Array 1 1212951-1210902 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1212950 33 100.0 35 ................................. TATGGCCGCCTTAATCGCGGTAAAAATAGATTCGG 1212882 33 100.0 35 ................................. CTCTCTTTAAGGTATTAAAAAGAGACCCGAATAAA 1212814 33 100.0 33 ................................. ATGTCGTTAAAGCTCTCAATATTTTGCGTAAAT 1212748 33 100.0 34 ................................. CTAGATAATCCCGACGAGGCTATCTTCTTGGCAG 1212681 33 100.0 33 ................................. TGAAGCCGTACAAGCCTTAGGCTATTCGAATGA 1212615 33 100.0 33 ................................. CTTGAAAAGGACCCTCAGATCATCGAGAGTAAT 1212549 33 100.0 35 ................................. CGTTTTGGAGGTACTTATGAGTACAAAAAGAGTTA 1212481 33 100.0 34 ................................. GACATTAGGAAATGCCGTGCAAAGAATAGAGGAA 1212414 33 100.0 35 ................................. TCAGTCGCCCGGCCAACCATGAACAACTCTCCGAC 1212346 33 100.0 33 ................................. ATCTGCTTAAACCAGTTAACAATCTCGGCATGG 1212280 33 100.0 35 ................................. TGGCTTAATGCCAAGTTCTAATCCTGCGGCTCTGT 1212212 33 100.0 35 ................................. TTGCCGCAGGACCGGTAAGCGTATGGCCCCCATCA 1212144 33 100.0 37 ................................. CTGCGAAAATTTTAGAGGTCAGCTCGAGGTTGAAGCA 1212074 33 100.0 34 ................................. CCGGAGGTGCATCATGGCTGAAAAATCCGTCCGC 1212007 33 100.0 33 ................................. CATCACTGTCACCCCTCTATCTCAGCCACAAAT 1211941 33 100.0 34 ................................. ATTTAATTTAAATGTTTCTTTATGAGCTACCCTA 1211874 33 100.0 34 ................................. AGTTGAGGTGTCGATTTCGGTTAAGCGAACTTTT 1211807 33 100.0 34 ................................. CTTAAAGGAGTTATGCGAGAAGATTTTGAGCGAA 1211740 33 100.0 33 ................................. AATCGTTCTCATAGATTTTCCTCCTGTTAAATA 1211674 33 100.0 33 ................................. GTATAAGTACCGGCTGTTGCTCCTGAGTTGGCC 1211608 33 100.0 34 ................................. CCCACAAAAGCCGAAAGCCGGGCGGCTAAACTCC 1211541 33 100.0 35 ................................. AGATTGAAGGTCGGGAATATCGCGCTGACTTCTTT 1211473 33 100.0 36 ................................. ACTTATTCGCCTACATGTGATAAATGCGCGCATCAG 1211404 33 100.0 35 ................................. TGGGCAATCGCATATATCACAAGGAAAATGATTTT 1211336 33 100.0 33 ................................. ATGCCCATAGGTCTCCCCGCCTGCTGTATGAGC 1211270 33 100.0 37 ................................. AAATCACCAACACAGGTGAGGTTAAGACAAACGGCGG 1211200 33 100.0 34 ................................. TAAGTCCCTATACAGAAGGGTATATAGACGGTAT 1211133 33 100.0 34 ................................. ATACAAAGTATAACCGAATATATGTTCGAGTACA 1211066 33 100.0 33 ................................. TTGCCGCAGCTCGTGGTAAAGCCACGATGTTAG 1211000 33 97.0 33 ...A............................. ATATTACAGGGTTTCCACATGCTCTAAAAACCT 1210934 33 93.9 0 .........................A..T.... | ========== ====== ====== ====== ================================= ===================================== ================== 31 33 99.7 34 GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Left flank : TGGATGGATATCCGGCTTTTATGTGGAAGTAGGTGAGAGAGATTTTAGTGCTGATCACATATGATGTTAATACTCAAACCGCGGCAGGAAGAAAGAGGCTGCGTCAGGTTGCTAAGCAGTGTGTGAACTATGGACAACGTGTCCAGAATTCTGTCTTTGAATGTGTGCTGGATGCGGCAAAATTCCGTGAGGTTCAGCATAAGCTGGAGCAGATTATTGATACGGAGACGGATAGTCTGAGGTTCTATATGCTGGGGAATAATTACAAGAACAAGGTTGAGCATATTGGGGCAAAACCTTCGTTTAATGTTGAGGATACGTTGATTATTTAGTGCGAACCTATAGTGCACAGCAAATCCTCGGGAGGTTCGCACCGTGAAACAAGAGGAAATTTGTTGAAATGTGTAGGTAAATAATGGGAGTGTGCTGTAGTGAGGGGAAGAAGTTTAAGGAAATGAACAAAAGTTGACTTTAGTAGATAGTTTTGATTACTTTTTGCA # Right flank : CGCCTAAGCTCTTGATCTGCGGTAAACACAAAAACAGATCTCCACTCCGCATCAAACGCACATAATCCGAACTGCTTACGACAGGTAAACCCTGTGGCGAAGAGTTCGGATTGTATTATATCTCTGAAATATGTTAGAGGATGCCAGATAAAAGGCATCCTCTAACTTTTGCATTGCGACTATTACTGTTTTTGATATTTTAAGGTTTTATAGACTGCCTGACCACATTCGGCCAAGGAACAAACTACAACAACAATAGCAGTAAAAACAACAAACAAGTTCGTTCCGCCCACTTCCATGAAGCCTAATGGGTCAAAGCTGCCCCAATCAACACTTTGCAGAAAGACTGTAAACTCCGTGCTAAACAAATCCGGCCTATTTAGTAGATAGATCATTATGCACATGTTGATTATAGTGCTTATAACAACTGCACCGCAAACGATAGGCGTCCATCTGCGGACCTTGATTTTGAAAATACATGCGCCGACAGCTAATATAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCCTCTGCGAGGCTCGAGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1226707-1224914 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1226706 33 100.0 36 ................................. TCGCCACCGACTTTTTACCGCAGAGGATGTCCGTCT 1226637 33 100.0 35 ................................. CCGTTGGTACTGCCTCTGAAAAAGAGATCGTCGAG 1226569 33 100.0 33 ................................. CTCGGTCTTGGATAACTCGATAAAGTTGACGGA 1226503 33 100.0 33 ................................. CTCACCCCCTAATGATGTCAATAGTTCTGATAC 1226437 33 100.0 33 ................................. CGCGGTCAATCCATCCACGAACCCATGCCGACG 1226371 33 100.0 36 ................................. ACCAGGGGAACAATCAATCCCCTGTGAGGGGAACAA 1226302 33 100.0 35 ................................. CTGATATTCGTGATTATTTGGTAAATATACGATAT 1226234 33 100.0 35 ................................. ACTAGATAAACCTTTTTACAAGTGCTACACCAGAC 1226166 33 100.0 36 ................................. AAAGCTACCAAGGTCAAAAACTTCAGCGACATCCAC 1226097 33 100.0 34 ................................. TGAGGTGCACTGGATCCTGAGCTACACCCAATCA 1226030 33 100.0 37 ................................. TTCTTAGTAGCCATAACCGAATCTCCCTCTATGTTAA 1225960 33 100.0 37 ................................. TTTTTGGCTTTGAGGAGCGGTCTTAGTTCATCTTTGT 1225890 33 100.0 32 ................................. GGCTTTTGTTATGACTAAAAACTAAGGAGACG 1225825 33 100.0 34 ................................. TCCAATGCATTCTCCGGGGTGAACAATCGTTTAA 1225758 33 100.0 35 ................................. TCCTATTTACCCTTTCCCATCTGAACCCACCGGCT 1225690 33 100.0 35 ................................. ATTTCTGCTTTGAATCTTAGCCATGTTAGATAAGT 1225622 33 100.0 33 ................................. CCAATAGATATGAAGTCGGAGTATACTCCAATA 1225556 33 100.0 35 ................................. TGTTGTGTATCGTTTTATCAGGTAGTCACCAAGAA 1225488 33 100.0 35 ................................. GCCATCAAGCTGTTCTCGGAGTGTCTTAACCTCTA 1225420 33 100.0 34 ................................. ATTGATATTGGCCTCCTTTATTTGACTAACTAAG 1225353 33 100.0 33 ................................. CCGTCTCCGCCAGGATATGCTGAGGGCCGAGGC 1225287 33 100.0 35 ................................. GCAAAAGCATGTCTTAGAGCAAAATACATTGTCAC 1225219 33 100.0 33 ................................. AGGTAATCGCTCTTCCGCGGGCATCCATCCATC 1225153 33 97.0 38 ................................A TCAGAGTATCGGGAAGGAGGCCATAAAAAAAGGTATTG 1225082 33 100.0 34 ................................. CTGAAAGCGGTTGGACACGATAACTTCTCTGTTT 1225015 33 100.0 36 ................................. TGCGCGTGGTCTTGCAAAGGGAAGCAGAGCTGCCAA 1224946 33 97.0 0 ............G.................... | ========== ====== ====== ====== ================================= ====================================== ================== 27 33 99.8 35 GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Left flank : ATCCTTTGCAAACCAACTCGAAGAAATGCGCCTTTGGTCATTTTTATCACTCCATGGATGTTTCCGGAACGGTTTTGGAAGACGCCTGGCGGGCCATCGATCAGGTCCATGACGAATTTCATACCAGCGGCAGTAAGGTCATCGAGGCCGTCAAAGAAAATAAACCGGAATTGGCCAGGAATCTATTTTTACATACGAAGGAACTTTCCCAGAATATCTTTGCTAAATTGGACGAAGTCACCCATATCATAGAAGGCAGCGCCGCTCAAGGAGTGGAGATCCTGAGAACCAGTAAGGCGAGCTGAATACAATCCTCTTGCCGCTCATCCGGTGCGAACCTGTAGTGAACATGAAAATGATGGGGGGTTCGCACCGCGAAATATGAGGGAAATTGTTGTAATATGGAGATTGTAGTAGGTCTGGCTTTGGTTGTTGGGTAGAATAGTTTTGAAAAGTAAACAAAAATGAACCTGTTGGGTGATTTTTGTTTACTTTTTGCT # Right flank : AAATAGGAGGGACTATTTCAACTGGTCCCTTGATTTCTAATACAAAGCCGGCCTGGGATCCCCAGGTCGGCTTTGTATTACATAGCTATTTTTGATTCCAATATTTCTATTCTTCTACGAAGCTCATTTATTTCAGTCTTATCGTCTCTCAGTTCCTTAACTGCTTGCCAAGTCATCTCCTGCTTAGCGGAGATTTCATCCAACTTATCAAGTTTTTTATATGTTTCTCGATTGTCAGCCTTCAATGCTTTGATATCGGATTCAATCCGGTCAAGAATATTCAGCCTTTCAAGGATAATATCCAACTTGTCCATTGCTTATCCCTCCTGAGTTTTATAGTACCACAGTGATATTTGTAATACAATGCTTGGAGCTGCCGTTGGCTGAATGAATTAAGAGGGTCATTTAAGCTACGTTGCTCCCTGTGAGAGAGCGTGAATTACTCAAGAAATAGATTTCTATTGAGATTTTGAGAGTTTTCTGATAAATTATAGTTAATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTCGTATGAGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 3 4915691-4916320 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4915691 30 100.0 37 .............................. CTCAGTCTCGTACGGCTCCCCTGTGATGGTCTCAAAC 4915758 30 100.0 36 .............................. GAAACTTAGGTCAAGCTTCTCAGGTGACCGGGTTTA 4915824 30 100.0 37 .............................. TAGAGCAGAGAACACAGTTTCCGCGTAAAGTATGCTA 4915891 30 100.0 37 .............................. GGAAAACAATCACCGGTTACCGGGAGCAGTATTTTGT 4915958 30 100.0 37 .............................. CCCTGCTGCTGGAGATGGGCTTAGGTTAGCAAAACGG 4916025 30 100.0 35 .............................. TTAGATGTTTTGAACATAGCAAAAATTAAATACGA 4916090 30 100.0 33 .............................. ATATGTATACCTAATTCATCTGCTATTACTCGG 4916153 30 90.0 38 A........C...........A........ GTTATTATCTCGCTAAGATAGGATTGCTTAATCCCCGT G,A [4916155,4916158] 4916223 30 93.3 38 ........A........A............ TCGGATGTTGGAGAGTATTCCCCACCCAAAGGGAAAAC 4916291 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.3 37 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : GGCCGAAAGAGCTGCTTCAATTGGCCGTCGATGGAGGAATAGGAAGTAAGAACAGCCAGGGATTCGGGTGTGTGGAGATTATCAATGGATAGTAAACATCGCCGTTGGGTCTGTCCGAAATAGGTACGCGCGTACCTATTTCGGACAGACCTTTTCATGGTAAAGTGATACTGGAGTTTGGTATTAAAGCGGTTACCTTTTTCAACAATCCCGGAATTTTGATTTTAATTTAATCTCTTCTTATGCTAATATTAGCATGAGAGATAGGGCTGATTTCGTTTTAGACAAACTAGCCGGTTTATTACTTCTACCACTAGATTAGGGGGAGGATAAAAGGCTAAGTTTTAATCGTAGCTCTTGTCGTCGATGTGCAGTGAGGTAAAAATGCCCGGGGATCGACGACAAAGAATATGGCTAAATAAGCGGGCTAAGAAGAGAAGTGCTGATTTGGTTAACTTTGGTCAATGGCTGTAATGGCTTATTTAATGCTGGTGAAATGG # Right flank : CCATGGATTCCAAGCCATTCTGAATAGTTGTAATACCGTGATTAACTTACCTATAAGTGACCTTTTCTCGATAAAACGGACACTCCAGAGTTAGCGATTCTCTCAGAATCGCAAGATTGCTTCTTTTTTCATCTTAGGTAAATACTCCAAGCTGCTCTCTCAGGGGTCAGCCCCTGAAACCCCGCCCCCGCCGGGTGGCAGAAGAACGGTCTTTAAACTGTTCTGAGGCATAAGTCTTGGCCATGTTAGCCAATCAAGGGCAAGGACTTCGTCTCGGCTGACGCCGCCCCTTGACAAGCATCTACCGAGTTGATAATCAGCATCACAGATAAATTTTTCAATGGTGTCAGGTGTGGCAACATTGCCGGGAAATTCTATATTAAGGGATTAAATATGGAGAATAAAAGCAGGCTATGATATACTGTTTCCATACAATGGATATTGAGGTCGATAGTGATAGTTTCATAACGGAGGATGATCACGATGTCAATGGACGTGGC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 4921518-4923130 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4921518 30 100.0 36 .............................. TCGGTGAGCTTAGTGTAAATGACCCCGCCATTGGTG 4921584 30 100.0 38 .............................. TCTACCAAAAGGTACTAAGTGGCACCCTGAAGGGCGTC 4921652 30 100.0 35 .............................. AAGATTCATCTAAGAGTATGAGTAACTTTGGGGCA 4921717 30 100.0 36 .............................. AAACTCAAGGTTGAGCAGGACGAAGAATTTCTCTTT 4921783 30 100.0 35 .............................. CGCGGATAATAGCGAATGGGCGATCCCTGTCAAAG 4921848 30 100.0 36 .............................. AGTCGCTCCGTCAAGCCTCAGGCTTGGAAGGATTCC 4921914 30 100.0 37 .............................. TCAATTCTGCCGATGACCTTATCTCTTGTATGGTTGA 4921981 30 100.0 36 .............................. TCGGTATCTGGGCAGGAGTTGATGAATGACGCAAAT 4922047 30 100.0 35 .............................. TAGATTGTGTGGGCCTGAGCAGGATAACGGCCTCC 4922112 30 100.0 36 .............................. GCCAGGATCCGACCGGTGCCAACGCAGAGGCGTACG 4922178 30 100.0 35 .............................. ATTTCATCGACCGGCGCGTCCTCGATACTCTCTTC 4922243 30 100.0 36 .............................. CCCTCAAGGCTCCACTCGCGGTCCTCATCGGGTAGC 4922309 30 100.0 37 .............................. CTGTCAAGTTTTTTCATCTCATTAAGATAATCTTGAA 4922376 30 100.0 39 .............................. AGGGACTATAAGGACTTTTATAACGTGGCGCGGTCCATG 4922445 30 100.0 35 .............................. CTGATTCGCATACTCTCCTTGGGTCTTTGCAAAGT 4922510 30 100.0 36 .............................. CAAAATCGCCCGTATGAATCGCAAAGCCAAAAAACA 4922576 30 100.0 37 .............................. ATGGTATGGAGTAAGCTTTTTCCGCGGCTCTTAATTC 4922643 30 100.0 34 .............................. TTAACCCATGATTTGACTTACTTGCTCTGAATCT 4922707 30 100.0 37 .............................. GCTTGTAATACAATTGCTCCGGAGCGATGCCAGGCCG 4922774 30 96.7 35 .....................A........ CGTCTAATAGATTAAGTTTTCGAACAAGACGCTGC 4922839 30 93.3 34 ............................CA TATGTATACCTAATTCATCTGCTATTACTCGGAT 4922903 30 86.7 35 ..GA.....C.......A............ CGCAATGGTGGAGAGTGTACTAATTGCGAGGTTTA 4922968 30 96.7 37 .................A............ CAAAAACCTTGCGCTTCCATGCTGCCCAGGAGGTAAA 4923035 30 90.0 36 ........T........A...A........ CTAAAAAGGACACAGAATCTTTGGAGGCTGAATACA 4923101 30 90.0 0 .................A...A.......T | ========== ====== ====== ====== ============================== ======================================= ================== 25 30 98.1 36 GTTGTTAGCTTACCTATGAGGGATTGAAAC # Left flank : TGACTAAGCCGATACTCTATAGGGTCTACCCGGAAGTATCCTATCCGGTGGCGGAGGGAAAGGAAATTGAGATGAGGACAGTTGTACCTACGGCTCTTATCCGGGAGATCGTTCTCAAGGCGGATCGCTATTATTGCCGGGCAGGTGGGTATTTGTATGAGTATAAAGGGCAGCGGACCTTTGAGAAATCAGTGGATTTCCTTTATGAGAAAGACGGGAAGCCTATTGCGTTTATCCCTAAAAGTGATGGCCTGGATTCGCCTTTGGATCTCAGAGTGGCGCAGTTCGGAGAGGACTTGGTATGTCTTGTTTAATGGCCTTGGCTTAATGGGCGGAGATTATTTTGCTATATGAAATTGTCGTCGGTGTGTAGTAAGGTAAAAATGCCTGGAGACCGACGACAAGGACTATGGCTTAACAAGCAGCTTGTGGGGGAAAACGCGGATTCTCTGGGCTGAACTTGTTAAGCCATAAATGCTGATTGTATGCGGGTAAAATGG # Right flank : TATGAACTTGGTAGGGCTTTGTTTGATGTTCGTTATCTTGAAAAAAGTTTTAAGACCCTTGATAATTCCCTTAAGGCCTGTGAGCAGAGTTTAAAGAATATATGTAATACATTTCGCTGGCTGCAGCTCCTGGCATTGTATTACATATATCCTTGTGGTAACATAAAAATTAGGAGGGATAAGGCATGGATGATAAATTAGATTTGATTTTAGACAGATTAACGGCAATGGATAGGGGCTTAAAAGCTGAGATAGGTTCTTTAAAATCTGAGATAGGTTCTTTAAAATCTGAAACTCAGGCGATTAGTGAAAAAGTGGATATGACATGGAGAGCTATTCAGGAATTGAGGGATGATAAAACCGAGTTGAATGAACTTCGCAAGAGAATAGAAATTTTGGAATCAAAATTAGCAATGTAATACATACCCAGCTGGCAGCTCCGCGGCTGGCTTTTCTTTTTGTATTACAAATTCCTGCTGGGGCCAGGGGGGATTCCCCCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTAGCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 5 4929047-4930076 **** Predicted by CRISPRDetect 2.4 *** >NZ_VLKD01000001.1 Desulfitobacterium sp. LBE DesLBEDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4929047 30 100.0 37 .............................. CTATCATTGATACAATAAAAAACTCCATTGGACTTTA 4929114 30 100.0 35 .............................. TCTATTTTTGGTTTCACCTCACTTAAAAATAGCCT 4929179 30 100.0 37 .............................. CCACAAAACATACTGCTCTGCGGATCCGCCGGCAGCC 4929246 30 100.0 37 .............................. AGGGCTGCATCAACATCCGGAATATGGCTCCACCCGG 4929313 30 100.0 36 .............................. CTCGAATGGCCCAGGCATGAGGATGATAAGCCCCAG 4929379 30 100.0 36 .............................. CCGCCAAACTTCGCGAGGAGCGCGGAGCCGATAAAA 4929445 30 100.0 38 .............................. ACCCATGTCGCCGCTGTGGCTGTGGGGGCTATGGAGTG 4929513 30 100.0 36 .............................. ACCAAGGATCCTGAACTCCGCTACGGCCAAAGCGGA 4929579 30 100.0 38 .............................. TTTCTTCGCCGTCCTCTATCATTATCTCAGCTTCTTGA 4929647 30 96.7 37 ...G.......................... ATTAACTACGTCCCAGATTCCCTCCCGAAACGCTTCC 4929714 30 96.7 35 ...G.......................... TTAATAAGGAAAACCTGCCAAAGCTAATAACGGCC 4929779 30 96.7 36 ...G.......................... ACGTCGCTCACAGCCGGATACGTTCCCGTTCTATTT 4929845 30 93.3 39 ...G.................T........ ACTGATAATCGTTAGATTTGGCATAGTATCACCTCGCTT 4929914 30 96.7 36 ...G.......................... TTAAAATAACTTGTGCTTGTTCCGCTGTAGCTCCAT 4929980 30 96.7 37 ...G.......................... AAGCCATCCAAGGTAGAGCCATTTATAAATGCGGCTT 4930047 30 93.3 0 ...G.............G............ | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.1 37 GTTATTAGCTTACCTATAAGGGATTGAAAC # Left flank : AGCACACTATCGAAAAGAGGGTATGCAGCGGTTTTTGAAAGGGCTAGATAATAAATTTGGGGGAGAGAAAATTGGGAAGATGAGGTATAATTATGTTTGTGATCTTAGTCTATGATATGGGGGAAAAGCGGGTAGCCAAAGCACTGAAACGGTGCAGAAAGTACCTGAACTGGGTGCAGAATTCTGTCTTTGAGGGAGAGATTTCGGAAAGCAATCTGGCAAAGCTGAAGATGGAACTGGACAGGATTATAGTGCCTGAAGAAGATTCGGTTATTATTTATACACTGAGGACGACCCGCTATTCTGAGCGGGAGATCATGGGTTTGCGAAAAGGAGGCCAGAATTTAATCATATGAAATTGTCGTCGATGTACAGTAAGGTAAAAATTCCTGGAGATCGACGACAAGGAATGTAGCTTAGTAAGCGGTCTGCAGAGAATAATGAAATTTTTGAGACGGCTCAAGGGAGCTGTAGCTGTTGATTTTATGCGGGTAAAATGG # Right flank : CTGCCGATTGAGGATTTCCAGGAGCCTTTCACCGCGGGTGTTTAATCTACCTTAATTTGGTTTACTGGCGGGCCATGAAACGGGCTGCTGACAACGCAACAGGCTGTATGCTCCCATAAGAGGGAGTATACAGCCTGTCTGTTGTGGGGGATGGGTGACAAATTGGAACGGGGGCACCCCAAAGGAGGCCAGCACTGCGCCGGTCAGCGCTTCTCTCAGAGTATAGGTGAGAGCTATGCCCGCCAGAATCCCTGTAAGGAGAACGAGCAGAAAGCGAGCGAAGAGCTGGACGATGATGTCGCGGCTTGTAAATCATAATGCCTTCATAACGGCGATGGCAGGCCGATCCTTGGCAATCAGCAGCTTCATCAGCAGCAGTGTAACCCATAGGGTCATGAACAGCGCCCCAAGAAATCCCCTGGCAGAGACGCTTCCGACGGAACGGAGAGTGGCCGAAGGTCTGGGCGACATAACCGTCGATATCGGCAATCTTGGCAAAG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : GTTGTTAGCTTACCTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //