Array 1 12836-11281 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCQ01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 77-3451 NODE_1_length_464508_cov_4.59368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12835 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 12774 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 12713 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 12652 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 12591 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 12530 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 12469 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 12408 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 12347 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 12286 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 12225 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 12164 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 12103 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12042 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 11981 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 11920 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 11859 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 11798 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 11737 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 11676 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 11615 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 11554 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 11493 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 11432 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 11371 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 11310 29 93.1 0 A...........T................ | A [11283] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30851-29542 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCQ01000001.1 Salmonella enterica subsp. enterica serovar Cerro strain 77-3451 NODE_1_length_464508_cov_4.59368, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30850 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 30789 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 30728 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 30667 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 30606 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 30545 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 30484 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 30423 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 30362 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 30301 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 30240 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 30179 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 30118 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 30057 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 29996 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 29935 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 29874 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 29813 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 29752 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 29691 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 29630 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 29569 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //