Array 1 499776-508012 **** Predicted by CRISPRDetect 2.4 *** >NC_010803.1 Chlorobium limicola DSM 245, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 499776 30 100.0 37 .............................. CAGTGATAATATCTAATTCCTTCGCCGTATTCTTTTC 499843 30 100.0 36 .............................. ACGTTCTTGATATGCGAATACGTTACCATCGTTGGC 499909 30 100.0 37 .............................. CAGGGCAACCTTTCCGCAATCGGTACATTTACCGCTC 499976 30 100.0 37 .............................. TAAAAACGTAACCTCTCCGATGCAGGTTATGCGAGGA 500043 30 100.0 35 .............................. CTATCTTCACTGTGGTGAATACGGTGATAAAACTG 500108 30 100.0 36 .............................. TACGGATGGTACAACATCTTTCGGTCTGGAATCTAA 500174 30 100.0 37 .............................. TTAAAGAACGAACAGCTCGCGTTATGCCTCTCTACTC 500241 30 100.0 39 .............................. ACGCTAGAATTAGTAATCGGCTGAGTACCTCCTGTATTA 500310 30 100.0 36 .............................. AGATTTGTAGTTCCCTCGGTGAGACCAAGAGCTTTA 500376 30 100.0 36 .............................. TTACCGCCCATAGCCGACAGTACTGGATTTAGACCT 500442 30 100.0 36 .............................. TATAAAGAACGCCTTAGTAATGTCTTATTAGGTGCT 500508 30 100.0 36 .............................. TAGCAATTGCTAAAGTATTTGAAGCCTCTTGTAAGG 500574 30 100.0 35 .............................. TGTAATCGTTCCCGGCAAGCATTGCCTTTACACCG 500639 30 100.0 35 .............................. GTCGTTTCGGGTGAGTTCAGTGATCTCCTCGACCC 500704 30 100.0 36 .............................. GAGACCGCAAACATCAGCAGCATGTAGGCTGGATTG 500770 30 100.0 37 .............................. ATATAGGCTTGATCGGTGTTGCAAGCCGCCCAAATCC 500837 30 100.0 36 .............................. CAGGGTATCTGAATCGGCATATCGGAATAAGCTTCT 500903 30 100.0 36 .............................. TTATTGATTCAACAACCTCATCAACCTTTTCCGGAG 500969 30 100.0 35 .............................. GCGACATCGCAACGCAGGCCCTTGTCGACGGGCTC 501034 30 100.0 37 .............................. TCAAGAACAACAGCGTTACCGGAGACAGATCGTGTGT 501101 30 100.0 35 .............................. CAGTGCGGGCATGGCACAAAGTTCCGGCGCTGGTC 501166 30 100.0 36 .............................. TTGAGTAGGCCTCCGCGATATCGAGCGTCGGGAGTA 501232 30 100.0 35 .............................. TTGCACTCCGTGACGGGTAAGCCCGTCTGATTCCG 501297 30 100.0 36 .............................. TTGAAAGCTGATCCGCATAGTCTGCGAGCTGTGATG 501363 30 100.0 38 .............................. CTTGCTATTTGTTGCAGGGTTGGCAAGGTTCGTCACAG 501431 30 100.0 37 .............................. TCGTTCATCTCATGCACCAGCCCCGCAAGCGAAACCC 501498 30 100.0 37 .............................. GCATTACAGCAACACGTCCCTGTCTGTCTATTGCGGA 501565 30 100.0 36 .............................. TTAAGTTGCGTCCTTCCGCCTGAGCCGTCTTGATGA 501631 30 100.0 37 .............................. CATTGAGAGCATTGACGCACACGTACGCGGCATTCAG 501698 30 100.0 38 .............................. CAGCAATCGTCGATAAGCGAGTGATGATCTTACTGTTC 501766 30 100.0 36 .............................. ACAGATTCGCCGAGTCCAGCGCAGCAAGCGCCGCCT 501832 30 100.0 37 .............................. CCCGGAAGGCCAAGTCCATCCAGATACGCCTGTTCAA 501899 30 100.0 37 .............................. TGAGCTTGCTCAAACGCTCGGCATCGCCGTCATGGTG 501966 30 100.0 36 .............................. GGATGAGCCATCGATGTTTCCCGATACGCATTCCGA 502032 30 100.0 35 .............................. GCGCATCAACACCGCCCTTAAAGAGAGCCTCACCG 502097 30 100.0 37 .............................. GCTGCAGGAAGTCAAAACAAAATTCCCGTTCTGGGAA 502164 30 100.0 37 .............................. GTTTTTCGAGTGGAAGATAAGCCAGGGGAGGACTGAA 502231 30 100.0 37 .............................. ATTCGCTCCGCATGTCTGATGACGCTCCGGTAAATCT 502298 30 100.0 38 .............................. AAAAGCGTATTCCCGACAATGGCGATTTTCCCTTCCGA 502366 30 100.0 38 .............................. GGGTAGCTATCTATTATTTCGTCAATGAGCCATAGCGT 502434 30 100.0 38 .............................. TTCTTCCACGGAATAGCGTTGTAGCCACCCTTTCGCAA 502502 30 100.0 37 .............................. TTGCGGAACTGCGCCGCCGTGGCGTCTGTGTCCTCTA 502569 30 100.0 37 .............................. TGGAGTAACGAGAAATGCCTCAATCGTCATGATTCCC 502636 30 100.0 36 .............................. GCATGCGTACCAAGTCCAACTCTGCAAGCAAACGAA 502702 30 100.0 36 .............................. GCATCAACGGGGAGCAGACAGTGAAGAGGTTAAACG 502768 30 100.0 37 .............................. CTCGTACTTCTCGACTATCGCAAGCTGCTCTCTGCAT 502835 30 100.0 36 .............................. CGACAAAGCGTGGAATCAGACCATTGAGGATCATGT 502901 30 100.0 38 .............................. CAATCAAACATGCAAGTAATTAATAACATCCTGTACAG 502969 30 100.0 37 .............................. AATTAAAGTTCACAAAAGAGCTGCTGCGCTACTTCAA 503036 30 100.0 36 .............................. CAGTGCAGGAGGTCATTAATCCTTACATTGTGGTTA 503102 30 100.0 37 .............................. GTATTTAATGCCACTGAGGAACTGCATGGTATTCCGT 503169 30 100.0 38 .............................. TAATCATGTTATAGCAAATGTTGACGGTTTGCAAGATG 503237 30 100.0 37 .............................. TCTGTATCAATCCCCATTGCATGCTTTCGTGCCAGCC 503304 30 100.0 37 .............................. AGGCTTATTTGCTGCGGGCGGAACGAAACGCTCTTGA 503371 30 100.0 38 .............................. GCGTTTTTGATGTTCGAGGCAATATGGTGCATATCGAA 503439 30 100.0 38 .............................. TGTAAGCGCATTGTCGACGCGGTTCATGAGCATCCCGG 503507 30 100.0 36 .............................. TCCATCCGGAGTTTTCCATTTCTTTGCCTTCGGATT 503573 30 100.0 36 .............................. TAAGAGGATCAGCGCCCATGCGCTGAGCCATATTCA 503639 30 100.0 35 .............................. TCGGGTGTCACCCTCACAGCTACTTGAGCCAGCTT 503704 30 100.0 36 .............................. GCAGCGTAAGAGGTCGTCGCCGACCACTCCGCGTAG 503770 30 100.0 36 .............................. GTGTCAGTCGTGCCCATTACATCAAGTTTCGTGGGC 503836 30 100.0 38 .............................. GTTGTCGTCGGTAGAGTGATCTCTGTACCGGACGCATC 503904 30 100.0 37 .............................. ATCTCAAAAACTGATATAGTCGCTGCAGCATCAGCAC 503971 30 100.0 35 .............................. CAAAAGGATTCTATCTCGGATGCGGAGGGAGTTCC 504036 30 100.0 36 .............................. GCGTTCATGTTTTTAAGAACAGCACCTTCATAACCT 504102 30 100.0 41 .............................. TACTCTTGCGTTATCACCGTAAACGCCACCGTTCGGTATTG 504173 30 100.0 37 .............................. TTTTTGAACAGTCTTTTTACTTCGCTTCCGAAGCGAT 504240 30 100.0 37 .............................. ACGTCTGAGGATTTTCGTAACCCATAATCGTGCTTTG 504307 30 100.0 39 .............................. TCGCAACAAGCTGCTTGCGGAAAGCGGTGCTGAACTCCG 504376 30 100.0 37 .............................. GTCGATTGAGCCGTTATGCTCGATTCCGTCCAGAAGG 504443 30 100.0 39 .............................. AGCTCTTGAATCTGGTCTTTAAGCAGCTTGTGTACAGAG 504512 30 100.0 38 .............................. GCCGAAAGGCCCGACTCAGCAGAAATGCTACGAAATGG 504580 30 100.0 36 .............................. TGCAAGCGCCTCCTGCTCGTTGCCGCTGCCGCTGAA 504646 30 100.0 35 .............................. CCGAAAGTGGCGGAGAAGGACATGAAGGCCATGAA 504711 30 100.0 36 .............................. TCCGACAGCGGGCCTCCACCCTGCGACAAACCAGTT 504777 30 100.0 36 .............................. TTCGCTATCGATCGTGGAATATCCCTCACGATCGGG 504843 30 100.0 36 .............................. TCCGAAGCATCACGCTGTCCGGATCGGCGAACGTTG 504909 30 100.0 41 .............................. TTACCTATTTCGGTAGGTATCTCGGTTTCCGGATCGTTCTT 504980 30 100.0 37 .............................. TAAGTGTTGGCGCGGAATTGTTTTATTTAAAAAGATC 505047 30 100.0 36 .............................. AGAGAATATATATTGAATTTGTGAGTCAAGTCAAAC 505113 30 100.0 35 .............................. CCGGATTAATGTTTATAACCGATGAACCACCGCCG 505178 30 100.0 37 .............................. TATACCGGAGACGTAGGGAGATGTATGTACGGTGCAA 505245 30 100.0 36 .............................. AAAACACCCGCCTACGCAGGAATCCACGACACCCTG 505311 30 100.0 37 .............................. TCGCAGCTGTCATATCGAGATAGGCGTGGCCTGTCTC 505378 30 100.0 37 .............................. GTCTGGCCCGCGCCGTTCACCTCTGCCGCTGAGCCAC 505445 30 96.7 37 ..........T................... AAATAAACAAGCGCTATCGCCAGTTTTTTTTAAACCA 505512 30 100.0 37 .............................. TAGTAAAAATTTGATGGGTTCGGGTACGCCAGATGCA 505579 30 100.0 37 .............................. TCGAAGGCCGCAGGCAGCTCTTCAAAGCCCTGCCCCG 505646 30 100.0 37 .............................. TCAAGAATATGTGAACGATACAATTTCGTTCCTTTTC 505713 30 100.0 39 .............................. CTTGTACTGCGTAACATAGCCGTAGTAGGCTTTGGAGTT 505782 30 100.0 36 .............................. GATAGAGGTGTTGTCGCTTCCGCTTCCGCCTGCTTT 505848 30 100.0 38 .............................. AACACTGGCTGTAATCGGTCAGATACCCCGCTGTCCCG 505916 30 100.0 36 .............................. TCAGCAAATACGCGGCAAAACGCCGAGACATCACCG 505982 30 100.0 37 .............................. GCATGCGCAGCTGGGGAGCCGTAGCCATCAGCACCGA 506049 30 100.0 36 .............................. ATGATCAAGACCGGAGAGCACAAGGTTACCAAGATG 506115 30 100.0 36 .............................. TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATG 506181 30 100.0 36 .............................. GATATTTAGAGTTGCAGATACTGTCGCCCCATCTCC 506247 30 100.0 36 .............................. GAAAAGAACACCGTTACTGGCAGCGCATGTGCAATT 506313 30 100.0 36 .............................. TGAGCTACAAGCATCCTGATCAGCCTACAAGCACTC 506379 30 100.0 37 .............................. GACACGGTTATACATGAAAGGATCGGCACGTAGCTGG 506446 30 100.0 36 .............................. GCAAATCATTGCAAGCTGTGAGGACAGCATCGATCT 506512 30 100.0 38 .............................. CTTATCGTCACCATGCAATTCTTTATGATTTCTTTTCT 506580 30 100.0 36 .............................. GCGATAGACGCCTGTACCTGTATTTCGAGTATCTTC 506646 30 100.0 39 .............................. GGTGAATTGCCGCCAGTAGCATTTTCAGAAATCGTACAA 506715 30 100.0 36 .............................. GCGATAGACGCCTGTACCTGTATTTCGAGTATCTTT 506781 30 100.0 36 .............................. AAAGCCCTGCAGGGATACCTTCCCGAAACGTCCTGA 506847 30 100.0 36 .............................. CCGTAATGGCCGCGTTGTCTGCCGGCGCATTGCTTA 506913 30 100.0 36 .............................. CGATGATTGATAAGGTTTATGTAGATGCTCAACAAG 506979 30 100.0 38 .............................. TTGTGCCGCATATCGTTTTACCGACTCCAGCAAAACGT 507047 30 100.0 36 .............................. AAATATTCCGTACCCCTCAAGGCCGAGCTGATCCAT 507113 30 100.0 38 .............................. ATGCAAGACATCTCTTGATCTCGTTCGTTTATTCGCTC 507181 30 100.0 35 .............................. ACTGATTTTTCGATCTCGGCCATAGGCGTCTTGAA 507246 30 100.0 37 .............................. ACCGTACCATAGCCACAACAGGCTTCGACACCAGCGC 507313 30 100.0 37 .............................. TGAACCAGCTCATCCGCTGGATCCTCGAACTCAACCG 507380 30 100.0 37 .............................. CCGGAAACTCTTTATCATATCTCCTCCATGTCAAGCA 507447 30 100.0 37 .............................. GCCTTCCTTGGCCACAAAAAGGTCAGGAAGTATCCAT 507514 30 100.0 36 .............................. TAAAAGTAGAAGTAGAAGTAGAAGTAGAAGTAAATG 507580 30 100.0 37 .............................. AGAATTTTCATTCGGTGTTTGAAATAAATCTCAACAA 507647 30 100.0 37 .............................. GAGGACGGTTATTGTCCCTGTGACATCGATAGTGCTG 507714 30 100.0 36 .............................. TCAGGCTCATGATGTAATCCATCGCCCATCATTTCG 507780 30 100.0 37 .............................. TCGATCCGGCATTCCCGGATGATGAAGCGCCGTTTTA 507847 30 100.0 38 .............................. CATGGACAGGTTGCAAGGTTGGACTGGTTTCCGGTTTG 507915 30 100.0 38 .............................. CCTTTTTGGCGGCTCCGAACGATCGAATCGGTTGCCCG 507983 30 96.7 0 ........A..................... | ========== ====== ====== ====== ============================== ========================================= ================== 124 30 99.9 37 CTTATAATTGCACCAATATGGAATTGAAAC # Left flank : TCAGACAAGATGGAAGAGGCGCATCTGTGGCAGCTAAAATATTACTTATATTACCTGAAGAGTTATGGGGTTAATGGAGTAACCGGCAAGCTTGACTACCCGAAGCTCAAGAAGACACTTGACGTTGAATTGAGAGATGAGGATGAATTGCGAATACAGGAGATTTTTGATGATATGACGAGAGTCGTCACACAGGAGAAAGCCCCGGAACGAATAAACAAGAAATTCTGCAAAACCTGTGCATATTATGAATTTTGCTGGGCTTAGCTCATTTTTTATCAGTCAGACTTGTCGTCGTAGTCAGTTTTTTTGTGTCAAAACGCACCAAAACAGTCAAATCCAGTAATTTATTGAATTTATAATTATTTATAAAATAATGACATAAAGCATGTCGTCAGACCCCCGGAATTTTTCCGACACGCAACCCTGACGACAAAAATACAAGATTATATATTTCAGAAGTCAATAAAACCAAGCCTTTCCAGCCGTTTGAAGCGCGG # Right flank : CTGAGGAAACAAGCAGGGACGCTCCTTATTACTGTAATTAATGGTGCAAAGATGCCTTCCCCGGTGTTGTCCGGGTGTTGCGGAATTCCTTTGTCCGGAAAGCGAAAATGCTCCGAAGTTCAGCTGCAGGATGGCAGACCGGCGATACAGGCAGCGGGTTCAAAATATCTGAATCAATCTGGATATTTTTTATCGAGAATTGCGGCGATGATTCATTTTGTTTTTTATATCTTCCTGCGAGAAAAGAGGTTATCGCTCTTTGACCTGTGGTGTGCCTGATCGGGTTATGCTACGGCAAAAGGACGCGGAGCTACTGTCCCTCAGCCGGTTGCTGCGTGACCGGGTCGCCCGGGAGCCGGAAAGCTTTGTCTGTCATGCATAGTCGTTTTCATAACAGATCAACAAAAAAGGAGCATACCCCATGCAAATCTGCAACGAAGAGCCAATTCGCACCCTCGCCTATCAGCTCTGGCTCGATCGCGGCGCACCTTTCGATAACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATTGCACCAATATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1009935-1011874 **** Predicted by CRISPRDetect 2.4 *** >NC_010803.1 Chlorobium limicola DSM 245, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 1009935 35 100.0 35 ................................... TTGCAGGTCTTCCGCCTGCGAGCTGAATCATGTCC 1010005 35 100.0 35 ................................... GTTCTTCTTCGATGCGCTGGCGTTCTGCCTCTTCA 1010075 35 100.0 36 ................................... TCATATTGCACTTTCGGCATTGCCATCCTCCACTTT 1010146 35 100.0 36 ................................... AACATCCCTATTGTTTTATCGTACAACTCGTCACTT 1010217 35 100.0 40 ................................... TCGGAGACATCCTTGTAAGCCTTCACAACATCATTAAAGT 1010292 35 100.0 37 ................................... TTATCTCGCGCCGGACGATGTTGTCACCGCAGTACAC 1010364 35 100.0 38 ................................... TAGCCGTCGCCTGCCACTATGCTTTCCATACAGGCACC 1010437 35 100.0 39 ................................... TATTGTGCAACCCAGATTTCGACACGGCGATTTCGCTCC 1010511 35 100.0 39 ................................... AATCTTCAAACTTAATTATTGTTTCTGTTTTATTATATA 1010585 35 100.0 42 ................................... ATGCACGTCTTACTCATACTTCTCCCTCCGTTTTGCTCAATT 1010662 35 100.0 38 ................................... CTTCTTCCCGGTCGCAAGGCGTGAGCACCGCCGTCACC 1010735 35 100.0 40 ................................... TAATCACACTTCCTGACCGTAGCAGCCAGCGCCCCGTCTG 1010810 35 100.0 36 ................................... TTAACTCGATAGCGTATGCAATGGCTACGCAAGGGA 1010881 35 100.0 38 ................................... TTCCAAATCTCTCATGTTAGCTATGTCCTTATAATCAA 1010954 35 100.0 40 ................................... CTCAACCCCATGTAAAAAAGACATAAGACATCTATTTAAA 1011029 35 100.0 40 ................................... GCCACCACTTCAGCCTTATCAGTAATTCCCGTAAGATAAA 1011104 35 100.0 39 ................................... TACAGGTGGTACACGCCGTCTTTGCGGAGCACTCCCCCG 1011178 35 100.0 36 ................................... AACAAATGGAGCTGGGTCGACAACCCGTAGTGCAGC 1011249 35 100.0 38 ................................... TAAGCGAATAAACCGCATATAAACCCGCGACCAGCAGG 1011322 35 100.0 39 ................................... TTTGGTTCCGGTCTGGTGGTAGCCCATGTATTTGATTGC 1011396 35 100.0 37 ................................... TTGCGTCGAAACCTTGTTTCGAAAGTTTTCTCTGAAA 1011468 35 100.0 38 ................................... TTGATTTAAGCACGCCGGCGTTCAGCAATTGCCCCCCG 1011541 35 100.0 39 ................................... TTTCCATTTCCGAAAGTATTTCTTCAGCTTTTTCAAGAT 1011615 35 100.0 37 ................................... CTTTTGGCTGTTAATGATGCGGTGGGTCTTGCCACAG 1011687 35 100.0 39 ................................... CCACCTCTCCCTCGATGCTTACTGCATCACGAGGCGAAT 1011761 35 100.0 44 ................................... AACCGTTTGATGCTGCTGCAATCGTCATGCCATCACGGAGAACA 1011840 35 82.9 0 ...............T.............AT.TTT | ========== ====== ====== ====== =================================== ============================================ ================== 27 35 99.4 38 CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Left flank : CATCAACAGGGGTCTTCTGCATGAAAACGACTTTTACTATCGCAAAGATCAGCCGGGCTGCTTTCTCTCGAACGACGCCCGAAAACGTTTTTTACAGATTTTCGAAACAAGAATGTGGCAGGAATCCCGGGACGGCTACACCGGCAAAACGCTCAACTTTCGGCGGCATATCGAAAAGCAGGTGAGAATCATGCGGGATGTCATATCCGGAACCCGAACGCAGTATGACCCGTACAAGCTGGTATGGTGAAACCGCAGCTCATTTTTCTGCGAACCGGAAATAGATGATAAAATCAGGTAATTGTAATGAATATATAAGGTTAACCGTAATATACAGGATAATTGAGCTGCGGTTGTTGTATAACTGAATAAAATATCATAACATGCAGATGTTGTACAGGAGTAAAATCAGACCATTGTCCCTTGACATCGCTGATTTTTTATCGAGCTGCGGTTTTCGCGCCTGGAGCCCTTGCCAGACAAGGGTTTCCAGAGGTACT # Right flank : TTAGTTAAGAGTGCTTGGTTCTAAGTTCTGAGTGTTATATCGAAAGACAATTATTCTTTTACTGGCTACTAATTCAGCCTATTACACTCATTAAGAATAAGTTTCGTGATCAGAGAAGAAGTGATTTGTGATTGGTGTCAAGGCAAAGAATAAATAAAGTTATTTTCTGCGGCTTACGGCATACAGTCGACGGCTAATCCTATTCAGAATATTGGGTTTACTCAGGATATAATTCGTGACGAGAGAAGACGTGATGGGATAAAACAGAAATCAGAAAACATCATAATCATATTTTCTTAATACGGCCAACTGCATACGGCTCACTGCACACAATCTTTACATATTTTTCGTAATCCATTCTTCAGCGGTGGGGTGTGTGACGGGGAGGTTGTGTAGAGCTGGGGCTCGGCATTTCTGGACACTTCCGGTACTCATAACTCAGAACTTGACACTCAGAACTCAGAAAATATGCAATTCATACTTGTAACGTACGATATCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 1015192-1017079 **** Predicted by CRISPRDetect 2.4 *** >NC_010803.1 Chlorobium limicola DSM 245, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================================================================================================================================================================= ================== 1015192 35 100.0 40 ................................... CTGCCCTGTATTGTCTCTTCGTCCGGATCGTTGCCGGGTT 1015267 35 100.0 37 ................................... TGTCGATGACGCTATCCATCCTGCCGTTCCATTACTG 1015339 35 100.0 37 ................................... TCTAACTATAACGAAGCCGGTCGCCAACGTTACACCG 1015411 35 100.0 36 ................................... TTAATAGCCCTTTTTCTTCCTTCTTTTTTAATAAAA 1015482 35 100.0 37 ................................... TAAAGTTAGGTTTTGATTGTTTACATATACCATGATA 1015554 35 100.0 40 ................................... AAAGCCGCAACAGGATTTGCTGACATCAACATAGCTGCTG 1015629 35 97.1 42 .....................C............. TCCTTCGAGAAGCGCTCCGGTTTGCTTGAAAATATCCAGCGC 1015706 35 97.1 40 .....................C............. TGTGTTTAGTGATTTTTGAAGATGGAAATTGTAAAAAACT 1015781 35 97.1 37 .....................C............. ATCCCGCACCGCCGACCTGCGGTTAAACTCCTCATCA 1015853 35 97.1 48 .....................C............. CTTTCCCGTAGTAGAGAGCGCGATGCTGATATGCCGAATGCACAGAGA 1015936 35 97.1 36 .....................C............. TCAACGAATCTGTCCCTTTCCTGCTGCACCTGCCGA 1016007 35 94.3 35 .....................CC............ GCAGTGGACTTTATGGTGTATTCCATCCAGCCGAA 1016077 35 94.3 39 .....................CC............ GTCCGTGCTCCAGCCTCCGGCAGCCTGATTTTTCCAGTC 1016151 35 94.3 37 .....................CC............ GAACAAATGAACCGCGTTCCAACACCCCAAGGAACAC 1016223 34 80.0 136 ...................G.CC.....-...GTT TCGAGATCAGAGAAGAAGTGATTCGTGATTAGTGTCAAGTCAAAGGATAAATAGATTTAATTCCTGAAGTTTACGGCGTACCGCCTACAGCTAATATTTTAATACGGCCCACAGCATACGGCTCACTGCACACAAT 1016393 35 85.7 225 .............................AT.TGT TAGTTCAGAGTGCTGAGTGCTGAGTGTTATGTCGAAAGCGAGTTATTCTTTTACAGGCTACTTACTACCGGCTCCTGACTACAGATTAAACCTATTGCACTCATTGAAGATAAGATTGGTGTAGAGGGAAGAAGTGATGAGTGAAAAGATTAAAACAGAAATCAGAAAACATTATAATTATCTTTTCTTAATACAGCCTACTGCATACCGTTCACTGCACACAAT AC [1016397] 1016655 35 100.0 36 ................................... ATATCGATCGGGGTACCTTCCGTCAGTTTGGCGACC AC [1016659] 1016728 35 88.6 107 .............................A..TTG GTGTAGAGGGAAGAAGTGATGAGTGACAAGATTAAAACACAAATCAGAAAACATTATAATTATCTTTTCTTAATACAGCCTACTGCATACGGCTCACTGCACACAAT A [1016757] 1016871 34 82.9 136 .....................CC.....-...GTT TCGAGATCAGAGAAGAAGTGATTTGTGATTGGTGTCAAGTCAAAGGATAAATAGATTTAACTCCTGAAGTTTACGGCGTACCGCCTACAGCTAATATTTTAATACGGCCCACAGCATACCGCTCACTGCACACAAT AC [1016875] 1017043 35 80.0 0 .....................CC......AT.TGT | AC [1017047] ========== ====== ====== ====== =================================== ================================================================================================================================================================================================================================= ================== 20 35 94.3 62 CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Left flank : CATCAACAGGGGTCTTCTGCATGAGAACGACTTCTACTATCGCAAAGATCAGCCGGGCTGCTTTCTCTCGAACGACGCCCGAAAACGTTTTTTACAGATTTTCGAAACAAGAATGTGGCAGGAATCCCGGGACGGCTACACCGGCAAAACGCTCAACTTTCGGCGGCACATAGAAAAGCAGGTGAGAATCATGCGGGATGTCATATCCGGAACCCGAACGCAGTACGATCCGTACAAGCTGGTATGGTGAAACCGCAGCTCATTTTTCTGTGAACAGAAAATAGACAACATTAGCAGGTAATTATAATGAATATATAAGGTTAACCGTAATATACAGGATAATTGAGCTGCGGTTGTTGTATAACTGAATAAAATATCATAACATGCAGATGTTGTACAGGAGTAAAATCAGACCATTGTCCCTTGACATCGCTGATTTTTTATCGAGCTGCGGTTTTCGCGCCTGGAGCCCTTGCCAGACAAGGGTTTCCAGAGGTACT # Right flank : TTAGTTCAGAGTGCTAAGTGCTGAGTTTTGAGTTTTGAGTGTTATGTCGAAAGCGAGTTATTCTTTTACAGGCTACTTACTACCGGCTCCTGACTACTGATTAAACCTATTGCACTCATTGAGGATATAGTCAACGCTAAATTCTAAGCAATAAGTATTAATTGTGTAGGCAAATTTATTTTACTGAATCCTGTTCTAGCTTCTATCACCTGATTTATTTTATAGTGCTTATTAAGAATTAGGATGCATCAATAATAAGCTGTGTCAATACGTCATTGAATCTATTATATCCCATCGAAATGCTCTCGAAAACAAGACGCAAGCTTTCTTTATAGTTTTGTATATAATTTTTCAAAACTTGCTTTGAAAAAAGACTGTCTTTGTGTTAATTTAGTTTTTTGTGTGCTTTTGATGTGTTTATGCGAGAAATGTGATGGTTTTTTGTGGTTTTGTCTTACATTTATCTATTGTGGTTTTGGAGCCATCGGAATTTGAACTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:-2.28, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCTAATTGCACTCATTGAGGATTGAAAC # Alternate repeat : CTTTATATCTAATTGCACTCACTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //