Array 1 1568-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRR01000119.1 Cronobacter sakazakii strain cro810A3 contig119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1567 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 1506 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 1445 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 1384 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 1323 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 1262 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 1201 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 1140 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 1079 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 1018 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 957 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 896 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 835 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 774 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 713 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 652 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 590 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 529 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 468 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 407 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 346 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 285 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 224 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 163 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 102 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 41 29 89.7 0 .C...................G.G..... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GATAACGGCCAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35272-34702 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRR01000018.1 Cronobacter sakazakii strain cro810A3 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35271 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 35210 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 35150 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 35090 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 35030 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 34970 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 34910 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 34850 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 34790 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 34730 28 85.7 0 ......................C.T.TC | T [34708] ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCGCCCGGCCCAGCCCCCTCCCTGCAAA # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6039-7898 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBRR01000144.1 Cronobacter sakazakii strain cro810A3 contig144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6039 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 6100 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 6161 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 6222 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 6283 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 6344 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 6405 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 6466 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 6527 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 6588 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 6649 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 6710 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 6771 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 6832 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 6893 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 6954 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 7015 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 7076 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 7137 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 7198 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 7259 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 7320 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 7381 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 7442 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 7503 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 7564 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 7625 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 7686 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 7748 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 7809 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 7870 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCGGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //