Array 1 1707376-1707648 **** Predicted by CRISPRDetect 2.4 *** >NC_012560.1 Azotobacter vinelandii DJ, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1707376 29 100.0 32 ............................. TGAGCCTTTCGTACGAAACTTGGAACACCAAC 1707437 29 100.0 32 ............................. TATGCCGAGGCTCCGCTAAGAATCATCAAGCC 1707498 29 96.6 32 ..........T.................. TCGGTGACGAACCGCCGGGGGATGACGACCAC 1707559 29 96.6 31 ............A................ ATGATCGGGTATCCGGTCGCCGTGCTTGGGA 1707619 29 79.3 0 ..A.......T.A.C..A.........A. | G [1707645] ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 GCGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : GCTGCAGGTGGTCGAGGCCGACGCGCTGCGCCGGGCCCTGGCCAGCGGCATCGGACCGGCCAAGGCGTTCGGTTGCGGCCTGCTCAGCGTGGCGCGCTGCTGATGCCGCCGCCGCTCGAGCCGCTGCGGATGAAGGCGCGGATGTCGATGATCCGCTGCCGCGTACCTTGCGGCGACCGTCGGCATCTTGTCGGTCCGGCTGGGAGCGGCGGACGTACGCCTGCATGCCGGCGGCCGGCCGGACGCACCCGCGAAATGATCTGGTAGCACCTGGCCGGAGGCTGCGAGGAGGATGGCAACCTGCTCATGGCCTGGACCAGCCGCCACGAATCCGGCCACGAGTTCCAGACCCAGGGTGCGAACCGGCGCCTGCCGGTCGAATTCGATGGCCTGCACCTGATGGCTTTCCATCCGCCGGAAAAGCCCGATCCTTGGCAGGAAAAACCGGTAGATTTCTGGCATCTGGTTTTTCCCTTTGGGAACAATCGGTTACGCTAAGT # Right flank : GTAGTGCCTAACTCTTAAGCGTCTTATGGGGGCTTCCCCGCGTCATCCACAGCCTCATGACTGAGGCTTGTACCCGCGGGCTGGTGTTGGAGGCGAAACTGCCGTCGGGCGGGGAGGGTCTGGATCGGTCCGGGAGTGGCATGTGGAAAAGCGCTACGTCGAGTCGGCGAGGGAGCGGGTGGCGGAAAGGGTGAAAGATATGCAGCGTAAAAATAGCATCTTGCGATATTTGAGCGCGGGCAATATTCTCCGTATCGCGAATTGCTATACGGATGTCGCGGTATGCATGTCATCACACAAAAGCGCATCTGGGAAGCCAAGGAAAAGTGGCCTCACTCCGCATCCGCACTGGATGCGTGGTATCGCCTGATGAGCAAGCTGGCACCGAAGGATTTCGCCGAGATGAAACAGGCCTTCCCCAGCGTGGACAAAGTGGCGGACAAGCATGTGTTCGACATCGGCGGCAACAAGCTGCGGCTCATCGCCGTGGTGGACTACCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1708697-1709210 **** Predicted by CRISPRDetect 2.4 *** >NC_012560.1 Azotobacter vinelandii DJ, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1708697 29 79.3 32 .TTCC..G...A................. GGCGCGAACTCCAGCCGCTCTTCGAGGCGCCG 1708758 29 96.6 32 .T........................... GTGCAGGTGCGCTTCGTCGGCAACAGCGTCAG CG [1708770] 1708821 29 100.0 32 ............................. CTTCTCGACGGCTCGATCAACCGCGTCAGGAT 1708882 29 96.6 32 ..............G.............. CGCGTTCTTGCCAGCCAGCAAGCATCCGAGCA 1708943 29 89.7 32 .T..........CC............... AACAGGCTGGCGAGTCCGAGCGCCGTGATTCG 1709004 29 75.9 32 .T........TACCCA............. CTGTTCTACCAGCGCACGCTGCCGCTGCTGCA 1709065 28 72.4 29 .T.........CCCC..-.....AG.... TTCGGGCGGCCGCATTCAGGGGCCGCGTC 1709122 28 82.8 30 ..........-.T...........G.TA. TTTTTTATGGCTTTTTGATATTATTACGAG G,A [1709124,1709127] 1709182 29 79.3 0 .TA......A..CA..T............ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 85.8 32 GCGTTCCCCGCGGGTGCGGGGATGAACCG # Left flank : CGCAACCAATGGAAGTGAGGTGCCCATGAGCAAGCTCCTGAAACAGGCCGCCGAACACTGGCGCTACGTCGCTCCGCTGCTCACCCCGCCGCAGACCGAGGCCGACTACGACGCCCTGGTCGAAGCCCTCGACGAGTTGCTCGACGAGATCGGCGGTACCGAGCAGCACCCCCTTGCCGCCCTGGCCTCGCAGGTCGGCGATCTCATCGCTGCCTACGATGCGGAGCATTACCCTATTCCCGACGCCCCGGGGCATGAGGTACTGCGCTACCTGATGAACGAGCACGGCCTGAACCAGAGCGACCTGCCGGAAATCGGCGCCCAGTCTGTGGTGTCGGAGATCCTCAACGGCAAGCGTCAGCTCAATGTTCGGCACATCCGTGCATTGGCCGAGCGATTCAAGGTGCCGGCGGACGTGTTCCTGTAGCGGTCCGCCCCTCGAACGGGAATCTGGCCGGTTCGAAGAGGGTCGCACGGGCATTCGGAGATAGGCGGGAAGC # Right flank : GGGTGTTCTCGGCCACTAGAAAAGGTAGAGAGTAATGCTCGCTCCCCGCATCCGCGGGGATGAACCGGTTCATGCCGACAGCTACCGCCGACTCGTTCACGCCATTCCGGAAAGGGCCAGGTCTTTTTCGGGAGCGGCGAATTTTCGTCTCCTTTGTCCGTCTTTATCCGATGCCTCGATCGACGATAAGGAGTATGTCCGTGAAATCCAGGCTCGCGCTTGGCTCGTTCGTCGCCGGCATTCTGGCCTGCGATGTCGCGCTCGCCGCCCGTTTGCGGCAGGATTGGTCGGCCGCTCTGGAGGGGCAGGGCTGGTTGGCGGCTTGTCCGCAGGTCATGGCGGATGCTTCTGCGTCGAAAGAGCCGGCTGTACGTGGCAGCGAGGAATGGCGCAACCATATGGTCGTCGCGGTGGGCTGCCTGTTCGAGATGCAGCGCGACGCCGAGCTCATCGCCTTCCTGAACGCCAGTCTGACCGACGGCCATCGCGACCCGGAGCTG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3263057-3261022 **** Predicted by CRISPRDetect 2.4 *** >NC_012560.1 Azotobacter vinelandii DJ, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3263056 31 84.4 34 ..TG-A.A........................ ATATATTTGGAGCTGCTGGGCTGGCATTTCTAAT 3262991 32 100.0 33 ................................ TGGCTAAACGTAACCGCCAGCTCGGCCAGTCTG 3262926 32 100.0 34 ................................ GTGTTGTCGCGCAGGGTCAGGAAGGCAATGCCGG 3262860 32 100.0 36 ................................ GCCGGTACGCGCACGCATCACCGCATGTGCACGCGC 3262792 32 100.0 34 ................................ CTCTCGTTTCGTCGGGATCACCGCCCCAGAGCAG 3262726 32 100.0 35 ................................ TCGCTGTAGCAAGGCCGGCCTGGGGATATGAAATC 3262659 32 100.0 34 ................................ GGCATAGCCCGTACTGGTTGCATCCCAGTCGCGA 3262593 32 100.0 36 ................................ GTCGGCGAACTCCTCCAGGTAGGTGGTCATCTGCTG 3262525 32 100.0 34 ................................ TGGAGATGGGCCTCGACTGGAAGCCGATCAGCCT 3262459 32 100.0 36 ................................ GTCCAGGCCTCAAACGCGGAGAAAGCCGCGTCGGTA 3262391 32 100.0 34 ................................ GTCACGGTGAAGAAGGTCGCCGAGCGTCGCTTGC 3262325 32 100.0 34 ................................ ACCTACGCCTCGGCGAGCGAGAAAACCCGCTACA 3262259 32 100.0 35 ................................ GCCCCGAGCGTGGGCAAGTTCATCAAGTGGTGCCA 3262192 32 100.0 35 ................................ ATGCCGACGATGGCCATGGCGATCAGGCCTCGCGG 3262125 32 100.0 34 ................................ AACACATAGTTGCCGGTGATGGCTTCGTTGCCGA 3262059 32 100.0 36 ................................ CATGCGTGGGCGGCCCAAGCCTACGTCGAAATTCGC 3261991 32 100.0 37 ................................ AGCGATGACGAAATCTCGTGCATGGACTCTCACGCTC 3261922 32 100.0 34 ................................ GCAGATCCAGCAAGGGAAGGCTGGCGTCAAGGCC 3261856 32 100.0 35 ................................ AACCAGTTGTGCGGCAACACCGCTGTGGCTGATAC 3261789 32 100.0 36 ................................ AGTTCCAGCATTCGGAGAGTACGCGCAGTTGTGGCT 3261721 32 100.0 34 ................................ TTTGTCGCCGCCGGAGGATTCAGGGCCATCAGCG 3261655 32 100.0 35 ................................ GGCATGACCGAGCACTACGCTCGCGAGGAAGCCAG 3261588 32 100.0 34 ................................ ACGCCTGACGAGCTGGCCCGCACGCTCGCGAGGC 3261522 32 100.0 35 ................................ TCGCCTGGGCGAGGCTCGTCTGCAGCGCCGCGTCC 3261455 32 100.0 34 ................................ ATGAACACGTCGCCGCCGGCGGCGATATACGCCT 3261389 32 100.0 36 ................................ ACCACCTGACCGGCGCCTGATGCCGGCCCTGCCCAT 3261321 32 100.0 34 ................................ TGCTGGAGCAGTGCCTGGCCGATGGCCCGCCAGT 3261255 32 100.0 36 ................................ GGCCTGATGCGCCAAGCCACTCACAGCCATACCGAT 3261187 32 100.0 34 ................................ ATCTTCCCGCCATCAAAGAATGCCGAGCACGTCA 3261121 32 100.0 36 ................................ CCGCGCAGTACGCCGGCAACACCGGAGTCATTCACG 3261053 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 31 32 99.5 35 GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Left flank : GACGCACCTGGCCATCGCCCTCGGCTACCGGGCAGCACAGAGCGGCCTCAAGACCCGCTTCATCACGGCGGCCGACCTGATGCTGCAACTGGGCGCGGCCCAGCGGCAGGGCCGGCTGAAGACCTACCTCAACCGCGCCATCCTGGCCCCCCGACTGCTAGTGATCGATGAGATCGGCTACCTGCCGTTCGGTCGCGAGGAGGCCAACCTGTTCTTCCAGGTCGTCGCCAAACGCTACGAGAAGGGTTCGATGATCCTGACCTCGAACCTGCCGTTCAGCCAGTGGGCCGAGGCCTTCAGCGGCGACGCCACGCTGACGGCGGCCATGCTGGATCGGCTGCTGCACCATGCCCATATCCTCACCCTGACCGGAGAAAGCTACCGACTCAAGGACAAACGCAAGGCGGGCGTCATCCGCCAGAACCGTAACCCCGAGTGATCCAGGTGGGTCATTATTACTTCGGCAAATAAGGGCCAAGGTGGGTCAGTTTTCAGTCGGC # Right flank : AGGTAGTAGCGCCGCCGGAACAGGTCAGACCGTGACGGGGTAAACCTGGTAGGTCCAATGAGTGATGGGCGCAGCCCTCAGCTCGCTCAACAGATGAGGACCTCGTCAGCGGATTCCATCAGGGCCAGCAGGCTCGCCGGCCTGCACAACAGGCCGGATATAAGACTGCTCCTACCTGCACGCCAGCATGATTACCCATTGAGCTCCGGGAGGCGTCCATATAAGGGCCTAGCGCCGGTTCAGGCCCCGTGCCAGGCGGTCGCCGCCGTACTGCAGCAGGCAGACCAGGGCGACCAGCACGACGATCACGGTGATCATGGTCTGGCTGTCGAAGCGCTGGTAGCCGTAGCGGTAGGCCAGGTCGCCCAGGCCACCGGCACCGATGGCGCCGGCCATCGCCGAGGCGTTGATCAGGGTCACCAGGGTGATGGTGAAGCCGCCGACCAGCCCCGGGCGGGCCTCCGCCAGCAGCACGTGCCAGACGATGTGCCGGCGTTGGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 4 3266353-3265050 **** Predicted by CRISPRDetect 2.4 *** >NC_012560.1 Azotobacter vinelandii DJ, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3266352 32 100.0 34 ................................ TTGATCGCGGTCAGCGGGATGCGCCCCAGGGACG 3266286 32 100.0 35 ................................ ACGATATTGAGCGTCGAAGTGCTGGTCACGTTCGT 3266219 32 100.0 34 ................................ AACACCATCCCGGGGCCGGGAACGCTGCGTAAGC 3266153 32 100.0 34 ................................ CTCGGCGTACAGAACGCCCTGCCCTCGCCGGACA 3266087 32 100.0 35 ................................ AGCGACTGGGCGATCCCTGCTCGCGACCAGCAGGA 3266020 32 100.0 35 ................................ ATCTCATTTCGTCTCGCAAGCCGAATCACTGGCGG 3265953 32 100.0 36 ................................ AACAAGGGATACGTTTGGATCAACAATTAAAGCAAC 3265885 32 100.0 35 ................................ TTCACGTCTCTGCGCGTTCCGGCATGATGCGAATT 3265818 32 100.0 34 ................................ CCTGTATGCCGCTGTGCACGCTTCGCACCGGCAG 3265752 32 100.0 34 ................................ TTCCCATGGCTTTCAGGGACCCTATGGGTGGAGC 3265686 32 100.0 35 ................................ AACGAAGCCCCGCAAGAGGCGGAAGCGCCCTCCGA 3265619 32 100.0 36 ................................ GCCGCCATCGAGATCAAGCGCTCTGGGTGGGGCTAT 3265551 32 100.0 34 ................................ ACGATCAGCGCACCGTCATCGACGTACGCAGTCA 3265485 32 100.0 35 ................................ GGGCCATCAGCGATCCACTCCGCTTGAGAACTCCG 3265418 32 100.0 36 ................................ TTTGCTCAGGGACTGAGCCGCATCGGCCAAGCGTAG 3265350 32 100.0 35 ................................ AGGAAGGCCAGGCTAGCTCCGGCATAGGTCTGCAC 3265283 32 100.0 35 ................................ GGCAGCGGGTCTATCCCCTCGCTCTGCCCACCCTG 3265216 32 100.0 35 ................................ ACTGCCCTGTCCAACCGCCGGGCGCGCAAATACAA 3265149 32 100.0 36 ................................ CGCCAGGCGCAACTCGGCCATGCGGGCCACGCTCTG 3265081 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 100.0 35 GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Left flank : TACCCACCCTTCATCTGGAAGTGAGCCCCGACCATGATGGTTCTGGTGAGCTATGACGTGAGCACCGAAGGCGACGGTGCCCGCCGCCTGCGTCGCGTCGCCCGCGCTTGCCTCGACTATGGCCAGCGCGTCCAGTATTCGGTGTTCGAGATCGAGGTCGACCCGGCTCAGTGGGTGTTGCTCAAGAGCCGGCTGTGCGAATTGATCGACCCGGAAGTCGACAGCCTGCGCTTCTACTACCTGGGCCGGAACTGGCAGAACCGGGTCGAGCACGTCGGTGCCAAACCTGTACTCGACCTGAATGGCCCGCTGATCCTCTGAACCGCGAACCCCAAGCGACCGGCAAAACTCCGGCAGGTTCGCGCGCTACTTCACAACCCGGATTTCCTGCCTGTCTGCCCTGGCTTCGCCCTCGACTGGACAGAGAAAGGCCGCTGCATCCGCTGGTTCGCATAGAGTCGGCAATTCCACTTTGCAGATCAACAGGTTATACATACGGG # Right flank : ATGCCGCGCACGGACTGGCGGCTGAATTTCGATTGTCACGCCCCTGTTAGCGCCGATGTAAAACTGACCCACCCCAGCGAAGTAAAATTGACCCACCTGGGCTAACGTCGCGGCCTTTTCGAGGCCGCCCATGTTGACCCAGGAGCAAGCAGTGGAGATCAGAGTATTAGCCCGTCAAGGGCACAGCATTCGGCAGATCGCCAAGATGCTGGGCGTGTCCCGCAACACCGTCCGGCGCTACCTCAAGGAGCCCACCGTCCCGCGCTACTCGCCGCGAGACCCCAGGCCCACCAAGCTCGACCCCTTCCATGACTATCTGCGCGAGCGGGTGAAGCAGGCGCATCCGCTCTGGCTGCCGGCCACCGTGCTGCTGCGCGAGATCCGCGAGCAAGGCTACCAGGGCGGCGCTTCCCAGTTGCGCGCCTGGCTGGCCAGACTCAAGCCGAGCAGGCCGGACGATGGCCCGGCGGTGCGCTTCGAGACCGAGCCCGGCCAGCAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCCATGCGGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA //