Array 1 50-688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMNU010000075.1 Bifidobacterium asteroides strain wkB204 wkB204_S63_R1_001_(paired)_contig_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. CACGCCCGAACCCCTGCTCACGAGCGCCGAAC 111 29 100.0 32 ............................. CCGCAATCCGAAGCGGTGTACTGTCCCTTCCT 172 29 96.6 32 ............................T ATAGCACAGCGTGGGCACAGTGCAACTCATGA 233 29 96.6 32 ............................T AGCACTAGACGGAGAGGATATTAGCCATATAG 294 29 100.0 32 ............................. CCTGATGCAGCCAGCCGCGCGTGGTAAGCAGT 355 29 96.6 32 ............................G CCCAATGGCGTATACCGACAGGCTACGATTTG 416 29 96.6 32 ............................T ATCATTCAGGACAGGGCGATGCTCTTCAGCAA 477 29 100.0 32 ............................. AGGGTCATCACACCCACCCCCAAGACCAAGAC 538 29 100.0 32 ............................. TGGATCGTCATTGCCGGCACCTCCCCACGGGT 599 29 100.0 32 ............................. CAAGGCCTCGACGTGTACCGGGTCGGGGACAT 660 29 93.1 0 ............G...............T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : TCCGCGGGGATGATCCCCAAACCAGCTATTGAAATTCACAGCAGAAGCAG # Right flank : GAGAATCGCCATGAAGCTCATATACCTCAAGGGGGGGGGGGGCGCCGCCCGCGGCGCGGGGGGGCGGGGGGGGGTAGGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52041-51830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMNU010000015.1 Bifidobacterium asteroides strain wkB204 wkB204_S63_R1_001_(paired)_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52040 29 93.1 32 ............C...T............ GTTCTCCCAAGGAAGCACAGCTTCGGAAGTAG 51979 29 100.0 32 ............................. GAGAGTAGCAGCGTTGTGGCTGACAGTAATCT 51918 28 93.1 32 .................-..........C CCAGGGATGGGGACGATCATTTGATGGACGCT 51858 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGCTCCCCGCATCCGCGGGGATGATCCT # Left flank : CCCCCCCCCCACCCCCCCCCCCCCCCGCCCCGCCCGCCCCCCCCATCCCCACCCCCCCCACCGCGCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGCCCCCCCCCCCCCGGGGGGCCCCCACCAGGCATCGCGCTGCTTGTCAGACTGCCAGG # Right flank : GTGTACCAGGGTCTGGACTGCCAGCTATTCACCCCTCCCCCCTCCCGCATTGGCAGGGATAATTCTGAGCCCTAGCGCTGATGGGAGATATAAGCGCTTCTCGCATTTGAGACGATAGGCAATTCTTGATTGCTGTTGTGTTTCCATTGTGCCTCATTATTGGCATTTAGCACGCGTTCTGCTGGATGCCGCCTGTGCGCGATCAGCTTCGCGTTTGCAGTGGTTGCGGCTTTACGCCCGCACTGCGAACGTGAAAAGACCAATGAGGACTTCCCAATGTTCATCAGGTACAAGTGGGTTAGTTGGAGCTCATGTATTCAGATACTCCCTAAAGGGTTCAAGCTCGATAAACTCGGGGTCGTTGGCCATTTTCCTGACTTCGGGCGGGGAAAGCCGTACCAGCTCGGGGTGGCCATATGCGGCGTCAAGCACGCTCTCGATGGCTGCCAGCGGCTCGCCTGCTGTGAGGGCAACCTCCGCGTCGTCCTCCATCAATTGAT # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 20097-26409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMNU010000018.1 Bifidobacterium asteroides strain wkB204 wkB204_S63_R1_001_(paired)_contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20097 29 100.0 32 ............................. TGACATTGGAACTTGACGCATGGACCGAATAC 20158 29 96.6 32 ............................C CACTTATCGCGTTGTTCGTCCGACTGCCAGGC 20219 29 96.6 32 ............................C GACGCTAATATAGTTATCTATACCCGATCTGA 20280 29 96.6 32 ............................G CTGCTTACGGGCAAACTCAGCCCATCCGGCCA 20341 29 96.6 32 ............................G GTTGGCCGTCAACTATATTTACAAAGTTAACA 20402 29 100.0 32 ............................. GCCCCGACGTGCTCATCGCGTCATGGGAGGCT 20463 29 100.0 32 ............................. GATACACACCCACACCCTTATCAGTCGATAAA 20524 29 100.0 32 ............................. ATGTCAATACGGACTGTGACCGGGTGGTTCAA 20585 29 100.0 32 ............................. GGGTTTGGCTCCCCATCGTGATTCGACGCGAT 20646 29 100.0 32 ............................. TGCACAGCCTTGAGCAATGTATCTACATAGTC 20707 29 96.6 32 ............................C CTGGGCGACTCGCACAATGCCAGGCTGCGGGT 20768 29 96.6 32 ............................C CACAACTCGGCACTACGGGCCTGCCACCGTCC 20829 29 100.0 32 ............................. GGGTGGTGTTGAGCCCGTTCTGATAGGCTGTG 20890 29 96.6 32 ............................C GGCCACTTTCCGTCCTTTATATGAAAATCAGT 20951 29 96.6 32 ............................A TCTCGCCATCGTAAAATTGCTTTCGTTATCCC 21012 29 96.6 33 ............................A TTTTGAATGGCCAACCGGTGACTGGGCGAATTT 21074 29 100.0 32 ............................. CGCAGCTCCACAGTTTTCCAACCACAAGAATC 21135 29 100.0 32 ............................. GCCATGCGGACAGCGGCAACCGCGAAAAACAC 21196 29 100.0 32 ............................. AGGCCTTGTCGGAAAGCCAGGGCGGCTGCCCG 21257 29 100.0 32 ............................. GTCCAGCCATTGCCTGGCCCATGCCGTGTCAC 21318 29 100.0 32 ............................. CCTTGATGCCATGGCCGCCGATCCCGTCAACG 21379 29 100.0 32 ............................. TGATGACGCTTGCCTGCGATCCGGCTGGGAGG 21440 29 96.6 32 ............................C CATCCTTGCCCCTTGTCGTCGAGCAGTATGGT 21501 29 100.0 32 ............................. AAGGGCATGGAACTTTCGTCCCATGCCCTTAT 21562 29 96.6 32 ............................C GATATGCTTGTGGAAACCACCTCGGAAATATT 21623 29 100.0 32 ............................. ATGGTCTGTCTTCGACTTTAGTACGGCCAACC 21684 29 100.0 32 ............................. CGTTGAGACCGTTGGCTTCGGCCACTGATGCG 21745 29 96.6 32 ............................G CAGATGGGATACTGTCTTTGCGTCGTCTACGA 21806 29 100.0 32 ............................. GCCCACCACTAAGCATAATCGAAACGCTATGG 21867 29 100.0 32 ............................. GTAAGATTCCGGCCATCCGACTGAATCGAATT 21928 29 100.0 32 ............................. CCATAGCCGCCATGACGCCCGACGAAAGGGAG 21989 29 96.6 32 ............................C AACAAGGACATCCTCGAACGTTCGATCGCCAC 22050 29 96.6 32 ............................C CATTGACCGAGAAACTGGCGTCGTCGCCTATG 22111 29 100.0 32 ............................. TCGGCAGAGCCTATCCTCGTAAAGTAGATAGT 22172 29 96.6 32 ............................C TGTTTTCATGCACATCAGGACTGCAAGCAATT 22233 29 100.0 32 ............................. ACAGTAGCGAAAAGTGGGCATACTTGCCAAGC 22294 29 96.6 32 ............................G TCGTCACATCTGAAAACCAGGTGGTTTATCTC 22355 29 96.6 32 ............................G CGCCAGTGGGCAGAGTATGCAGCCAAGAAACT 22416 29 96.6 32 ............................G CTCATATCACGGATATACACGCTATCGAGATA 22477 29 96.6 32 ............................C AATGCGGTGATGTTTGCGATTGGCCCCCATCA 22538 29 96.6 32 ............................C AGCCGGGGGAGACTCTGGCAGAGACGTTTAGC 22599 29 100.0 32 ............................. AGGACTGAAACAGCGAATGGCCGATTTACGAC 22660 29 100.0 32 ............................. TCGCTAATGCCGAGGTCGCGAATGACTGTTTA 22721 29 100.0 32 ............................. TGTCCAGATAAGATATTACAGTATTGCGAACA 22782 29 100.0 32 ............................. TCCAACCAGAACGACCTGACGCGGGACAACAA 22843 29 96.6 32 ............................C GATTCGCACGATATGGTCATCGCTTATCTTTT 22904 29 100.0 32 ............................. GTGGTGTTCACCAGATCAACGCCGCCATGGAC 22965 29 100.0 32 ............................. GGGAGGCCTAATATGGCAAATAAATTAAAAAT 23026 29 100.0 32 ............................. GCACATCATCCCATCTACTCATGACTGCACCG 23087 29 100.0 32 ............................. GGCTCCTCTCAATACTTCATAACTTCTGCATT 23148 29 96.6 32 ............................C ATGTCGGCGCCCAGCAGCGCCATGCCTTTTAG 23209 29 96.6 32 ............................G CTGTCCTACGGTCGCTTGCAGTTTCGCCAGCT 23270 29 96.6 32 ............................C GCCCTTCTCAAGGCAGACATCATAGATTCTGG 23331 29 96.6 32 ............................C AAAATCGTCGCTATCAAGATTCTTCGGCGCAA 23392 29 96.6 32 ............................C CATGAGCACCATCGATATGCCAGGGCACCTCC 23453 29 96.6 32 ............................G GCAAGGACGGCCCGGAGGGCAAACGTGGTCCC 23514 29 96.6 32 ............................G TGCCGTCGGCAGCCCCTGCGTCGACATGTCGG 23575 29 96.6 32 ............................C GGATTCACTACAGCGTCGAACGTCCATATTTT 23636 29 96.6 32 ............................C TTCCCATAGAGGTTGTTGAGCATAAGCTTCGC 23697 29 96.6 32 ............................C TGGTTTGCCTTCGCCTCGGCGGTCAGAGCCTT 23758 29 96.6 32 ............................C AGGCCCAGGACGAAGAGACCGTGGCCAAACTA 23819 29 100.0 32 ............................. GCACGTTCGGCACGTCACCGGACACGATTGCC 23880 29 96.6 32 ............................G GACGGCTTGTATATTTCGAGGCTCTTGTAATT 23941 29 96.6 32 ............................G GACCTCGGTAGCAAGATCAGACAAAAGGCCTA 24002 29 96.6 32 ............................C CGCCACGGCCAACAATGGACGGTCATACAATA 24063 29 100.0 32 ............................. CGTGTTCTTGCTCGCCACGTATCTGCACCCTG 24124 29 96.6 32 ............................G TGGCGGCATCGTATGCCGGGGCTCCAGAAGAG 24185 29 96.6 32 ............................C GCCTGATGCATCGGGATCCGTGCCATGTTGTC 24246 29 96.6 32 ............................C CTGGGTCTGAAGATTGCTGATGGTCTGCGCCT 24307 29 100.0 32 ............................. ACAAGTCAGCTTGGGGAAACTAAGTGCATTCA 24368 29 100.0 32 ............................. ACGCATAATCCCATCTACTCATGACTGCACTG 24429 29 100.0 32 ............................. GTATTCACAGCTTTCTGGCAGCAGATCTTCAT 24490 29 96.6 32 ............................C ATATGAAGCCTTGATCAAGGGAAGGTGGAAGA 24551 29 100.0 32 ............................. GATAAGCGCCATGAAGCTCATATCCCTCATGC 24612 29 100.0 32 ............................. ACGGCCTGGGAGCCTGATCCTTGGTCAGCGCA 24673 29 96.6 32 ............................C TGAACCAGATTTACAACAAGATGGGCATCAGA 24734 29 96.6 32 ............................C ATTGATTTCACCCAACAGTCAACGGCCAGATC 24795 29 96.6 32 ............................C AAGACCTACCAGCGTGAAATGGCAGCCGCATC 24856 29 96.6 32 ............................C ACTTCCAGTGTAGTGGAGCGGCACGGATAATA 24917 29 96.6 32 ............................G AGGTCAGCGTATGGGGCTGGGATGATCATTCG 24978 29 96.6 32 ............................C CCTCCATCTGTACAGCCAACACTGCGCAATTG 25039 29 100.0 32 ............................. TCGGTCAAATTCGCAACGAGGACGACCGCAAT 25100 29 96.6 32 ............................C CAAGTCGAGGACACGCTCCAGGATGTGGCGGG 25161 29 96.6 32 ............................C TTACTCTTCTTCACATGGACGCGAGTCGGGCA 25222 29 96.6 32 ............................G GTCTGCACGCTGGACTTGCCGAAGCTGTAGAG 25283 29 100.0 32 ............................. TATGGAGACACCAGCCTTGCGGCGAGCGCGGT 25344 29 100.0 32 ............................. ACCGGTGCAGCAAGTATACGGCAGAAGTACCC 25405 29 96.6 32 ............................C TGCTTGCCGCGATCCTGGAAAGCCTTGGCATA 25466 29 96.6 32 ............................G GGATTGATGTCGCAGCAGACGCAAGACGAGGA 25527 29 96.6 32 ............................G GTCGGGGTCGACGCTGCCATCAGCTGGCTGCA 25588 29 96.6 32 ............................C CGTCATGCCGCTCTATTACATGGATGCGCAAA 25649 29 96.6 32 ............................G TTCATAGACGATTCCAAAGCCGACATGGTGGG 25710 29 100.0 32 ............................. GAGCACTCCAGTTTCAGCATTGACCAGGATTC 25771 29 100.0 32 ............................. CAACGGCTTAAGAGCACTGCTGGTTATTGGTC 25832 29 100.0 32 ............................. TTGCTGGTTGCTGGCCACTATTGCCAGTGTAG 25893 29 96.6 32 ............................C TGTCGTTCAGGCAGAAGGTCGATTCAGGTTAC 25954 29 100.0 32 ............................. GCGATTCTCAGGGGCAAGCATTTGAAGAAGGA 26015 29 96.6 32 ............................G CTCATGCAAACGGCGCGTGTACCGGCGTCTGC 26076 29 96.6 32 ............................C CGGACAAGTCGACATCCTTGCCATCTTTTTCC 26137 29 100.0 32 ............................. GTCCTCCAGCGTGAGTCTGGCATCCGAGGCGA 26198 29 96.6 32 ............................C GCCTTGTCTGGAGCCGGATCCTGGCTAGTAAA 26259 29 100.0 32 ............................. TGTCATGCGGTACGGTTCCGGGCACATGGCTG 26320 29 100.0 32 ............................. AATCTGTATGGAAAATTTCGCCCAATCTCCTG 26381 29 75.9 0 ...........C...C.....CC.G..AC | ========== ====== ====== ====== ============================= ================================= ================== 104 29 97.9 32 GTGCTCCCCGCATCCGCGGGGATGATCCT # Left flank : GGGCCACGTCACCGCTAGGGTCCGGGATCGACTTTGGGAACGCATCACAGGGCAAATCCGAACTGGCAAGGCCATAATGGTGTATTCCGCTCGCAATGAGCAGCATCTGGGTTTCAAGGTGCATCGCTCGGATTGGAACCCAGTTGACTGTGAAGGATTGGCCCTTATGGAGAAGCCTGCTGATGGCGGCGATGGCAGATCTGCAGGTGGCGGAAACCGATACCGTCGGACCGGTTGGAGCAATGCCAGCAAGTACAGACGGGCGGCAAAGTTCAGACGTTCGCGTTCTGACTGAATACAACTGGACCTGCGCTTTTCAGATGAGCTTTGCCGATGAGGCCAAGCACTGATTACTGGGTAAGTGCATGGCTAAAGAGCACAGTGTTGATGGTCTGAATTGCAATGGCTGAGATGGAAAATAGAGGAGGTTCGAAATGCAAACTCATTAAAAATCAGAGATCTTGTCTATCATATTGTTGGGATTGCAAGGATCTTTAAGT # Right flank : TTATACACATCTGACGCTGCCGCGGATCGCATAAGTATAGATCTCTGTGGTCGCCGTAGCATTAAAAATAATAGGTCTGG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //