Array 1 57655-54388 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNJJ01000009.1 Cohnella terricola strain G13 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57654 32 100.0 32 ................................ ATAACAACGTTCCGGAAATTCCTTCAGCAGTC 57590 32 100.0 34 ................................ GGCAAACGTGATAATTTTCGCCGGGGAAGCAGTA 57524 32 100.0 34 ................................ ACACTTTTACCCTTATATGTATCATTAAAATCAT 57458 32 100.0 34 ................................ CCTATCATCCTCCAGAGTGGTTAGTAGAGCAGCT 57392 32 100.0 34 ................................ GTTTTGCCTGCGAACGAACCAAAAAGTGAGAATG 57326 32 100.0 34 ................................ CCCTTGGCGATTTCCGATTTCGCCCACGCAACCT 57260 32 100.0 33 ................................ ATAATCTGGTTCGTACGTCTCCTCTGGCGCCAG 57195 32 100.0 33 ................................ GAGAAATGCAATCTCCTTATCGATCGCCGCGAG 57130 32 100.0 34 ................................ CCAAAGGAAACCGTCAAATCCATCCATGCATTAA 57064 32 100.0 33 ................................ TTGCTTCCACGGGTTGGCTTGTCCGCCGCCCTT 56999 32 100.0 35 ................................ AGCGTCCCATGACCATATCGAGAAGGATCGTAGAA 56932 32 96.9 34 .......T........................ ATTCCAAGTCGCCGAGCTTTCGCTCGAACTGAAA 56866 32 100.0 33 ................................ AGCGCCTCATCAATATCTTGGTAGGTCGGATTA 56801 32 100.0 33 ................................ CAGAATGCGCTTATATTCGGCGGTATCCTCATA 56736 32 100.0 34 ................................ AAATAACGCTCTTTTGTACTGCCTGATATGTTCG 56670 32 100.0 33 ................................ AATTTCTTTAATTGCTCTTTCAAGGCCGTGATA 56605 32 100.0 35 ................................ CAAGATGCCGGGCTACGTTCTCGAGCGCCTTGCCC 56538 32 100.0 33 ................................ CATGTAACGTATCCGGAAACGGTCGTTCCGTCT 56473 32 100.0 34 ................................ TGCGCTCCCCAATTGGAATACATACATCGCAATA 56407 32 100.0 35 ................................ TCAACTCTTAGATTTTTTAATACTGAACCAATGCC 56340 32 100.0 35 ................................ TGGTTCACGGTGAATGGAACGTTATCCGTCGGAGG 56273 32 100.0 34 ................................ TCTTTGCTCAACTGCTGCAATCTCGATTCGTCTT 56207 32 100.0 32 ................................ TCTCGTCGACAATGCTTTTTAATTTATTGTAG 56143 32 100.0 34 ................................ CATCATTACGCAACACCCGCCAAACTAGGCGGAA 56077 32 100.0 34 ................................ CATTACGTTCATGTCGACGTTCCCCGGGATCCCC 56011 32 100.0 34 ................................ TTATCCGGTGGTAGCAAGGATTATCCATAACATC 55945 32 100.0 34 ................................ TTACGATGCTCGGCCTAACCAAAGCAGAGATTGA 55879 32 100.0 36 ................................ ATCAATATTAGCTTCCGAAGTTTCGCGCACTTGGAA 55811 32 100.0 35 ................................ TCCCTTTGCTATTGGTAACCGAAAATCCTTCGCAG 55744 32 100.0 36 ................................ CCACGCCTTGCGGCTCTTCTTCCAGCCTGCGCCCGG 55676 32 100.0 33 ................................ TCCATCTTAAACCGATCAAGGTCGATAATATTT 55611 32 100.0 35 ................................ CTCCACTTTGCCGCAGTTCGTTGACTTCACTCTCT 55544 32 100.0 33 ................................ TAATCCAGAAAAAGGAGCATACCCGGAAATCGT 55479 32 100.0 34 ................................ AAAAACATGATTCAGTGGTGGTGATTAGTTTGGA 55413 32 100.0 33 ................................ AAAAAGCATATGGTCAAGCACGCTTTGAAAGCG 55348 32 96.9 35 ......................A......... ATTTTGGATGTCTCGCAGCACCCACCTTATACCGT 55281 32 100.0 33 ................................ TGCGCTCTGCTGCATAGGCTTCGACTCGCGCTT 55216 32 100.0 34 ................................ TCTAAGTTGCTTACGGATCGTCTCCATTGCTTGG 55150 32 100.0 33 ................................ TGTTCTTTTGCGTGGTTCCTTCTGTCCTTTTTA 55085 32 100.0 34 ................................ CTTGTACCGTGCCCCCTTTGACGTTAACGGCGGC 55019 32 100.0 34 ................................ ATCTTGGCGAGCTTCTCGGCTTCCGTCTTGGCGT 54953 32 96.9 35 .......................A........ TACACTTGGTGAATGGCCTAGCTCGGAAGTTAAAT 54886 32 100.0 34 ................................ GAACGTGGTAAGGCTATCGCTGTACCATCGCCGG 54820 32 93.8 34 .............G.C................ GTAGCCGCAGACTGGTAGCCCGTGTTCGTAACCG 54754 32 96.9 36 .........G...................... CGCCGTTAAGTGGTGTGCCGGTGATCGGGTTGACTT 54686 32 96.9 34 ...T............................ CTTACGCTTATACGATGGTCGAGACCGTACTCCC 54620 32 100.0 35 ................................ GTTTAATCGCGCTCTAGCTTGATGTAGAGCAGGTT 54553 32 100.0 36 ................................ AATTACAAACGAATCCGGAAACGTTCGATTTGGATC 54485 32 96.9 34 ...........A.................... ATCATGCACATAGCTCCCGCCCCGGAATCCGTTT 54419 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 50 32 99.5 34 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Left flank : TCCCTGATTTGATGGCACACTTTACACAATGGCTTAAAGAGGAAGGGGCCAATTTACATCCCGTTGCCAGAGCCGCAGCAGTTCATAGTGAATTCGTAAAAATTCATCCTTTTGTTGACGGCAACGGACGTACTGCCCGACTTCTTCTGAACTTTGAGCTCATGAAAAACGGGTATCCCCCTATTGTCATCGAAAAAGAACAGCGGCTTGCTTACTACACAGCTTTGGATGAAACGCATATAACTGGGGATTTTTCAAAGTTTATCAGTTTCGTAATACCAATTATCGATCGTACTCTCGATTGGTATTTGAAGTTATTGTAAGGTTCTACGAAGTGCGAACCCCAAGCGCACATGATTTTCCCGGGGGATTCGCACCCCTTGCTACACAAGGGCTCTCGGGTTTCCATGTCATTTTCGGGACTTTTTTCGCATCAAAAATGCCGTTTAGCACTTTTGAGCTTCAAATCCCTTGCCCTGCAAGGACTTAGTGAGCCTGCT # Right flank : AGTGAGGTCTTTCTCGGCCTTGTAAAGTTCCTCGGTCGCTCCCCATGCTGGTAGCCCGTAGCGGATTCTCACCGCCAATTTATCGCCCATGCCGGGCACAACTAAACAACCTTAGTCCGGTAAAGTACCGAACTAAGGTTGCATAGTGCTCTACAATTCTTACTCCGATTCCAAGATTCGCAGAAACTTCAACAGCATGACCGCCGCTTCTGCGCGGGTCATGACATCGTTAGGGCGAAGGCGCTTACGATGATCTCCCTGCAGCAGACCTGCCGAGATGCTCTCCGATAGGCTCTCGACAAACATCGGGGAGACATCGGATTTGTCCGCGAAGTCGTCCAACCTTCCCCCTCCGGCAGGTGTCGTTATCGATCGTTGCTTCAATGCCCGCATCAGTATGGCCGCCGCTTCGGAACGAGTAATCGGCGCCGCCGGTGCGAATATAGTCGACGTTCTGCCCGTTATAATGCCCGCTTCCAATGCGGAAGCAATATCAGCCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60303-58758 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNJJ01000009.1 Cohnella terricola strain G13 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 60302 32 100.0 34 ................................ ATTGACAATAGCGAAGTATCGCGACCGCAGTGCA 60236 32 100.0 34 ................................ GGACTTCCGATAGAAAACGCGATCCCCCTCGATA 60170 32 100.0 34 ................................ AAACTTAACTCGTATCCAGTTTTGCAAGGCGAAG 60104 32 100.0 33 ................................ GCCACGGCTAAGACGGCCACAAAGCCAGAGAAC 60039 32 100.0 35 ................................ TTGTTCCTGTTGCCTGATTGAGAATTTGCAAATCT 59972 32 100.0 34 ................................ AATTTTGTTCAACCGTCTCCGCACTTCTTGTTCG 59906 32 100.0 33 ................................ TTTGATACCTACAGTCGCTTCCCTTGCATTGAG 59841 32 100.0 34 ................................ TCAATTAGCATCTTCCGAGCATGTCCGCTTCTTG 59775 32 100.0 33 ................................ TAAACTCCAAAATTGCTAAACGGGCGGCCGTAC 59710 32 100.0 33 ................................ CTGATAATTCACAAGACCTACAGCGTCGGCGGA 59645 32 100.0 34 ................................ TTTTTCAGGTCAGCTTTCATACCTTCAAGATACA 59579 32 100.0 33 ................................ CGACATTATCCCCGATCTGAGCCAAACGAGAAA 59514 32 100.0 34 ................................ ATTCTCTCGCCTACCGGCTTCGAGGGTGATTTTT 59448 32 100.0 34 ................................ TTTTGGCGGTGTTCCGGCCGTTTGCTCGTATGTT 59382 32 100.0 34 ................................ CCTTGGCTCTGGAAAAACACGGCTATGGCGCGGG 59316 32 100.0 33 ................................ ATCCGGACCCGTCTATGCAACCGGAGTCCTCAA 59251 32 100.0 35 ................................ CCTTCTTGCGTAAAATAACGGTAAAGTAAATACAC 59184 32 100.0 34 ................................ TTCCTACAATTCCCGGAGGTACGGCCGCCCGTGG 59118 32 100.0 34 ................................ ATTAATGCAATAATAATTCATAATTTCGTTTTGC 59052 32 100.0 34 ................................ GGCAACGGCGTTCCCATCGTGCCGAGATTTTCGA 58986 32 87.5 36 .........CGT.......T............ TTTCCTTCCCTAGCGAACACCGACTCGTCCACTCGG 58918 32 90.6 33 .........CGT.................... ACGGTTCCCCCAGCTCAGGAGGCGTTACCGGAC 58853 32 87.5 32 ......A....TA..A................ GCCGTAGCGAGATCTATCTCAACCTAAATATC 58789 32 78.1 0 ...T......GTA..AA.....A......... | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 97.7 34 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Left flank : TTCCTGATTTGATGGCACAATTTACTCAATGGCTTGAAGGGGAAGGAGTCAATTTACACCCCGTTGCCAGAGCTGCAGCAGTTCATAGTGAATTTGTAAACATCCATCCTTTCGTGGACGGCAATGGACGTACTGCTCGACTTCTGCTTAACTTTGAGCTCATGAAAAACGGATATCCCCCAATTGTCATCGAAAAAGAACAACGGCTTGCCTACTACACCGCTTTGGATGAAGCTCACACAACCGGGGATTTTTCGAGATTTATCAGTTTTGTCATACCAAATGTTGATCGTACATTCGATTGGTACTTAGAACTGCTGTAATGTTCTACGAAGTGCGAACCCAAAGCTCACATGATTTCCCCGGGGGATTCGCACCCCTTGCTACACAAGGGCTCTCGGGTTTTCAGGTCAATTTCAGGACTTTTTTCGTATCAAAAATGCCGTTTCGCACTTTTGAGCTTCAAATCCCTTGCCCTGCAAAGACTCTGTGAGCCTGCT # Right flank : ATATTGTTAATGTAGTCTAGCTTGTCGAGGGGCTTCAGCCCCTCCCTTTATGATCACAATGTTGATGATATAAGCGACGATAATTCCTGCATTTCAGCTACCTGCAAAGTTTACTAACCTACCATCCTTGGGAAAGCTTATAATAGAATTAATTGTAAATGTGATAACTCCTCGAATTATGAATTGTGAGGTGAAACTGATTGTTTGACTCAATCGATCAGAAAAAACAACGGCTCGACACCAAAAGACCATTCCCTACCCATACATTAAAATCAATCCGCGAACACTTAATCGTTAACTGGACCTACAACTCCAATGCGATTGAAGGCAATACGCTAACCCTATCTGAGACTAAGGTTGTTTTAGAAGGTATTACCATCGGAGGTAAAACCATATCTGAGCATCTGGAAGCTCTTAACCATAGGGAAGCTATTTTATATATCGAGGAGATTGTGAAGCAGAACCATGCTTTGACAGAGTGGCAAATCAAAAACATTCAT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 69355-67434 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNJJ01000009.1 Cohnella terricola strain G13 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================= ================== 69354 32 100.0 34 ................................ GTGATCGGGTACCGGGAAGCGCTCAAGCTTCCGG 69288 32 100.0 34 ................................ TCTGCACTGGCTTGAGCATAAGGAGGGAACGAAT 69222 32 100.0 34 ................................ CATTTGCTTTTCACCTCGTGAGGCATCGCTTTGT 69156 32 100.0 33 ................................ CAATCGTTCCAGTGGACTCGCACGTCACTTCAT 69091 32 100.0 34 ................................ CATCTCCTGCAGCAGCCGGGCTTGGGTGTCAACC 69025 32 100.0 34 ................................ ATTGCCGTGCGTGTATAATTTTGAATTACAAAAT 68959 32 100.0 33 ................................ TTTTGAATTGGAGGAGTGACTATGAAGCCACGT 68894 32 96.9 34 ................G............... CTTCATCGATCGCATCCCGGACGCAGGCGCGGAT 68828 32 100.0 34 ................................ TTTGGCCTGTGCAACGGTCTTAATCCCGTCGGCA 68762 32 100.0 35 ................................ CTAAATGCGCTCTACGGTAAATTCGGGCAGCGCGG 68695 32 100.0 34 ................................ ACTGTAGTGACGTACCTATAATCTGACCAAGCAA 68629 32 100.0 35 ................................ GTATACTTTAATAGTACCGGATGCTGTGATTTCGA 68562 32 100.0 34 ................................ TGGACATAAATTATTCTTGATATAGCGATCTCCC 68496 32 100.0 34 ................................ ACACCGCTGAAACTGTTTTACCGGAGTGGTTGTC 68430 32 100.0 34 ................................ TTCATGTTGTTGCTGCCAGTAGGAGGACACTTCC 68364 32 100.0 35 ................................ TGCTATACGGCATGGTGCAGGTGTACAACCCTCGC 68297 32 100.0 34 ................................ GAGGGCGGAACGATCGCGATCGGAAGTGGAAACA 68231 32 100.0 33 ................................ AGTAGTCCCATCTTTACCCACGTAGGACGGTAA 68166 32 100.0 33 ................................ ACTTAGCAATGCCCCACTCGTAACCCCGTTTAC 68101 32 100.0 33 ................................ TCTCCTGCGCTTGCAGAGCTTTCCCAGGGCGCA 68036 32 93.8 34 ..................T...T......... GCATTTAAAACGACCCAGGACTATTATCTGAGCC 67970 32 96.9 34 ..................T............. TCTGGGACGTAAGCCAGATTGTTCCAGAGTTCAG 67904 32 100.0 33 ................................ TCGCATTTCAACTATGACCCGCAGGTGCTTTAT 67839 32 100.0 33 ................................ AAAAAAGCCCCAATCCGTGCCTTGGTTGTTTGT 67774 32 96.9 34 ........................G....... CCGCAAATCGTTCGCCAAGCCGCTTTTCGAGCAG 67708 32 100.0 35 ................................ CCTTCTCATCGTAAACCATAATGCTCAGTCTCTTA 67641 32 90.6 34 ...........T.C..............T... CGGGTTGAGTTGACCACTCGTTTCGGATGCGCAC 67575 32 90.6 77 ...........T.C.........A........ TGACACAAAGGTTGTAGCAACACAGTCAACAGCGGTCGTCTCCGTCGACGCACAACTTGATGGCGTTTGTTATGGTC 67466 31 75.0 0 .G..G....C.T.CT-...T............ | A,C [67448,67457] ========== ====== ====== ====== ================================ ============================================================================= ================== 29 32 98.0 35 GTCGCCTCCGGCATGGAGGCGTGGATTGAAAC # Left flank : GTTTGGGCCGGCGCGACGTGAGTTGTTCGATGATTTCGAGTTATTCCAAAGTTTGGAACGGTGTGTAGCGAGTTGCTCGATGATTTTGAACAATTCCCCGTGTGGGAGCGCGGTTTGACACATGGAGCACATCGCACACAAAAAAGCACTCCCGCCGAGAGAGTGCTTCGCTCTCAATGCGGGGCGTTAGCTTGTACCCACCGCCGGTTCGAAACGTACAATCCCTTCCAGCTCGGGCAGTTGAGTAAAGGATGAACATCTATTCCGAGGGATATTCCAAGCGATAAAAAAGTTGGAGAATAGCGTTTCCTGAACTATACTGAAAATATCCGGTGCGAACCCTAGGCTCACATAATTTTCCTGGGAGATCCGCACCTCTTAAGTTACATAGGACTTCGGGTTCTTGGCACATATTTGTGCCTAAATTTCCACCTCCGTAGTAACAACTCGCACTTTCGGACGTTGAATCCCTTGCTGTGCAAGGGCTCATATCGTTCGCT # Right flank : GGCTTATGATCCAGGATCACAGGGCCGTAAGCGAGTCACTCCCTTTGTGGGAGTGTGATTTAATACTTGATTTTCAGATTTAACCACTACTACGTAAATGAAATAAAGACCCCTCACGGAGTCTTTATTGGAGATTAATGTTGACTTATCCTATAACATCTCAATCAATTGAACTCCCTCGGGAACAGAGCCCTTATCTACTGTAAGTTCATAGTGTTTAAAAGATCTTGACGGCTCGCTTGGATTAATTAATTTTGCCTCGATGAGATCGAACAATGCTGCAGCCGGGGCATTTCCTAGCTCGGATTCATGCTTAAACACATACAACTTCCTTGCAGACATTTTACCTCGTGAGGCGGAACGATCTTGATCAAACATCAGCTTAAGCGATTCGAAGAAGAGATCGAGATCCTTTTGAGTAAAGCCTGTTTTCTGTGCAAATTTGGCCGACACGAATCCTTCCAATCGATATAGCCCATAGGGAACCAAGTACTTCCTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCGGCATGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //