Array 1 69329-71080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000002.1 Streptococcus oralis strain E684 NODE_2_length_282485_cov_73.669728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69329 36 100.0 30 .................................... AACTTATCATTATCTATAACTCGGTCGCGC 69395 36 100.0 30 .................................... GTATTGATGGCAGTAGTAGCAAATGAGGCT 69461 36 100.0 30 .................................... ATCGAAAGTTTTTGGCAATAGACAATTTAT 69527 36 100.0 30 .................................... GCGCTGGCTCTATCATTTCGCAAATCAACG 69593 36 100.0 30 .................................... CCAACAGTTGCACCGTCAGCTTTACTATAC 69659 36 100.0 30 .................................... TCAATTAAATATTTGCCTATTAACTCTTTA 69725 36 100.0 30 .................................... ATTGTTGAAGCAAGTAACAAGATGTTGGCA 69791 36 100.0 30 .................................... TAATGTACTAGATGAAGTTGAAGTGTTTGT 69857 36 100.0 30 .................................... GAACTGAACATGATGTCACCACAATACATT 69923 36 100.0 30 .................................... CTGTTCTAGGTAGCGTTAAATATGAAACGG 69989 36 100.0 30 .................................... AAAAGAGTGCGGTTATACTCTTATTGTTAT 70055 36 100.0 30 .................................... AGGGGAAATTACAACTAAGAAAACACCAAA 70121 36 100.0 30 .................................... AAATAAATTAAAAGATTTTATATAACTCGT 70187 36 100.0 30 .................................... ATCGCAGTCAAAGCAGTCAAAGACTACCTA 70253 36 100.0 30 .................................... TCGACAAAGACTTCGTTAAAAATGAGTATG 70319 36 100.0 30 .................................... TTTCTCAAAGTTATCGCGGTTCTCGTACAA 70385 36 100.0 30 .................................... AAGGTTCTGTTTACAGTTTTATCATTCCTG 70451 36 100.0 30 .................................... TTCTGCAAATGTTTCATCAATATGATTTAC 70517 36 100.0 30 .................................... AGCATTGACTTATTGACTACACCTTCGACA 70583 36 100.0 30 .................................... TCATCCATGATATGTTCACAATTTGGATGC 70649 36 100.0 30 .................................... CCTGTGCTTTTTGTTTTGCCAAAAAGTATA 70715 36 100.0 30 .................................... AAAATTCCTCGAAGGGTTCAAAGCTATTAT 70781 36 100.0 30 .................................... ACCGAGGTTACACCCTCCAAGCATTTCCGA 70847 36 100.0 30 .................................... TATGAAAAGAGAGGTCTCTATGATTTGGAA 70913 36 100.0 30 .................................... TTTTTTAGATGTTTGTCTAAAATGAAAGCA 70979 36 100.0 30 .................................... ATAAATCGGGCGTGCACATTTATGGTACAT 71045 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGTGAGAAAATGGAGTTTCTTACTAATCATAGTAACTTACTCTATATAGTCTCATTTCCTTCAAATGAGGGTTATCTTCATGTAACTAAAGAAGTACTAGAGGAAATCAATATCGTTTCCGATTATGTAGATCATTTTTATTCCTTAGAATTTATGTATGAACGATTTATTAATCAATATCCAATAAATCAAATACCTGATGAACAAGACTTTTTAACTTCTTTAAGAAAGGTTGGCCCCTATTTATTTAGTTCTGATATTCTTCATATGAGTTTATCTATAGAAGATCAAGTAGCATTAAAGATTTTAAACAAATTGTATCAGTATGAAATGAAAACAAAATTCCGTATTGAAGCGGTCAATCCAATGTTATTGAAATATTTGAAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CAGGCTAAATTGGATCCAGGATTAGCAATTGGAGCGAAAACGCTCTCTCTTATTTCTTACAGATTAGCTCCCCAGTATGATATAATGTCATTTAGAAGAAACCAGAGAATATAGGAGTCGAAACGATGCTAGCTATTTGTATCGATTCTATATGTGACAAGACAGGAACCTATAAGTTGTTAAGAAATTATTCATCCTTACCTTTCTCTTTAATCCAATCCAGAATAAAAGATCATGTCACGGTAATAGAAGTAGATATGTTAGATTTGGACGAATTGAAAAAGGTTAGAGCCCTCATCCATGAGTTGAGTGCCATTGGAACTAAGGTTACGATGAGAGATTCGACTGGTATTATCACCTTAGAATTTTTAAATAATATTATTTCTACCTTCGAAGAGATTGCGGCTGAAAGAGAAGAATTAGATGCTCTGATGTTTGAGGAGGAAGAGTGATTGTCACCTTTTCCAGTGAATCATACATTCCCAAGATAATTTTTAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50-207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000038.1 Streptococcus oralis strain E684 NODE_44_length_207_cov_1.030303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50 36 100.0 30 .................................... CAAATGAAGCCATAGGCATGTTTGCGTTGT 116 36 97.2 30 .....................C.............. AATTTCTGTGTTTGTATAGCTGACTACCTC 182 26 72.2 0 ..........................---------- | Deletion [208] ========== ====== ====== ====== ==================================== ============================== ================== 3 36 89.8 30 GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Left flank : TTTCCAATGGTTCCAAAACAATTTCTGTGTTTGTATAGCTGACTACCTCG # Right flank : | # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41-197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000039.1 Streptococcus oralis strain E684 NODE_45_length_207_cov_0.757576, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41 36 94.4 30 .........................G.A........ ACGCCTCCAAGTTTCTCTTAATTGTTCTTT 107 36 100.0 30 .................................... TCGACTCATGAAAAAAGTTAAGATTGATAA 173 25 69.4 0 .........................----------- | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 87.9 30 GTTTTAGAGCTGTGTTGTTTCTAATTGTTCCAAAAC # Left flank : GTTCCAAAACTCGACTCATGAAAAAAGTTAAGATTGATAAG # Right flank : GGATCCAAAA # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATTGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 203246-201992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000003.1 Streptococcus oralis strain E684 NODE_3_length_203293_cov_71.417217, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 203245 28 92.9 33 A...........C............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 203184 28 92.9 33 A...........C............... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 203123 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 203062 28 92.9 33 ............C.......A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 203001 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 202940 28 89.3 33 A...........C........A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 202879 28 92.9 37 ............C........A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 202814 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 202753 28 96.4 33 ............G............... TGGTATCGGACAAAAATGATTGCTGGCCGTAGC 202692 28 96.4 33 ............G............... CATTCAAGATGGTGTGAATACATTCGTTTACAT 202631 28 92.9 33 ............C.T............. CGGTGCAGTCAGCATCCTTGTTATTTTGGCAGG 202570 28 96.4 33 ..............T............. TGGTTTATCGAGCATAAAAATGAACCAAACGCA 202509 28 100.0 33 ............................ CTATTCAGCGAATAAAGACGATAGCATTTTATT 202448 28 96.4 33 .......................T.... CGAGATAACTTGTCATCTCAGCTTCAAGTTCTC 202387 28 100.0 33 ............................ TGGTCAAGACTGGGCGCATAAGTCAGGGTATGA 202326 28 100.0 33 ............................ TAGACGTGTAGTTGATGAATTGAAGAATGAGTT 202265 28 96.4 33 ............C............... TACATCCACCCCAGTTTTAACAAGTCCACCAAC 202204 28 92.9 33 ............G..........A.... TAGCTTGACCGTGTACTCATTTTTCAAAATCGG 202143 28 92.9 33 ............C.......A....... CGAAGATAAGACTATTTCTGTTACTGACAAGGA 202082 28 89.3 33 ...........GC.T............. TAGGATATTGATACAGCCTAGTAGCTAACACAA 202021 28 85.7 0 ............G............CTA | TA [201995] ========== ====== ====== ====== ============================ ===================================== ================== 21 28 93.7 33 GTTTTTCCCGCATACGCGGGGGTGATCC # Left flank : ACGCGGGGGTGATCCCGTGACTTTCCGTTTGGTGACTGATTATAGCC # Right flank : CATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTGTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAACTCAGATTATCGTTTCTATCGGGCTGGCACAAAACTTTGCGGGTCTGAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGCCACATGAAATTGCAGGTCAAATCTCTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCTCCTCGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 115326-112186 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000008.1 Streptococcus oralis strain E684 NODE_8_length_138105_cov_81.786858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 115325 36 100.0 30 .................................... AAACGGTAAGGAACTTGACTGAGTGGTTTT 115259 36 100.0 30 .................................... CATGGCTCAACGAACATTATTTTCGCGCCC 115193 36 100.0 30 .................................... TTACAACTGTTATCGAATATAAAGGTCGAT 115127 36 100.0 30 .................................... CTCAAAGACAAGAAGGTGCTTATATTCAAA 115061 36 100.0 30 .................................... ATTGCTGTTTCGCGTTCATGTTGTAGTCGT 114995 36 100.0 30 .................................... TCGGTCAAGCTAGGATTGTCATCCATTGTG 114929 36 100.0 30 .................................... TGAAATTAGTGAGGTAGGATAAAATGGAAA 114863 36 100.0 30 .................................... ATCCAGACAGGATTTGAGGTTGACTTTCCG 114797 36 100.0 30 .................................... TGGGTAACCGAGTCAATGACAAGGAGCAAG 114731 36 100.0 31 .................................... CAGAATTTTTGTTTTTACTTACGGACGTCTA 114664 36 100.0 30 .................................... CTGGAAATAAAATGACTGATGTTTATTGGA 114598 36 100.0 30 .................................... TCCAAATCCGTTAGCCATTGCGTAGGCATC 114532 36 100.0 30 .................................... TAAACTCGGTCATGTGCCTGAGGGTGTTCC 114466 36 100.0 30 .................................... TATTGCTTCTGCTCAACCTTACGAGACAAC 114400 36 100.0 30 .................................... TCTGGTCTCTACTCTCTTATCTTATCCAGC 114334 36 100.0 30 .................................... TAAACTCGGTCATGTGCCTGAGGGTGTTCC 114268 36 100.0 30 .................................... TATTGCTTCTGCTCAACCTTACGAGACAAC 114202 36 100.0 30 .................................... TCTGGTCTCTACTCTCTTATCTTATCCAGC 114136 36 100.0 30 .................................... TGCTCCAAATGTGATATGTAGCATATGCAC 114070 36 100.0 30 .................................... TAAAAGCCTTTCAGCTGTTCTGGTGTCATG 114004 36 100.0 30 .................................... GGATTTTATTTCAGAGGGGACAGCCCGATG 113938 36 100.0 30 .................................... ATTTCTTATACACGATTTCCCCACACTCAG 113872 36 100.0 30 .................................... AGACTCATCTGATACTGCTGTGATGTCATG 113806 36 100.0 30 .................................... CATGATAGCCTGTTATCCTGTACTCGTTGT 113740 36 100.0 30 .................................... GAAACTGTCGCTTCGAAATATGGTTGTTGT 113674 36 100.0 30 .................................... CATCCTTGTCAAACCAATACCATTTACCAT 113608 36 100.0 30 .................................... GTATGTCAACAATAAACACAAAGAAATTTA 113542 36 100.0 30 .................................... ATCTCATTAATTCCAATAGTGAGATGGGCA 113476 36 100.0 30 .................................... AATTTCTGTGTTTGTATAGCGGACTACCTC 113410 36 100.0 30 .................................... CAAATGTAGCCATAGGCATGTTTGCGTTGT 113344 36 100.0 30 .................................... CACTACAAAGAGCAGGGTAAGAACTAATTG 113278 36 100.0 30 .................................... TTGATTTTGTAAATCTTCGATTTCTTTTTC 113212 36 100.0 30 .................................... ATCCGTTTCGTATAACTCTTGTAAGATAGC 113146 36 100.0 30 .................................... TCGTATTGTTTGGAGGATAAATAGGTAGTT 113080 36 100.0 30 .................................... TAGGTTCTGACTTAACCACCCACTTAAACT 113014 36 100.0 30 .................................... ATCATCTTTACGTCGATTTCTTTTTGCATG 112948 36 100.0 30 .................................... TCGACTCATGAAAAAAGTTAAGATTGATAA 112882 36 100.0 30 .................................... ACGCCTCCAAGTTTCTCTTAATTGTTCTTT 112816 36 100.0 30 .................................... ACGGTGTCGGACTTAGGGGTTCCACTCTTT 112750 36 100.0 31 .................................... TTAATTTTTTTAGATATTACTTTCACATAAT 112683 36 100.0 30 .................................... AGCCCAATCCAGTAGGTATTGACAGTTTAT 112617 36 100.0 30 .................................... AGGCAAGGAAGTGAACGAGATATCTTGCGT 112551 36 100.0 30 .................................... TTCATTTAGATCTAAAATAAGAGTACCAAG 112485 36 100.0 30 .................................... AACGTTCAATACTTTCAGAACCTTGCGCCC 112419 36 100.0 30 .................................... CAAATGTTGCGCGTGGCATGTTAGCGTTGT 112353 36 100.0 30 .................................... CTTATGGGAAATTTCTCCGTTACCTTGTAG 112287 36 97.2 30 .....................G.............. TAGAATACTTGAGCTTATTTTGTGAAAAAT 112221 36 94.4 0 .....................G.............A | ========== ====== ====== ====== ==================================== =============================== ================== 48 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGTTGGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGTTTGGAAAACGAGTTAGACCTAGAGTATGATGAAATCACCATTCTAGAGTTAATCGATGCACTTGGTGTCAAAGTCGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAGATTGTCCAGGTTTTTAAATATCTTTCTAAAAAGAAACTCCTTGTTTTCATCAATGCATCAGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTAAATCAACTAAGGGTTTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTAACGAGCTGAAGTCAGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATCTTTCTACGAG # Right flank : AAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTGGTGCTATACATTCTTTTTTCCCATTTGACTGGAAAAATGACTGCTAGAAAGGCACCTCCTACTGAACCACCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTATAGGGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCAGATAATAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCTAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMJX010000007.1 Streptococcus oralis strain E684 NODE_7_length_144868_cov_81.898676, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149 28 100.0 33 ............................ CCAAATCTTTTTCAGCGACGTATTCTGTACCAC 88 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 27 27 92.9 0 A..........................- | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 34 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : C # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //