Array 1 2272-2433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2272 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 2338 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 2404 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CTAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGA # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9938-11298 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 9938 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 10003 30 100.0 36 .............................. TTGGGTGGCGCTGTCGCGCACTCCCTTGACCCTCAA 10069 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 10136 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 10204 30 100.0 37 .............................. CTTCAAATGGGATGACTCTAACTATATCAGGATTTCA 10271 30 100.0 35 .............................. ATTGAAATGATATGCGACTGGAAAGCTGCGGTGAT 10336 30 100.0 36 .............................. CGCTTTCAAACGCCATTAAATCGTCACCTCCTCGGT 10402 30 100.0 37 .............................. TCTGGAACACAAATGAAAGGAGTAATAACTGGATGAA 10469 30 100.0 38 .............................. TCCGTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 10537 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 10602 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 10669 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 10735 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 10802 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 10869 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 10934 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 11000 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 11067 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 11133 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 11199 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 11268 30 76.7 0 ......GC...G.T...G.AA......... | C [11279] ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 355989-355292 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355988 30 100.0 36 .............................. CGAGGCTATTTGGAACAGCAGAAAGCCGGAGGCAAA 355922 30 100.0 37 .............................. AAAGCAGCTCGGCTAAAATAAACATGGTTCGCAAAAT 355855 30 100.0 37 .............................. GCTTCCAAATCACAAAAAGAAGTTTCAGCAAACAACT 355788 30 100.0 35 .............................. ATTGACGTAATGCTTTTTCTAGTATGTTTTTAGTC 355723 30 100.0 35 .............................. TTGGCGAGGTCAAGTTCCGTTACAAATCCGTAACC 355658 30 100.0 37 .............................. TTACTTTAGCTGAGTACAAGGAAATTACAGGAGAAGA 355591 30 100.0 37 .............................. CAGCTATCTTGAAAGGTGATTGGAAAGGCGCTTGGGA 355524 30 100.0 36 .............................. CATTTTTGGCAGATGATATTACACTTTTTAATATAT 355458 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 355390 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 355321 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCCGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCATTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAACTTCGCTGACGCTTTTTGCTGCCACTTTTTGAATGGGTTCAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTATATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTATTCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1052869-1054773 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1052869 30 100.0 37 .............................. TGCTGATAATGCGTTAATTATTGACACGAAAAAATCT 1052936 30 100.0 36 .............................. ATCGCGGCCGTAGATGATGTGTACGGAACGTTTCAC 1053002 30 100.0 37 .............................. GCAACGATGAACTCTAATGTATCGTCGTTGCTGTCTC 1053069 30 100.0 38 .............................. CATTTTCCGCTTGGTGAAGCACTAGAAGAGATGCGCAC 1053137 30 100.0 37 .............................. ACTTGGTTGAAAAACCTACTGATGAAAAGATACGAAA 1053204 30 100.0 37 .............................. TGTTTTCTTGAGGTTTTTCTAATGTTAACTGTAAAAT 1053271 30 100.0 36 .............................. TCAGTTGTTTCCTGCTGTTTTTCTTGTGTATCCCCC 1053337 30 100.0 36 .............................. CCACGATGTCATGACATTGTATAGACGTTCCAGATA 1053403 30 100.0 36 .............................. TGTTTTTTCGGATAAGGATTTTGAGAGAGTATTAGA 1053469 30 100.0 38 .............................. CTAATCTCGAACCAGTCCATAAAATAGTCATCGATCTC 1053537 30 100.0 37 .............................. CGGCTATCAAGCGAGAAATAAGCCTCATCGACAATCA 1053604 30 100.0 36 .............................. AGGATTGGAGAACATGCTGACCAACATGTTCGTCCA 1053670 30 100.0 36 .............................. CTGTAGGTATGCGTTGTTCAACATAAGTAGGGAAAG 1053736 30 100.0 36 .............................. AGTCAACAGTTTCAAGTAATTCTGTTTGCTTTCCAG 1053802 30 100.0 39 .............................. TCAGAACTAGCGTAGAGGATAGAACAGGTAGCTATCGCC 1053871 30 100.0 39 .............................. ACGCACCTAGATCACTTATTACCTTATCTGAACTTCGAT 1053940 30 100.0 38 .............................. TGAAAAGTATATAAAGCATTTTAATATTGGAGGCGATT 1054008 30 100.0 37 .............................. TCCGAACGATAGCTTTCCGACACTTTGCCGATGGCAC 1054075 30 100.0 36 .............................. TCCCGCAGGAAACATCTCCTTTGATGAGAGTTTAAA 1054141 30 100.0 35 .............................. AAGGAATATTCGTTCGAATCGTTTTTGCCGCGTGA 1054206 30 96.7 35 ....A......................... TGGTAATATGAAAGTATGGGTAGATCAAGATTAGA 1054271 30 100.0 37 .............................. AACAATGCGGAAGTGATTCCGATTCCGACGCGTCCTG 1054338 30 100.0 38 .............................. ACCGATAACGGTGGAAGTGCTGTTTCAACTATCGCAGA 1054406 30 100.0 39 .............................. TCCTTCCTCATAAAACCCTATACCGAAACGTATGGACGG 1054475 30 100.0 38 .............................. TATCTTTGAGCATGCTTTTCACTTCCCGTTTGTCCGCT 1054543 30 96.7 36 .............................T CTTTTTCATTCATGAGTATTCCCCCTTCTTTGTTTA 1054609 30 96.7 39 .............................T TCAGCCGCCCCGTATCCATATGCTCGTACCATTGGATTC 1054678 30 96.7 36 .............................T TTGTGCGAATCATAAAAAACCCCACTCGTCCGAGTA 1054744 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 29 30 99.5 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTAAATAGCGGCTATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : CGTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCCTGTTTTATATCTTATGGACCGATTTTGCCTGTTTTTATCTTAGCTACGAAGATTGTCCCCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2529953-2532187 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2529953 30 100.0 39 .............................. CTCAACGATGAAGAATCCATACTATAATATCTGCAGATA 2530022 30 100.0 36 .............................. TTGTGTGAAGTTCTTTTTCTTCCCCTGTTGTTGAAT 2530088 30 100.0 35 .............................. TCGTACCATTCGACTTTGGTGTATTCGTTGTTGTC 2530153 30 100.0 35 .............................. ATGCGAGAAACAAATCACTTTCTCCAAACAAAAAA 2530218 30 100.0 35 .............................. TCTTTCCACGCTAATGATAAAAACCAAGCCATGAT 2530283 30 100.0 36 .............................. ATGGCCTTCACTGCGGAACGCGGCAATTCGAACCGT 2530349 30 100.0 37 .............................. AATGAAAGAAAACAAAGAAAAAGTCATTGACGTTTCT 2530416 30 100.0 35 .............................. GAGTCTTTAGTTAGGACGTTTTCTGATTCGGAAAC 2530481 30 100.0 38 .............................. CGCTACATATCTATCGAAAGGAGGGACGAGTATGGCAC 2530549 30 100.0 38 .............................. TGGAAAAGGAAGTCGGGCATTGGAAAGAGCTTTTCGAA 2530617 30 100.0 36 .............................. TTGGATATCCATACTTTTCTATCATGGCATGCTTCG 2530683 30 100.0 36 .............................. AGAACACCAGCAATAAATGATTCCCCCGGCGAACAA 2530749 30 100.0 38 .............................. AAGCTGGCAGCGTTCGGCAGGCGCTCCGCCTGTCGAGG 2530817 30 100.0 37 .............................. CGTCGAATTCGAATTTTTCGCCGTAAAAGTCTGTGCC 2530884 30 100.0 36 .............................. AAAGGTGGCCAAGGTGTTTTGAAGCGCGGCACCGTG 2530950 30 100.0 37 .............................. ACAAAGAGCTTGAAAAAATTCCGGTCCGCATCGACGA 2531017 30 100.0 37 .............................. TTTTCTTCTCGGAGCCTTTTCTTTGCGAGCCGTATTG 2531084 30 100.0 37 .............................. CACGATGAAACCACTAGGAATTGTCCGCAAAATCGAC 2531151 30 100.0 35 .............................. ATCGGTCTAACCGATAAACTAGTACAATATCGATA 2531216 30 96.7 37 .T............................ GAACTGTATGCTATATCTTTTTCAATATGGCTGAACA 2531283 30 96.7 38 .T............................ AATGCCCCGACTTGCACGCGATAAACCTTCCCTTGTGT 2531351 30 96.7 35 .T............................ TGTAGGGAAAGCCAGTGGATGGATCGCGTCTATTT 2531416 30 96.7 38 .T............................ AACAAGTAAATATGAATGAACACCAAGCTGCAGCTCTT 2531484 30 96.7 39 .T............................ ACGATAGAATCATGCTTCTATCTAATGAAATGATATTTT 2531553 30 100.0 36 .............................. ACATTTGCAAGGTGGGAAAATGAAGAAAAGTATAAG 2531619 30 100.0 37 .............................. GAGCCGAGTCGCCGCGTTAGTTTGGGGTTGAGCTAAT 2531686 30 100.0 37 .............................. GGCATCTCCCTCGAGGAACTAGCCGCCGCAACTGAAG 2531753 30 100.0 39 .............................. TGGAAGAAAAAGATTTCGAAAATAAAAATAAATAAGGGC 2531822 30 100.0 37 .............................. AATGGCTAGCGGTCGGGAAGCGTGCCGGCCTTTCTTT 2531889 30 100.0 36 .............................. CTCACACCCTACCAACACCTTATCCACAAACTTATC 2531955 30 96.7 38 C............................. ATATATCGAACCTTCACCAACATAGCTCGCTGCGTTGT 2532023 30 96.7 37 A............................. TCGGCTTGCCATCATCAGCGCGTAGGTCGCCATCCCA 2532090 30 93.3 38 C...G......................... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTTGGA 2532158 30 86.7 0 .T..................A....A..G. | ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.7 37 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : GGTGCCGTGTTGATCGAAATCGATGAAAAATGGATGTCAGGGCGCAAATACTTGGATATGGCTGAATATTGGAAGTGGCGGAAAACGAAAGAGCAAGGAGTCCGATCGGTGAATCAGGAGGCTCCGGCGATCAAGAGAGTGGGATAACCTCTACGCCGTGTCAAGGAGAACGTGGAATACCGGAGCGAAGTGAGGATATGCCGCGAAAGCTCCTTGACACGCCTGTTCCTTGACAACATGATCATTTGTCCGGGAAGGCGACCGGCAGGGAGACTTTCCGGTCTTACCTACCATACGTCAAGTCATCAGGTCCATGTTGTCTATCAAAGGGGAATTTACACAATAATTTGGACTTGACCCTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCGACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTTAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTATACTTGGAGGGGATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAAAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATCGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATATTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2541638-2543934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2541638 30 100.0 37 .............................. TCAAAGGATACAAATTGAGATGCTTGTTGCAGTACCG 2541705 30 100.0 38 .............................. CACTCACAATGAGCACCCTAAAAATTCAAGTATTCGTG 2541773 30 100.0 38 .............................. TATATAGATCAAACAACAACTCTCTTGGGAGTTCGTTT 2541841 30 100.0 37 .............................. TGGCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 2541908 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 2541975 30 100.0 37 .............................. AAGGCGTAAGAAAAGAACACTGATCATTAAAATTATT 2542042 30 100.0 35 .............................. TGATTCTTATACCACTTTGAAAAAGCGACAGAATC 2542107 30 100.0 38 .............................. ACACCAGGCATCTTGAAGACCGTGACACTCTTCGTCCC 2542175 30 100.0 35 .............................. ATGACGCAAACCAACGCCACTAATTGCGTCCTCGC 2542240 30 100.0 35 .............................. TTTTCGTTTTGTTTCCGCAGCGAATGAACGTTTAT 2542305 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 2542371 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 2542438 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 2542504 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 2542573 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 2542640 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 2542705 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 2542773 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 2542841 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 2542908 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 2542974 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 2543041 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 2543108 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 2543176 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 2543244 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 2543311 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 2543378 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 2543444 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 2543509 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 2543574 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 2543640 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 2543707 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 2543772 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 2543838 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 2543905 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGCATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2553171-2553530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2553171 30 100.0 37 .............................. TCATCTTACTAGAGACAAAGAAGCTTTCCACGTCGGA 2553238 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 2553303 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 2553368 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 2553434 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 2553501 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 99.5 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : AAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATTAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCTAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACAGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 8 3859799-3859960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3859799 30 100.0 36 .............................. ATATCCTGCATATTCTCCGCATACGTCAGAGTTAGA 3859865 30 100.0 36 .............................. ATTTCAACCTCAAGGCTTTCTCCGTTTGCCTGTTCA 3859931 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 98.9 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TAACAGGATATCTCGAATCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGAATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCAGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCATGTTTAAGGAAAAAGTTTTGCTTTTGCCATCTCTGTTTTATTTATTACAATCATTAATTTAGGTGTGGAG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3867477-3868568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012712.1 Parageobacillus thermoglucosidasius strain DSM 2542 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3867477 30 100.0 35 .............................. CTTCATCCAGCGTCAAGTCGTTCATTTCACTTGTC 3867542 30 100.0 35 .............................. TTGGGTGGCGCTGTCGCGCACTCCTTGACCCTCAA 3867607 30 100.0 37 .............................. TTTCACATTCCGGCGCTTTTGTTTCAAGAACAGCCTC 3867674 30 100.0 38 .............................. TCGACGGCCCCTGAATTAGATCAGCTTGGTGGTATCTC 3867742 30 100.0 35 .............................. TTCGAAGAAATGATTTCTTTGCTATTCCGGCTCTC 3867807 30 100.0 35 .............................. AGAATATCCATTGAGTAATTGCACTCGACCATGAT 3867872 30 100.0 37 .............................. CACTATTTTTTGTTATTTCGAGTTGAGCAGCTGTTGT 3867939 30 100.0 36 .............................. ATGAAAGCACCTTCTTTAGAACGCGACGCTCTCATC 3868005 30 100.0 37 .............................. GAAGTAATTAGTCAAGCAATTAGGTGGCAAGGCATGT 3868072 30 100.0 37 .............................. TCACGTTTCGAGATATGAGAAAAGAACACGGTCATTT 3868139 30 100.0 35 .............................. TGAAGCACCTTGGCGTGAAGAGAAAGTTAAAAAAG 3868204 30 100.0 36 .............................. TGACTTCTGCCAAAATCGCTCTATCCTCATTGGCTT 3868270 30 100.0 37 .............................. CAGGCGCAGCGAACGCCTTATAGGCACAGCGAACGCC 3868337 30 100.0 36 .............................. TCAAGCCGGCCGATTCGCATTCTTTTGGCGGACGAG 3868403 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 3868469 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 3868538 30 76.7 0 ......GC...G.T...G.AA......... | C [3868549] ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.0 36 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AACGGCCTGCCGAGCTTGACAGTGGTTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACATAATGCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTCCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATATACTAAACATAGCTTGCTTTCGAAAAAAGCTGATATACCAACGCTTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //