Array 1 41567-42313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOD010000009.1 Providencia rettgeri strain 657m NODE_9_length_134050_cov_36.919887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41567 28 100.0 32 ............................ AATTCGAAAGTACCACCGTAAGGCATGGCATC 41627 28 100.0 32 ............................ GCAATCACTGAGCGAATCTTCTTGAGTACGTT 41687 28 100.0 32 ............................ TACTGAGCCGGACGAAGTAAAAGACGCGCCAA 41747 28 100.0 32 ............................ GAGAAGCTGCGCAACAAATCAGTGAGGTGTAT 41807 28 100.0 32 ............................ ATTTGCTCACAAAATCATAGTAATCAGACCAA 41867 28 100.0 32 ............................ GGGTCAGGCTACGACAGGTTTTTATGGTGACA 41927 28 100.0 32 ............................ AGATTTAGTGGGGATTTCAGGCTTATCTAAGT 41987 28 100.0 32 ............................ TATTTTTAAGGTGACCTTATGGATTTTGTTTC 42047 28 100.0 32 ............................ ATAAGGTTGCAAATCCCCGCAAAATGAACACG 42107 28 100.0 31 ............................ TATCACTCCGCGTGAATATGACTTGCATCCA 42166 28 100.0 32 ............................ TCAGAGGTTTGGGGTATCACATTGGACTGGGG 42226 28 100.0 32 ............................ TCTTCATTGCATCCCTGCGAGTTAAATTAATC 42286 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.2 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTAACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGAATGCCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAACTAGTACATTGTTTTTCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50951-51460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAQOD010000009.1 Providencia rettgeri strain 657m NODE_9_length_134050_cov_36.919887, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50951 28 100.0 32 ............................ GTGAATTATCCCGCTTTCAACAGCAAGAAATC 51011 28 100.0 32 ............................ CATACCCCATGTATCGCATATGGTTATGTTTA 51071 28 100.0 32 ............................ TCTCGATGTAATTGTCTTGAATGGATACCGAT 51131 28 100.0 32 ............................ GGGTAGTGATGATGTTGTTAGGCCAACTAAAG 51191 28 100.0 32 ............................ TTTATAAAAATCAGATGTATACATTCTTGATG 51251 28 100.0 32 ............................ GAGTCAGTGACCTTAAAGATTGATCCGTCGGT 51311 28 100.0 33 ............................ GATAGACTTCGCCGCATCTTCTGCGAGCTTTGC 51372 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 51432 28 89.3 0 ...T......A.........T....... | G [51458] ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAAGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAATACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGCTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTTATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATTCCTGAAAAATAGATCGGATAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //