Array 1 8282-8907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGE010000007.1 Longicatena caecimuris strain D55t1_190419_F3 NODE_7_length_114233_cov_76.2717, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8282 36 100.0 29 .................................... ATGTTTTCTATGTAATTTATTATTAAATC 8347 36 100.0 30 .................................... CTTTTTGTTTTAGTCCTTTTGACTCTCTGA 8413 36 100.0 29 .................................... TGCCTTTGCGTTCCTTACCAGCGCATTGG 8478 36 100.0 30 .................................... TCCTAATTTTAATAGTCTAAGTTCTGATTC 8544 36 100.0 30 .................................... GTTATGTCAAAAAGATGAATTACCTGTATT 8610 36 100.0 30 .................................... CTGTTGCATCTGCACCATCTTCCTGCTTAT 8676 36 100.0 30 .................................... TTCGTCCTTTGGCACCTGAATGTCAGAAGG 8742 36 100.0 29 .................................... TGCCTTTGCGTTCCTTACCAGCGCATTGG 8807 36 100.0 29 .................................... TATCATTAATAAGATATTGTCAATGACTT 8872 36 86.1 0 .........................AT.AT.....T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 AATAGAGCTTCTAGTAAAATGAATTTGTGCTTATAC # Left flank : CTACACAAATTGAATTAGAATTTGCTATTATTGCAGATTATATAAAAATAAATTCTGAGAAAACTTTTTATCTGTTAGTAAAGCATTTTGATTACTGCTTAGATATTTCACAAATGAAAAGAATATTGGAAATGTTTCTGAAGCTTGGAAATGTTAATGTGATATTTTTTACAAAGTCATTTGAATTATATAATTATGTAAGAGATGATTATCAAAATTATATGGTTAGTGAGGATAATTTATACAAATATGAGTTAGATCAAGACATTATTAGATTTGATCCATACTTATCTGATTCAGAAAATAAATTTTATCAAAACATTTTACAAAAAGAAAAAATATATAAAGATTATTGTGAAATAACCAATGAGAAATTTTAAAATTTTAAGAAATAGAGAAGTATTTTAGGGAATAAATCAATTTTTAAAATAAATTTGCCTATAAATAATGTGAAAAAAGCTTTTATTTATAGGCTTTATTTGGGAAAATGCTTGCTATCT # Right flank : TAAAAAAAGTTATAATATTCTATTTCTCCAAAATGAAATAATTTCGATTTTGGAGAATTCTGTTAGAAAAGAAGTTTCAACAGAATCTATCACATATAAATCATTTACGCAAAAAACCTACCTGAACAAATCAGAAAATTATGATAAAGATAGTATTGAAATATATCATGTGCACGGATCATTCTTCCTGTATTTTCTTTCTTTACTTATTGCATCATACCCTTCCATCTTCATTCGCATATGTCGAAACTATAGCAATTCTGTCAATAAAAAGATAGCAAAATGGCAAATTCGGCAGATAACTGGAAAGATTGGCATAAGGGAAAATGAAAGGATTTTCAACATGTAAAAAAAGACAAAAACCTTAATGAAATCGCTTGCAAAAAACATAAAATCGTATACAATATAACTATACTAGAAGTGAAGGAAGGAGCGTGAGTCACATGGTAAGAGAACAAGGTGTAGACAAAGCGCTCAAGGACGTACCTGTAGCAAGCAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAGCTTCTAGTAAAATGAATTTGTGCTTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9606-9375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGE010000008.1 Longicatena caecimuris strain D55t1_190419_F3 NODE_8_length_105867_cov_72.5773, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 9605 33 100.0 33 ................................. ACCCAAACTTAATGTAAATGTGCCGCTGCCATC 9539 33 100.0 33 ................................. AAAAGAAAACGGATAAGTCGAAGGAAGTTTCAA 9473 33 100.0 33 ................................. TCTTTCGACGGACACCATCGAGGTGATGTCTTG 9407 33 93.9 0 ..............T................T. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 98.5 33 GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Left flank : AGGTGATTTAGATGAATATGCACCATTTTTGTGGAAGTGATGATTATGATGGTATTAATAACATATGATGTGAATACAGAGGATAAAGCTGGAAGGAAACGTTTAAGGAAGGTAGCTAAGCATTGTTTAAATTATGGATTGCGAGTACAAAATTCAGTTTTTGAATGCAATGTGAATCAAAAAGAATATGTTGAATTGCAGCATGTATTATCAACTGAAATCGATGAAAGTAAAGACAGCCTACGCTTCTATCTTTTAGGGAATAATTATAAAAATAAGATTATTCATATAGGAGCAAAACCATCATTCGATGTTACGGAACCTTTGATTTTTTAAATGTTGGTGCGAATGTAAAGCTAACATAAATTTCTTAGGACATTCGCACCTATTTTTGATTATTTTAATTGGGTTTTTATGCTTTTATTTGATAGAAATTTGATTTTTATGTTAATTTAATGCAAATATTGTTGTTAATGTCAAGATTAAAAGCAATATTTGCT # Right flank : TGTTGATTTTAGATGAAAAATTGTTGAGGATAATCGGTCGTACCTCTTACGAGAAATTCAGATATCTATATGTAAGTATTTACAAATAAAAAAGGCAAACCCACTTTGGATTTACCTTCCATAATAACGTATTATTCTGCCTTTTCTGTAACATCCTTCATCTTCTGTAAACCAAAGATAATAAGTCCACCAACTACAAACCATAAAATATCAAAGGAACTAAAACTCAATGGTGCTTTTGGTGTTGACAATGTTTGTGGTCCCATGATGATGGCATAAAAAGAACCAATCATCATACCGATTATTAGAAATATCATAATCGAACGATGTTTATCTAAAGCCCATTTGATAACCCGCACTACTGAAACAATTCCCGCTAAGATCCCCAATGCAAAGACAATCAAGATTGGCAGATAATCTAAGTTAAAGCTAATCACCGCTTTAACAGCACTGATAATAGGAACATAGAGTCCGAAAATCAATAATAAGGTAGAACCACT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGTACCTCTTGTGAGGTACGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22851-22097 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPGE010000008.1 Longicatena caecimuris strain D55t1_190419_F3 NODE_8_length_105867_cov_72.5773, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 22850 31 100.0 33 ............................... GCTTAATTCGGGGTCGTTGCTAAGTTTCCATGC 22786 31 100.0 36 ............................... AGCAGTTCTACACAAACCATCAGGTAAGGAACCTAA 22719 31 100.0 36 ............................... AAAAATCTTATTAGTACCAATATAACGGTTGGTGAT 22652 31 100.0 34 ............................... TCATGTCCTTTAATCGCAGTAGAGTCATCCATCC 22587 31 100.0 35 ............................... CTAATACTACATGAACTTGGACATATATTTTTACA 22521 31 100.0 33 ............................... CTTTAGGTTTTTTGCAGTGGCTCTTTCCGCACG 22457 31 100.0 37 ............................... TTTAACATATGTTGTTTTACCTCCTGCTGGTGGACCA 22389 31 100.0 34 ............................... CTGAAAGAAACATTGAAAAAGGAATCTGCAAAAG 22324 31 96.8 34 .......C....................... CCGAGTATTTACTTAGTGCTATCACTATGGAACG 22259 30 80.6 36 ........C-.CG...T.T............ ACAAAAAAGTAGCTCATAAAAGTATCATCTTTACAG 22193 30 74.2 36 A...T...C-.CG...T.T............ TGCCGGCGTTGCCAATTCGTGATATTCGTTTCTATT 22127 31 87.1 0 .......C....G...T...........T.. | ========== ====== ====== ====== =============================== ===================================== ================== 12 31 94.9 35 GTCGCATTTTGTAAGAAGCGTGAGTTGAAAT # Left flank : TTACGAAGGAACGCTTAGAGGCAGTGCGTGAGGCAGATGCAATCTTGCGTGAGGAATTCCATAATGCTGGATTGGATAAAAAGGTTTGGCAGTATTTCACAGTTGTGCCTGATTTTAAATCTGTAGGTGTACGTGATAATGCGAGATGTTTTGAATATCCTGTGATTTTACGTGCGGTGAATACGGTGGATGCTATGACGGCGACGATTGAGCAGATTGACTGGCCGGTATTGTTGAAGATAACGGATCGTATCTTGAAGGAAGTTAAGAATGTGAATCGTGTTTGTTATGACCTGTCACCAAAACCTACGGCGACCATTGAGTGGGAATAAAAATCGATATTAGATAAATTGGTGCGAATAACAAGCGTACAGTAGAATGCTAGGAGATTCGCACCAATTTGTCATATTAATATTGATATTTATAGAGCTATTTTTCTAAAATTATATTAATGTTAAGCGTTTCTTCTTTAAATGATATGATTTTAATGAAAATTTGCT # Right flank : GTTGCATTTTGATTCATGTAAATTATAACATTTATACAAATGTATAATTTCCTCTTCATTAAGATTTTTAAGGATTAGTAACACCATCGGCATGCACATAAATCCAAACACACCAAATAATTTACCGCCTGCATACATACATAACAGCATTAACAAAGGATGCAGTCCTAACTGCTTTCCCATTAATTTAGGCTCTACTATATTACGTATTAAAGTAATAATTAAATATAATATTAATAATCCTATGGCTAATTTATGTTGCCCTTGGACATAAGAAAACAGAATCCAAGGTATCATAATACCTCCGGTACCTAATACGGGAAGTACATCAAAAACCGTAATGCCTAAGGCTATCAGCCAGGCTTTTTTTATATCTAAAATAGAAAGACCTATGCCTAATTCAAAGAATGTTAATAGCATTAATTTGATTGTAGCTATAAACATATTTAAAAAGGTATGAGTGGCAAAATAACGTATAGATAATATGATTTTTTGTGTTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTTTGTAAGAAGCGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: R [matched GTCGCATCTTGTGAGAAGCGTGAGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //