Array 1 460904-462456 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXN01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3897 NODE_2_length_696975_cov_59.315719, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460904 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 460965 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461026 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461087 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461148 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461209 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461270 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461331 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461392 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 461453 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461514 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461575 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461636 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461697 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 461758 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 461819 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 461880 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 461941 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 462002 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 462063 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 462124 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 462185 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 462246 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 462307 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 462368 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 462429 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478771-479288 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXN01000002.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-3897 NODE_2_length_696975_cov_59.315719, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 478771 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 478832 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 478893 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 478954 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 479015 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 479076 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 479137 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 479198 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 479259 29 93.1 0 ............TC............... | A [479286] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //