Array 1 907-2255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKO010000044.1 Bacteroides fragilis strain DFI.6.19 LKAJDPIB_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 907 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 984 47 100.0 30 ............................................... AAGTACAACATCGATACCGATACCCTTTCC 1061 47 100.0 29 ............................................... GATCGTGTTTGCGGAGCATTACCAAGAGG 1137 47 100.0 29 ............................................... GCTATGTTTGTCGGAGCAGTAATAACGTC 1213 47 100.0 30 ............................................... GTCGAGTCCTACCGTAAATTTGGTGTATAC 1290 47 100.0 29 ............................................... GGATTAATTTTAAACCAAGAATAAGTTAA 1366 47 100.0 29 ............................................... AAGTTTATTGAGGGTCTTTCTAACATTGT 1442 47 100.0 30 ............................................... TTCGTATCAATACCGATCTGACGAACATTA 1519 47 100.0 30 ............................................... CGAACGGACAAAATTACGCTGCTCAGGTTA 1596 47 100.0 29 ............................................... CCGCCGGAGGCATTATAAAGTTGTGCATA 1672 47 100.0 30 ............................................... TTGACCATGTAAGCTGTCTCTAAAGGACCC 1749 47 100.0 29 ............................................... CGCTGTTCACGTGAGGTCTGTGATGTATA 1825 47 100.0 30 ............................................... AGGTCTCCGAGTTTGGATGGGGTTTTGACA 1902 47 100.0 29 ............................................... TGATTTACTGTTCGACCTGATGCCAGACA 1978 47 100.0 30 ............................................... CAGACAATGGAACATCCACATCCTCCTTTA 2055 47 100.0 30 ............................................... GTTTAGCGCAATAATCATAGAAAGAATGAA 2132 47 100.0 30 ............................................... CCAAAGATCTTTGTTCCAATTGGCATAACG 2209 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : ATTCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 32728-31641 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKO010000022.1 Bacteroides fragilis strain DFI.6.19 LKAJDPIB_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 32727 35 100.0 35 ................................... TTGCTACTCTCTTGCTGTTGTTTTTTACTGAAGTT 32657 35 100.0 37 ................................... AACTCTTAAATTATTTAATTCAATTTCTTTTTCCACC 32585 35 100.0 35 ................................... AAAATTAATAAATAAACTTCCATAGCTTTTATTTT 32515 35 100.0 35 ................................... GATATTTTCAATCATATCATCCGTTTGCCGATACT 32445 35 100.0 35 ................................... ATAAATCATTTAATTAAAAAACATTACTATAAAAA 32375 35 100.0 33 ................................... ATAGTTATTAGGTCAGAAACAGCTCCCGTTTTT 32307 35 100.0 37 ................................... CATATATATCATAATTTCTGATGTCTCTTTTGCTGAT 32235 35 100.0 35 ................................... GAGCGTCCAGCATTTCCGATTCAACGACTAAGAAA 32165 35 100.0 34 ................................... TTTGGAGCATTGTCTATCATAAAAATTCCGTAAT 32096 35 100.0 34 ................................... AAGCCATCCCTGATGAGTTTTGCGACAGGAAAAA 32027 35 100.0 37 ................................... GAAAATCAAAGTTAAATTTTCCTTCTACAAAAACTTT 31955 35 100.0 33 ................................... ACGCTTTTTCCAGAAGCCGGTTACGCCAATTCT 31887 35 100.0 36 ................................... ACAAATTTCTAAGAACCAGAGACTGTGCCGCTTTGT 31816 35 100.0 34 ................................... AAATATGCCTGGGTACGCATATTAATTGTGTCAT 31747 35 100.0 37 ................................... TTTCCTGTCCCGGTGTGAGCTTGACGCGAACTTTCAT 31675 35 97.1 0 ........A.......................... | ========== ====== ====== ====== =================================== ===================================== ================== 16 35 99.8 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACAGTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGCATGTAGATGTATTCCAATATAAAAATTTAACTACATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCGGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 8-668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCKO010000013.1 Bacteroides fragilis strain DFI.6.19 LKAJDPIB_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 8 47 100.0 30 ............................................... AAACCGTTCAAATACCTACGTAACTGAGTG 85 47 100.0 29 ............................................... ATTCATCTTAGCAGTATTAGTAGCATCAA 161 47 100.0 29 ............................................... ATATTTCTATCCTTACAATATTCCAAAAG 237 47 100.0 30 ............................................... AACTACCACCAAGGGCCTTATTGTTCATAA 314 47 100.0 30 ............................................... ATCTTTGTTCCAATTTGCATACCTAAGCTC 391 47 100.0 30 ............................................... GAAAATCGGCCGAACGGCTTAAGATGGTTA 468 47 100.0 30 ............................................... ATTTTTCGGTGACGTTGTGCCCGAAGAAGG 545 47 100.0 30 ............................................... TGTTTCGACTTGTGGAATAATACGATATGC 622 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : GCATCAAG # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //