Array 1 5276-7255 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWC01000018.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5808 NODE_18_length_90909_cov_57.786048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5276 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5337 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5398 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5459 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5520 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5581 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5642 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5703 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5764 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5825 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 5886 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 5947 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6008 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6069 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6130 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6191 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6252 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6313 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6374 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6435 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6496 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6557 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6618 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6679 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6740 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6801 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 6862 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 6923 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 6984 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7045 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7106 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7167 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7228 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23828-25687 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWC01000018.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5808 NODE_18_length_90909_cov_57.786048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23828 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 23889 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 23950 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 24011 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 24072 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 24133 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 24194 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 24255 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 24316 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 24377 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 24438 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 24499 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 24560 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 24621 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 24682 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 24743 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 24804 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 24865 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 24926 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 24987 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 25048 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 25109 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 25170 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 25231 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 25292 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 25353 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 25414 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 25475 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 25536 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 25597 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 25658 29 96.6 0 ............T................ | A [25685] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //