1 Bifidobacterium thermophilum strain BSM-130-P53-3C Contig_25, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	=================================	===================================	==================
      8811	    33	 100.0	    33	.................................	TGCGGCATGTATGAGGGGGAACAGGACACGCTC  	
      8877	    33	 100.0	    34	.................................	ACTTATCGTGACGGATTGACGACATTACAGTTAA 	
      8944	    33	 100.0	    33	.................................	CACATAGCGCGCGTCGGCGTCGCCACGTGTCAG  	
      9010	    33	 100.0	    34	.................................	TGCCGGACACCCTCACTACCAGCAAGCCGACTTT 	
      9077	    33	 100.0	    33	.................................	ACATATTGGAAAGTTCATGAGTTGTATGTACGT  	
      9143	    33	 100.0	    34	.................................	CAATTTCTATCGCGAATAACATCATCAAGAAGGT 	
      9210	    33	 100.0	    34	.................................	GTGTTGTTCGCCGTGTACTGTGCGCTCATGGCGC 	
      9277	    33	 100.0	    33	.................................	ATGGATTGCCAGTCCCGCCGTTCCGTGGCGTTG  	
      9343	    33	 100.0	    35	.................................	CACGAGAACGTCATCAGCGTAAAGCGTCGCATCAT	
      9411	    33	 100.0	    34	.................................	AAGGAGGCACACATGCAGACCATCGACAAGAAGA 	
      9478	    33	 100.0	    33	.................................	GCCTTGATAATCTCCTTGGTATCAAAAGCGAAA  	
      9544	    33	 100.0	    34	.................................	TCGCATCGACGTGTTAGACCAGCGCTTGCATGCG 	
      9611	    33	 100.0	    35	.................................	ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG	
      9679	    33	  97.0	     0	......T..........................	|                                  	
==========	======	======	======	=================================	===================================	==================
        14	    33	  99.8	    34	GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT	                                   	       

# Left flank :   GCTTGTCGAACAACCCAAGATTGCGTCGCACGTAGGAAAGCGCGTCCTGGAACCACGGATCGCCCTCGTTGTAGGCGGTGGTGGTGGCGATCGCACCGATCGTGGCGGTCTGATGCTCGCTCCACTCCGCACGTTCCGCCCACATCTCACGGTCCGCCGGATTCGTCAGCAGCACCTGCGCGCACTTCGTACCCGGAATGTTGAACGACTTCGACGCGCTGGTAGCGGTCATAGACTGCCGCGCGGCCGCCTCGCTGATGGTCGGATACGGAATATGACGCCCCTCGAACACGAACGGCGCGTGAATCTCATCATTGAAAATACGCACGTCGTACCGTTCCGCCAGCTCGCACAGCCGCTGCTCCTCGGCCAACGTAAGCACCTTGCCGATTGGATTGTGCGGATTGCACAGCACGAACGCATGGCAGCCAGCCGCGAACGCGCGTTCGATGGCGTCGAAATCGAACACCATCAACGGCCAGCTGTTCCTGACGGATATC
# Right flank :  TCGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTTCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTCCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGG

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [7,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.30,-7.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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