Array 1 603679-604372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003139.1 Streptococcus thermophilus TH985 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 603679 36 100.0 30 .................................... ACTTTGTTTGGGTATTTTTCAGGTAGTGTA 603745 36 100.0 29 .................................... AGAGTTAAGCAGAGTTTTGGTACCAAATA 603810 36 100.0 30 .................................... AGAAACCTTAGCCCATAATTTAGTTAATCA 603876 36 100.0 30 .................................... GTATACGCAAACAACTTGCCAAAGGAACTC 603942 36 100.0 30 .................................... GCGATACACGTATGGTGGAGGAATAGGTTC 604008 36 100.0 29 .................................... TTCATTAGCAACGAACAGCATGACCTTAT 604073 36 100.0 30 .................................... CTGACAAGCTCCCAAATTTTTTTATAATCA 604139 36 100.0 30 .................................... GTCGATACAGAACAACGTGCTGCAAGAATT 604205 36 100.0 30 .................................... GAACCCACTCACAGAATTTGAGGGCAATCT 604271 36 100.0 30 .................................... TTGCCATAATTACCTCCTAAGCCTCAACTA 604337 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTTACAAAAATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAGGCTCTTTGTCAACTGTAGTGGGTAGATGAAAAGCTAAATTCTTGAGAGGACCAGTTTGGTCTTCTCTTTTTTAATATTTACTGCCATCAAAATCCGTTTCTTAAAGTTTTCAAAGTTCCTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAGTCTTTCTAAAATGATGGTTTAGTCGCTTTTCATTATAGGTCATATGGGACTTTTTTTCTACAATCAAAAAGGCTCCATAATCTCCATAGAGGATTTACCCACTACAGAAATTATAGAGCCCTTTTTAAAATACACGATAAACATAAGGATTATCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 905212-904265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003139.1 Streptococcus thermophilus TH985 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 905211 28 100.0 33 ............................ TGGATGAATACGTTTGGGAAGATAAAGCAGATG 905150 28 100.0 33 ............................ TAGAAACTAGCACTTGAAATAGAGATTGGAAGA 905089 28 100.0 35 ............................ TGATATTTTGGATCTCAATTGGCTTAGAGCCATTA 905026 28 100.0 33 ............................ TGGTATACATTGATCAACTAGGTATCTGGCAGA 904965 28 100.0 33 ............................ CGGAGATGCCCAAACTAGGTTAGTTAACAAATG 904904 28 100.0 33 ............................ TAGTATGAGCGTTCAACAATCTATCGTAAACTG 904843 28 100.0 33 ............................ TGATAGAGGCTATAGGATAAGGTTGTGGGTTGA 904782 28 100.0 33 ............................ TGAACGTTCTATCTCGACGGATTCAGCGCCATC 904721 28 100.0 32 ............................ GACAATTTTGTTGGTTTCTATACAAGATTTAA 904661 28 100.0 34 ............................ CGCTGAACCCAAAGCTTTTAATATCTGTGAAACA 904599 28 100.0 34 ............................ TAGATGACCACGTCCTTGACCGATAGAACGCATA 904537 28 100.0 33 ............................ GGAGACGTTTTACAAGCTAACGAATAGTGCTGA 904476 28 100.0 33 ............................ CACAGTGCCTAATGCGGATTATCACTGGGGAAC 904415 28 100.0 33 ............................ TGGTTCAGACGGTACAGCTGACTGCTCTGGTTC 904354 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 904292 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ =================================== ================== 16 28 99.8 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGAAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1320860-1319041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003139.1 Streptococcus thermophilus TH985 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1320859 36 100.0 30 .................................... CCTCGCTGACAATGAAGCAACTATAGAGTA 1320793 36 100.0 30 .................................... TCTTGAATTTCTTATTGTGTTTGTAAATTA 1320727 36 100.0 30 .................................... CAAGTTCTTTGCGAGTGTGGATTCTTCTGT 1320661 36 100.0 30 .................................... ATATTTGTCTGAACCATTCAGCATTGGTAT 1320595 36 100.0 30 .................................... GGTCCATAGGTATTTTCCTTTAACCAAAGC 1320529 36 100.0 30 .................................... AATCTAGTAATAACGTCCATCGCTTGCTCA 1320463 36 100.0 30 .................................... CAGTAGATATACCTTGACCGATACCCATTG 1320397 36 100.0 30 .................................... AAGTAGCAAATAAAAAAGCACCCGCTTATT 1320331 36 100.0 30 .................................... ATAATCCTTAATCATTTGTTCAAAAGAAAC 1320265 36 100.0 30 .................................... ATTTAAAGATAATGACTTGTTTGACGGCTT 1320199 36 100.0 30 .................................... AGTGTCCGTTGTGTAATCATCTTTGCCATT 1320133 36 100.0 30 .................................... AAGATACTCACTCATATCTTCCAGCGTTAC 1320067 36 100.0 30 .................................... TCAAAAACGGAGACTTAAAAGCGGTAAAAA 1320001 36 100.0 30 .................................... ACCATGTCGTTCTAGTCCAGAGGTATTCAC 1319935 36 100.0 30 .................................... GTCTATCTCATCTTGTATGTCTTCAATTGC 1319869 36 100.0 30 .................................... GTTACCGCTGAAATTTGTATCTGACATGTC 1319803 36 100.0 30 .................................... TCACAAAGCGTCTACTGGCATTCGCGGTAA 1319737 36 100.0 30 .................................... TAATTATGTCGCCACTCACGGATATGCCAA 1319671 36 100.0 30 .................................... GGTCTTTACGGAGGGACAACTGCTTTAGGC 1319605 36 100.0 30 .................................... TCAACACATGTCTCTTCTTTCAACAAATAT 1319539 36 100.0 31 .................................... AGTAGATAGTCCTAATCCTCAAAATTACAGT 1319472 36 100.0 30 .................................... TTTCTTTTTTTTGAGGCGCTCAGTTGGGTC 1319406 36 100.0 30 .................................... TAACAAGCCTTTGCTGATGACGATTGGAAC 1319340 36 100.0 30 .................................... TTTCCGAAAAATTGCATCCCGCTTGCTAAA 1319274 36 100.0 30 .................................... TTTTGGAATACTAACGCCCGTAAACTTATT 1319208 36 100.0 30 .................................... TCAAGTATTAAAAGCAAATATGAAAATCGT 1319142 36 100.0 30 .................................... GGTCTTTACGGAGGGACAACTGCTTTAGGT 1319076 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTCTTATACGAAACTTTTAATGTATATAATGAATTAACAAAAGTTAGATTTATTGCCGAAAGTATGAGAGATTATCAATTTTTAGATAGTAAGCAGAAGAAAGATATTGTTAGACTTTATTTTAAAGATAAAAGGAAAGTTACTGATAAGGATATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTCTGATTCAGGTAGAACCTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAAATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATACCAATGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //