Array 1 8740-8968 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000017.1 Clostridium tetani strain 132CV contig_0018, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8740 30 100.0 37 .............................. TTTTATAGAGCATTTTAATTTGCCTGAATTAGATAGC 8807 30 100.0 35 .............................. TTTGTTTCTTTGGTAAAATACTTATCACATTTAGC 8872 30 100.0 37 .............................. CTTTGTCCCCTTAGTGGGCACAAGGTGGGTACACCTC 8939 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTATTAGTAGCACCATATTGGAATGTAAAT # Left flank : AAGAATATGAACCATTTAAAATATGGTGGTAGGAGAGGTTTAAATGTATGTTATATTAGTTTATGATATAAAAAGTGATGATGAGGGGCAGAGAGTTTTAAATAGAACTTTTAAAGTATGTAAAAAATATTTATCACATATTCAAAACTCAGTATTTGAAGGGGAATTAGCAGAGTCACAAATAATTAAACTAAAATATGAATTAGATGATATAATAAGGAAAGATAAAGATTCTGTAATATTATTCAAAAGTAGAAATAAAAGATGGTTAACTAAAGATATGTGGGGTAAAAAAGAAGATAGAACCAGTAACTTTATTTGATTGTCTACCTAAGATGATGTTAAAATATAAGGGAGTAGACAATTATAGTTATATTAATGGTTTATAAATTATTTAACATAACTTGTATTATAATAATAGACTATAAGAAATCCCAACTTAGTAGGTAGACAGAAATAGAAGTTATACTATAGACATATAGTGCATCATAGATGAACGT # Right flank : TATAACTGTAGATTTTAGATAAAATAGGTATAAATTGTATCAGTAACACTATTCGTAACAATCAAAACAACTATATATATTAGTTGGATACTGATACCCTAAGAAATAGTAAGCACTTTATTTTTTAATGTTAAATGAAAATGGGTATAATGTTAGATTCTATGAAGTTTATGAGTATTTTAGTAATATTACTATTTCAAATGTTATTAAAACCTTTTTACAATGTTTTGTATATCTTATGTTTATTATGTATAATTTAACCGAGGTTATTTAAATAAAGAAGAAATAGATATGAAGAAAAGTTTATTTTATAACATAACATGGATGGAATATTATCCATGATAAAATCATTAGTAATTACACATTTTTAATCTATATAATTATAAAACCAACATTGGATAGAACTTTATCCAATGTTGGCTTTTCAATAAAATATAAGACTTTCTGATACAGGTAAGAAAATCCTCCATAATTCCTAACTTTTAGTTATTCATTGATTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGCACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 9787-9303 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000037.1 Clostridium tetani strain 132CV contig_0038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9786 30 100.0 34 .............................. TGTGGGGAGGTGATATCGTGAAAGATAGAATCCG 9722 30 100.0 34 .............................. TATAATCCTAAAATATCACCTTTGTATTTAAAGT 9658 30 100.0 35 .............................. AAGAGGTATATAATCTAAATAATGGATACCTCAAA 9593 30 100.0 35 .............................. TATGATAATGTGATATAATATAGGAAAGGTTGAGG 9528 30 100.0 35 .............................. TCTTTTTTAGATATTGCATTTTCCCATGTGCCGCT 9463 30 100.0 34 .............................. CATAAATACCCTAATAAATCGCCATACCTCTCCA 9399 30 100.0 37 .............................. AGGATTATTGGCAATACTAGTTATAATAGGAGATATC 9332 29 86.7 0 ...A............T.-..........A | T [9317] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.3 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : AAATGTATATACTAGAACTTAAAATATGGAGAGGGGAAGAATATCACAAAAAAGGACTAAAACAGCTTGGAGAATACTTAAATCAGTACGGATTAGAAGAAGGTTATCTTTTAATATTTGATTTTAGAAAAGCTACAAATTTAATAGGTAAAACTGAAGAAACCCATGTAAATGCAGAAGATAATATTAAAAAGATAATAGAGGTTTATTGCTGAGATTAGTTATATAAAAAAGAAATAGAATAATAAACTAAAAGCTCTCACATGATGGGAGCTTTTAGTTTTTTAACTTATAGTGTTATGTGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGGAAGTATAGCTTAGAGTGTTGATTTATAAGAGCTTACATACTATTTTTAAATGTAATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : ATAGTTTAAATTGTAATAGTATACTTAACCATAACATGAGATGTTTAATAAAATAATATTATGGAAAAGAGATTTATATTTTAGATCTAATTATTAAATTCAATAGTATAAATTGTAATACTCTTAGAAATAATATATGTATAATCACAATAAAATAAATATAAAAAATAATGTTAATGTACTATTATGGAAACAAAAGGATGGATAAAAATGAAGAAAAAATTAAGATTCTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGAAAGGATAGAAATTGATGATATCATTTATATAATTGAATTAGTTTCAGTTATTACATTAATTTTAAAAATCTTTCAATTCATAAATTAAAAGATATATTTTTTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAATATAAAATATTATGGTAAAATATATATTATAATGAAGATATAAGGAGGTGAAAAAGTGAAAATATATGAATTAACATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 341-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000039.1 Clostridium tetani strain 132CV contig_0040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 340 30 100.0 35 .............................. TATCCTTTACTTTTTAATTCTTTTAATAAATTCTC 275 30 100.0 36 .............................. ATAACATAGTTTATAAATTCTTTGGCTTCATTACAT 209 30 100.0 36 .............................. CTATAAATTATGGGAATTAGAAGTTCCAGGAGTTGG 143 30 100.0 35 .............................. TATGGTCTTAATAATGTATGTTTTTATATGGTCTA 78 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : TTTAAATGTTAATTACAAATACAAATGATACAGTAATTTA # Right flank : TTTTATATGTTCGACACAATCACGTTCCCAATTTAGTTGGACAATAACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 263-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000062.1 Clostridium tetani strain 132CV contig_0063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 262 30 100.0 33 .............................. GTTTTGCCTCCTAAAATAAAAGAGTTTGGGGAA 199 30 100.0 34 .............................. TTGAATACTGCTTTAGCTTGTTTACTAACTGGAG 135 30 100.0 34 .............................. CTGCCATTGGGGAAGTGAACAATCCCGTCATTCG 71 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================== ================== 4 30 100.0 34 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATGTGCGTGAGGGCTAGAATTATACGCTC # Right flank : TCTATACTTCTTTATTTCTCCTTCATAATCTCTGTTGTTGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 398-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000041.1 Clostridium tetani strain 132CV contig_0042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 397 30 100.0 34 .............................. CTAACTATACTACATGCTCTATAAGATTGGAGAA 333 30 100.0 35 .............................. AAGTCTATTACTTCTTTCCCCTTTTTTAGGGCTTC 268 30 100.0 34 .............................. ATAACATGATCCTTTGTTGTTCTCGTACCATTCG 204 30 100.0 35 .............................. TATATCTTTTTAGCCATTACTGTTCCCCCTCTATA 139 30 100.0 36 .............................. ATGGCTCAATGGGTGTGTTTTTTTGAAAAAGTTGAA 73 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 100.0 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCTTTTGATAATTTAAAAGAGCCAATGGAAGTTGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACACCTATGGAAAATGATAAAGTAAAGGTGAACTTTACTGAAAAGCAAAGAGCCATAACTAAAGGGCAATCTGTAGTTTTTTATAAAGGTGATTTATTAATAGGCGGAGGAATAATTGAATAAAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAATTGATTACATGCTTTAAGGCATTGATTTAACAGGGATTGATTAATGTTTAAAGGAAGCATTTTAAAAAAGCTAAATCGCCTGGTAAATTTTTAATGAAACCTTGAAATATCAATAGGTTTATGATATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : TTTTTTAAAATATAACAAAAAAGCAAAATCCGCATCAAGTTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 4837-4546 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000041.1 Clostridium tetani strain 132CV contig_0042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 4836 31 100.0 33 ............................... AGCATCTTTTTTCTTATCTTCCACTGTAAGTTG 4772 31 100.0 35 ............................... TTTTCCAAACTTGCTTATTAAGCTGTTATTCATTA 4706 31 100.0 35 ............................... TTGGCACAATCAATACTGTATCTCCTATATTTAAA 4640 31 100.0 33 ............................... TAGCTTGAGAACCTGTTGGTTGTGAACCTTGTT 4576 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 5 31 100.0 34 GTTGAACCTTAACATAGGATGTATTTAAATT # Left flank : AAGTGGAAGAAACCCATATAAATGCAGAAGATAATATTAAAAAGATAATAGGGGTTTATTGCTAAGATTAGTTATATAAAAAAGAAATAGAATAATAAACAGAGTTCTTGGTTTTAGAGGGAGTTTTTACTCCCCATAAAGCTTAGAAATCGTTATCCAGGGACTTAGCTACTCTTTACTCCCGCTTTAAAGAAAATGGAAGTATTAGAGCTTATCGTCATCGGATAAACTAAAAGCTCTCACATGATGGGAGTTTTTAGTTTTTTAACTTATAAAAATAAGTATATACTTATAGTGTTATGAGATAAAATATAAATAAAAGTTTTCCCAGGTGACTTCAAATGAAAATATAGCTTAGAGTCTTGATTTATAAGGGGTTACATACTATTTTTAAATGTGATTTTTCAAAAGTTAAATCGCCTGGTAAATTTTTATGGAAATGTTGAAATATCAATGGTTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : AAGTTCCTTTCTTTTTAGTGGAGTACATAGATAGTATGCAAATGCTCTTAATAGCAATTTAAGGAAATATATGGTGTAATGGCGTTGTTATAAATTTGAAGGAGTGATATTTCATGAGTATTTTAACAAGTTGTATTATTGGACTTGCTTTTATTGTAATTGGATTGGTATTAAGGGCATATCCACCGCAGCATATAAATAATAGTCTTGGATATAGAACACCATTTTCTATGAAAAATAAAGACACATGGTATGAGGGAAGTCGTTTCTACGGGACAATACTTTTAATAAGTGGTATTATTTTTATACCATTTTCAATATTAATAAGATATTTATATAGCAATAATTTAAATTTATCAATGGGAATATCGTCATTGAGCTTGTTGATTATTATAATTATAGGTATTGTATATACCGAAATACATTTAAGAATGATATTTGATAAGAATGGAACAAGAAAATGAGATAGTTAAAGGGAAGTCTAATGACTTCCCTTATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 7183-6958 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMAZ01000041.1 Clostridium tetani strain 132CV contig_0042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 7182 30 100.0 36 .............................. AAATACACCTGTTGAAAACTACCTTCCCCACCTTCG 7116 30 100.0 35 .............................. TCACTTGTATAGATAATTTGACCTTGTTTTTCATC 7051 30 100.0 34 .............................. GATAAAAGGAGTATGGGACGATACAACTAAAGAA 6987 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 GTTGAACAATAACAAGAGTTGTATTTAAAT # Left flank : GTTATTTTACTTGATGCGAATGCTACAGTAGTTAT # Right flank : TATACATTAAAAAAACTTAGCCATGTCTTTTAAACCCATGATTATTCTGTCTAAATATCTTATTCTATGCTAATATAATAGGGTGAGGAGAGTGAAAGTTATATGAAAAAAAGATTTAATGTAACTGGAACCTGTATACCAGAAAGACACTATATGGTAGATATATCTAATAAACTAGATAGTATATTAAAATTGGTAAATAATGAAGAATATTTTATTATAAATAGACCAAGGCAGTATGGAAAAACCACTACTTTATACATGCTTGAAAGATATTTAAATAAGTTTAAGGATTATTTAGTCATTTCTATAAGTTTTGAAGGGATTGGTGATTTAATTTTTCAAGATGAGAAGGTATTTTCAAAGGAATTTTTACAGATAATGTCTGATTCTCTTTTACTAAATAGCCAGGCATTGTCTGAGTGTTTAGAGGAACAAAAGCCACATGTAGAAAACTTTATTGACTTATCAAGAGTTATAACCAAGTTTATTGTGAAAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACAAGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //