Array 1 51-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMP01000408.1 Salmonella enterica strain BCW_4957 NODE_408_length_262_cov_0.461988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 13 ............................. ATCCCCGCGCCAG Deletion [93] 74 29 89.7 32 CG.G......................... ATCCCCGCGGAGGTTGCGCAACCGGTGTTTTA 138 29 96.6 32 ...........A................. TAAAACTATAACCAACATTAATCTTTTTTAAT 199 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 26 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGAG # Right flank : CGCGCCAAAGAGGGCGACGTAAAGGCGTATCTGTG # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.74, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 292133-292465 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMP01000005.1 Salmonella enterica strain BCW_4957 NODE_5_length_321909_cov_4.38434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 292133 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 292194 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 292255 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 292316 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 292377 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 292438 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 308610-310654 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYMP01000005.1 Salmonella enterica strain BCW_4957 NODE_5_length_321909_cov_4.38434, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 308610 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 308671 29 96.6 32 ................T............ GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 308732 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 308793 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 308854 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 308915 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 308976 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 309037 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 309098 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 309159 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 309220 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 309281 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 309342 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 309403 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 309465 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 309526 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 309587 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 309648 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 309709 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 309770 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 309831 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 309892 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 309953 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 310014 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 310075 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 310136 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 310197 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 310258 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 310319 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 310381 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 310442 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 310503 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 310564 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 310625 29 96.6 0 ............T................ | A [310652] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCCTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //