Array 1 71380-70500 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOF02000023.1 Caballeronia catudaia isolate LMG 29318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 71379 28 96.4 33 ...............G............ TCGGGCGACAGCCAGACGAGCGCGACCGGCGCG 71318 28 96.4 33 ...........A................ ACCACGCTTTTTCGTGACGTGTACGGCTGCGAC 71257 28 100.0 33 ............................ CGTGAGTCGGTCAGGTCGCGTTGCAGGAATTGG 71196 28 100.0 33 ............................ GAAGTTCTCGCCCCTTCGGCCATCGATGCGCTG 71135 28 100.0 33 ............................ CGCTCGGTGCGTTCTTTCATGCCCTTGAACCGG 71074 28 100.0 33 ............................ CGTCTGCACGAAGCGAAACAGATTCACCTCGCG 71013 28 100.0 33 ............................ GGCATGGCGCAGAGCCCGATTCTGAACGGCAAA 70952 28 100.0 33 ............................ TTAGCTCGTGTAGGCTTCATTCTCCAACGATTG 70891 28 100.0 33 ............................ CGGGGCGCGGTTGCCGCCCATTTGCCCGTTCAA 70830 27 96.4 33 ...............-............ TGGACATGCTGGTCGGCGCGGGGCCGATGGTAG 70770 28 100.0 33 ............................ CGAGGTCGGATCGTCGACCTGTCGCACGAAGAT 70709 28 96.4 33 ..C......................... CGTCCCGTCCTCGCCCATGATCCGCACGACGCG 70648 28 92.9 33 ..C.................A....... TTCTGGTTTCGCGTATGCCCTTTGCGCTCAACC 70587 28 96.4 32 ..C......................... CGTCCTTCTGGCTGAAGTCGAAGAGACGCGTG 70527 28 96.4 0 ..C......................... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 33 GGTCTATCTCCGCGCACGCGGAGGAACC # Left flank : GGCGCGAGTTCCGCGATGCGATTCGCATCACGCGGGAGATCATGCGGCAGCCGGCGCTTGCGCGGTATCGCGGGCGTGAGCTGCATCCGTCCGATGACCTCAGCAGCGACGCCGAGCTCGATGCGTTTGTGAGGGCGAAAGCGGAGACGGCGTTTCATCCATCGTGCTCGTGCAAGATGGGATATGACGATATGGCTGTCGTGGATGGCGAAGGGCGCGTGCATGGGATGGAAGGCTTGCGCGTTGTCGATGCGTCGATCATGCCGCAGATCACGACGGGGAATCTCAATGCGCCGACGATTATGTTGGCGGAGAAGATTGCGGATCGGATTCGAGGGCGGGAGGCGTTGGAGAGGGTTAATACGCCGTATTTCGTGGCGGGTGGAAAAAAGGCGCGGGGGTTGAGGGGCGGGCTGGAGCGGGTTGGGGTTGCGGGGTGAGGGTTGGGTTTCTGGCTGGGCGGAGGCAAGTTCGGAATGTCGCGATCTGCTTCGGCCTGG # Right flank : TCTACCTCATAACCCCATGATCGAAAAGGAAGATTGCACGTTTGCATCCAATCCAAAACATCCAAATTTTCAAAGAACAAAACCACCCCGCTACCCCGCCATCGCCCGCCGCACGACATACATCCCGTCGACATCAACCAGCTCTCTCGGCGGCGTCCCCAAATGCGCGATGCCAATTCCCCCGACCGCATCCAGTTCCCGCCAGACCATCACGACACTGCCTCGCGGCTCATGCCCGTGCCAGTCGGCAAGCACCGACCACGTCCGCTCCCGCACGCCCTTGTTCATGCGCGGCGCGACATACACGCCCGCCGACACCTCGAGCATCACCGATCCCAGAAATCCACGAAACCGGTCCGCGACGTCACTCGTCACCACCACGACCAGCGCCATCGGTCTCCTCCTTCTCGTCCACACGCAGCACCTGCTTCACGCGATCGATCATCACGGCAATGACCGCCTTCTTGCGAAACACGCGCGCGGCCTCCCGCCGCACGAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTATCTCCGCGCACGCGGAGGAACC # Alternate repeat : GGCCTATCTCCGCGCACGCGGAGGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 121287-120589 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOF02000006.1 Caballeronia catudaia isolate LMG 29318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 121286 28 100.0 33 ............................ TTGCTTGGCCGCCACCCCACCCGTCTGGATGAA 121225 28 96.4 33 ...........................T CCCGTGCCGCGTCGACTCCGTCATCGGCGATGC 121164 28 96.4 33 .......A.................... TCCGGCAGGCGTCAGACTCGTGAGATTGCAAGG 121103 28 100.0 33 ............................ TGAGGGCGCGGCGAACGAGATATTCGAGAAGTA 121042 28 96.4 31 ..............G............. CGTATCGGCGGGCGAAGTGGGCCCGACGAGT 120983 28 92.9 33 ..............G.....C....... CGGATCGCGGCGTTTGAAGCACGGCGGGCGAGC G [120981] 120921 28 96.4 33 ............C............... CTTTTGGCCGTCGATGAGTTTCAATTGCGGCAG 120860 28 96.4 33 ........T................... GGTGCGCTACGAGGACGGTGTGATGCCGCAGGG 120799 28 92.9 33 ....T........C.............. CGGCATTTCAGACGCACGCCAGCGCGCCAAATC 120738 28 92.9 33 ..............T..........G.. GTATCGCGCGAGCGACTATCAGAAAAAGCTCGC 120677 28 96.4 33 ...........A................ CTCGACGCAGGTCTTTCAGGGAATGCCTCCCGT 120616 28 89.3 0 .....................C.TA... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.5 33 GTTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GTGAGTCCGCGGGAGATTGCGGATGTGATCGGCGTTGCGCCGAAATTGCCCGATGGGTCGGATGCGACGGCGCCGCGGGCTTCGGGGACGTTGAAGGCGCATTACGCGCCGAGGACGCCGCTCTTGCTGCTGCCGTTTTCGTCGATCGAGGCGATGCTTCGTCGTGATGGCGGGAGGAAGATCGCGCTGGTGGCGCGGCCGTCGAGTGCGGGGGAATGGGCGCGGGCTGCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCGTATGCGCGGGGGCTTTATGGCTTGCTGCGGGCGCTCGATCGGGCGAATGTGGAGCGGATCTTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCTGTTAATGACCGGTTGGGAAGGGCGGCGGCGGCGTTTGAGGCTGAGGAGTGATTTGCTGCGCTTTTTTTGGCGCTCAACTGTGAAGATGGATTGCAGGGATTTCGCTTTTGGATCAGATGGTTATGATTTAG # Right flank : CTCACTCGCCGGGCTTGAAAACGCCGCGCGAACACGCCCGCCTACCCCTTCATGTCTGGGCCGAGGAAACCATTCTCTCTCTGGTGACGCAAGGGCCGCTCATGCCAATTGTGTAGTAGCGCGCATGGCGTGCGCTGGCGACGGGTGGGAGAAAACTTGTAAAACAGAAAATCCGCCCAGCGCCGCCACAGTGCAGGACACCAGTTTCCCGGCGCGCCCTATCGCTACTCCGGCTCTGTATCGGGTTCCGGTATGGATGCCACCGGCAGGAACAGCGTCAGCGGTTGATCGGTAAGCGGCTCGAAACCATACTTCTTGTAGAAGCGGGCCGCGTCATCGTTGATGGCGTCAACGATGACGCACTGAACACCGATGGTTTTCGCCGTGCCGACGATCGAATCGAGCGCGTGCATCAGAAGGTATTCGCCGAGGCCCTGACCTTTATGGTTCCTGTCAACGGCGAGCCGTGCCAAGAGCACTGCGGATACATTCCGTGGAAG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 103748-103475 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOF02000020.1 Caballeronia catudaia isolate LMG 29318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103747 29 100.0 32 ............................. GCCAGCGTATTGACGAACGTCATAAGACCGCC 103686 29 100.0 32 ............................. GTGGCGCGCGCCGCACAACATGGACAGCCAGT 103625 29 100.0 33 ............................. TGCGGGCGTGATCCTCGGCGTGTATGCCGCGAG 103563 29 96.6 31 ...........................T. GCGTAGGCGGCGGGAATCTGCCCGCTCAAAC 103503 29 89.7 0 C...T.......................G | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.3 32 GGTTCCTCCGCGTGCGCGGAGATAGACCC # Left flank : GTTATTGGTCAGCGCGAGGGCCGTTCGCCCTTGTGATGTGTGGCTGTTTGTGTTTTAGTGGCGCGAATTCGAATTCGCCGGAACGTTATGACCTTGCATCGATTTGCTCTCCTTTGCGCGATGTCGTCGGGCCTCGCCGCCCTCGGCGCTTGCAGTTCGACGAGCGAGCCGGAACTGCGCGCTTCGAAGCCCGTGATTCATGTGTCGTCGGCACGGGCGGCATCGGATATATCGAGTTGTTTGCAGCGGATGATTCCTTCTGCTCAAGCAAGACGCGACCAAGGTTCGGCGGAGTTGATCGTCGGATCGAATGCGTGGCTCGTGACGCTGACGCCTTCGGTTTATGGGTCGGTGGTGAAGGTGCAGCAGTCGTCGAGTGATGATGGGGGTGTGCCGGAGCCGGAGCTCAGGTTTGATATTGCGAGGTGTACGACTTGAGGCATGTCGTCGCGGATGGGTTTGGCGATTTGGCCTTTTGGATCATGCGGTTATGATCTAGG # Right flank : ATTTGTTACTCGATTCCGAAATAGCGCGTCGGCCATTCCCCCTCCGCCCCGCCGGAGCCCGCAAAAACAAAACCCCGCAAGCCTTAACGACTTGCGGGGTTTTTAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGACTACCAGCTAGCTGGCCTTCGTCAAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCATTTTTGCAAATAGATGTCAAACAGATGTGGACACTTCGATGCGTTCCGCGCCGCGCATATAAGGCCGCAAAACGGCCGGAATCGTCACCGATCCATCGGCGTTCTGAAAATTCTCCAGCACCGCGACGAGCGTACGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCAGGCTTGCCCTGCGCATTGCGAAAGCGCGCCTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //