Array 1 21231-21394 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBU01000015.1 Streptococcus mutans strain UAB-26 NODE_15_length_22883_cov_23.2946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 21231 32 100.0 34 ................................ ACTCGCAAAAGTAAAAGATGGACAATCATCTCAC 21297 32 100.0 34 ................................ TAGATATGGTTAAAGTGCCTGAAGCACCAGCACC 21363 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTGAAATCAATCGCATAGTATATGAAATGAGTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTGGTATAATAAAAGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAATCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACCGTTTCAGAATATTTTTGGTTGTTTCATTCTCATTGGTTAGTTTCGTCAAACAAATATTTCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24271-23508 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBU01000001.1 Streptococcus mutans strain UAB-26 NODE_1_length_356806_cov_21.8757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 24270 36 100.0 30 .................................... GTGTACAGAATGCGTAATCGAAAAGATGAA 24204 36 100.0 30 .................................... GCCTTATAAACTTATTGGTTCAAAGCCTGA 24138 36 100.0 30 .................................... ACATACGGTGCTCCGCTAATCTTTTTTAAG 24072 36 100.0 30 .................................... ATAATGGCAAAAATGCAGTAGTCTATGCAG 24006 36 100.0 30 .................................... AGGCATTTTGGAAATCACTTCTGAAATGTG 23940 36 100.0 30 .................................... CAAAAAGCAAGATAGAAGCGCAGGATAATT 23874 36 100.0 31 .................................... CCCGTTCCAATGGTAAATCAACTAATTATAT 23807 36 100.0 30 .................................... CGACCACTTCTGAAGTGACTTCACAAGATT 23741 36 100.0 30 .................................... CAGGAAGCGGACGCTTCTTGTACTTCCTAC 23675 36 100.0 30 .................................... TTTATGCTATCATAATAACTTAAAAAGTGG 23609 36 100.0 30 .................................... AAGCAAGGGATTAGACTTTATCCAAGTGCC 23543 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTGTTGGCATCTTATCTTGATGAAGGGTTGGTTCTACCCATTTCAAGCGATATTCAGAAAATATCTGTTGAAGATGGTTTTGCGACCATGATTCAAGCTGATCCTAGTCCTTATCTCAAAAATAACAAAGCTATTCGGAAAAATGTTACCGTGCCTGAGTGGTTGATACGATTAGCAGACCGTGACCGAGTAAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTTAGGTATAATATAAGCAATCAAAACCTTTTAAAAAAGAATCATTTTGAAGCTGAAATCTGGCTGAGATGAATGGCGCGATTACGAAATGTCGAGACAAAAATTGGTCCACGAG # Right flank : ATGTGAAAAGAAAGTAACTACTACATTTGAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 126571-125689 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBU01000001.1 Streptococcus mutans strain UAB-26 NODE_1_length_356806_cov_21.8757, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126570 28 100.0 33 ............................ TGTCTTCTAACCGATCGAGTTCCATCCAAACAA 126509 28 100.0 33 ............................ TCAAAGTTGTTGGTGAAGGGAACAAATATGTTC 126448 28 100.0 33 ............................ TGCAAGCAACGACTTGACAATCACGATATACAA 126387 28 100.0 33 ............................ TGATATTGACTGTGTCATTTCCAAACTTTCTAA 126326 28 100.0 33 ............................ TAGACTTAATGCCATCAACTTCAACATCTCTAA 126265 28 100.0 33 ............................ TACTGATTTGTCAGTTGCAAGGCCTAAATAGCC 126204 28 100.0 33 ............................ TAGACTTAATGCCATCAACTTCAACATCTCTAA 126143 28 100.0 33 ............................ TACTGATTTGTCAGTTGCAAGGCCTAAATAGCC 126082 28 100.0 33 ............................ TGGTTTTTTTGTTGAATAATCTCGCCTCTTTTA 126021 28 92.9 33 ..........................TT TGGTCGTTAGTGGATAGAATTATAGACCTTATC 125960 28 100.0 33 ............................ TGGATAATTTATATTCTAAATTATTTATTTCTG 125899 28 100.0 33 ............................ TGAAAGGTCGTTAAAGTTAAAGCTGATTTGTGG 125838 28 100.0 33 ............................ ATGTTGATTTTACTTCCATAGCCGTTGCTACTG 125777 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 125716 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //