Array 1 4613-4969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000028.1 Clostridioides difficile strain HC45 NODE_28_length_44814_cov_18.5443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4613 29 100.0 37 ............................. TCATAATTGACAGCGTCACCATCTATTAGCCCAAACA 4679 29 100.0 36 ............................. TTAGAATAAAAATCACCATATCTTTTAGTGTATACC 4744 29 100.0 36 ............................. TAGATGAGGAGAACAGGAAAGCAATAGAGAAAATTA 4809 29 100.0 37 ............................. ATAAATATCTCTGCAACTTGCATATTTTATTTTTATT 4875 29 100.0 37 ............................. TCTTGATAATGTACATTTATTTTAATACTTTTCTCTT 4941 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGCATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGAG # Right flank : TAATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATGAATACTGCTGCGACTATTAAATAGTTAACTTCTAAACCAATCGCCAAATCAACTATTGTAGTAACAGTAACATTTTTATAATCGCCCTTTTCTAACTTGGAAATATAACTTTTGTGATAGTTAATTTTTTCTGCAAGTTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTTAAATCACCTTTTAATTTATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTAGCTAGATAGAGAAAAAATAGAAAATTGTAGATTTTGATAAGCCTTGCAATTAAATTTATGCAAATGTAAGCACTTTTTAAAAGATAGGGGATGGTTGTAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : GTTTTATATTAACTATGTGGTATGTAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 40639-42245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000028.1 Clostridioides difficile strain HC45 NODE_28_length_44814_cov_18.5443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 40639 29 100.0 37 ............................. GAAAGAGGTTTTTCAGCAATATACTTACGACGAGAAA 40705 29 100.0 38 ............................. ACTAAAGCAGTTCCAAAAGTTCAGCCTGTTAATTTATC 40772 29 100.0 36 ............................. CTAGCAAAATTTGCTAAAAGGTACTATTATTGTAGT 40837 29 100.0 37 ............................. GATTAAATGTTGTAGTTTTTTTGGTATAATCTAACTC 40903 29 100.0 37 ............................. TATAAATACTATGATAAATATTTATGAAGCTTATAGT 40969 29 100.0 37 ............................. TAGAAATGGTTATGAAAAAGTTAAACCAAGCGAACAT 41035 29 100.0 38 ............................. AAGTGTGGACAGGAAAGAATAAATTTGTATCAAATTGA 41102 29 100.0 38 ............................. GAAAAAATTGGGGAGTTTCTTAGTGCTACACTACAAAA 41169 29 100.0 35 ............................. ACAAATTCGTGTCTGATTTCACATTTTTCAATGCG 41233 29 100.0 36 ............................. TTGGAAAAAACATAATAGCTGGGATAATAAATGGGC 41298 29 100.0 37 ............................. ACATTTACAGTTGTTTTACTGAACAAAGATGAATTAT 41364 29 100.0 36 ............................. CATGTAATTTATAATTAAATTATAACATCTATAAGG 41429 29 100.0 36 ............................. ACATCTATTAATCTATCTATTTTTTCTAATTCATTT 41494 29 100.0 37 ............................. TATTCTATAAATGTGGGAACAATAAATATATATGATG 41560 29 100.0 37 ............................. TGTTGTTAGAGATGAAGCTAAATTTGTTTCTGTATAT 41626 29 100.0 37 ............................. TTCTTAAAAATGCTGTTGTTATTTTTTCCTCGTCATT 41692 29 100.0 34 ............................. CCTTATCAAAATAGGTTCTATCAACATCCCAGAG 41755 29 100.0 36 ............................. CATCATTTCAAGATTCAAACAATAATCAAGAGAATC 41820 29 100.0 38 ............................. AACATTCGTACAGCTTTAAAGATAGCTAGAATTTTAAA 41887 29 100.0 36 ............................. GTTGAAGCTCGAAAGGTGATATTAGAGATACTTAAA 41952 29 100.0 38 ............................. TTTTGTGTTGCTGTAGCAAGTTCATTACTTTTTTGCTG 42019 29 100.0 37 ............................. GTATTAAGTGATATAGTATTTGCAATAGCTGCTTTTG 42085 29 100.0 37 ............................. GCGAGGGAAGTTTTTCAAAAGAATTGTATAGTTGAAA 42151 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 42217 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 98.9 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TTATCATGTGGTTTATAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTTGAGTTTGAGGGGGATTAATACAATGCGTGAAAGTTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGATTAGCGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTATATGTATCAAAAAAGTAAAAAGCCACTCCGGCCAGAGTGACTTTAGTTTTGAACTAAAGATTAAGTTCAAAAAGAAACACTAATTTACGAACTCCACTCTAGTCTTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGCCTATAATATTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGGTGATAAATCTAGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 3324-4274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000124.1 Clostridioides difficile strain HC45 NODE_124_length_4549_cov_9.77748, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3324 29 100.0 37 ............................. CTTAATAAGAAAGTTCTCGATTCACATAAAAAACGAG 3390 29 100.0 38 ............................. ACAGATGGCTGTCATTATGAAAATGAAAATGGAGAAAT 3457 29 100.0 36 ............................. TGAATTTGGCGAACTCGATATAAAGAAAAAAATAAA 3522 29 100.0 36 ............................. AGGTTATAAAACTATTTTAGATATTGAGTATTATGA 3587 29 100.0 37 ............................. TCAATAACTTTATCAGAAACTTGACCATCCCAATCGT 3653 29 100.0 36 ............................. AAAGATTATCAGAAGAATTAATACAGACTGAAGATG 3718 29 100.0 38 ............................. CGGAGTATTGTAATAAGCAATAAAAGCATACCTATTTG 3785 29 100.0 37 ............................. CTACTAAAATTATAAATACTATTTGATACTAAATTCT 3851 29 100.0 37 ............................. TGTTTATTATTTATAATATTTTCATTTAATTTATCTT 3917 29 100.0 37 ............................. TCCTTCAATCTTGATTAATCCTTCTTCTGTTATCCAG 3983 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 4049 29 100.0 37 ............................. AGTTTAACTTCTTTAGATTTAGCTGTTACTACTTTTA 4115 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 4181 29 100.0 36 ............................. TTTATACCAACAATTCTCTTCTCCATGCTTTTCCAT 4246 29 96.6 0 ..................T.......... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.8 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 989-168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000127.1 Clostridioides difficile strain HC45 NODE_127_length_3832_cov_11.7816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 988 29 100.0 37 ............................. AACATTTTTATATCAAAATCTAAAAAAGGAGAATTTG 922 29 100.0 36 ............................. CAGCAGCGAAACAATTTACAGCAGAACAAGCAACAA 857 29 100.0 37 ............................. TTTATAAATCTTTTAATGACTGTTTCTGATGGAACAG 791 29 100.0 37 ............................. TTTATAAATCTTTTAATGACTGTTTCTGATGGAACAG 725 29 100.0 37 ............................. GTGGATGTACCTCTTGCAATAACAAAACAAGATAAAA 659 29 100.0 37 ............................. ATACACCTAATAAAACTAGAGATTATGAAGAACTAAT 593 29 100.0 37 ............................. TTTGGCATATTAGACGATATAAATGGAAGGATACTTG 527 29 100.0 36 ............................. AGCGTTCAATTGCGCAAGTAATGTTGTTGTGTCTAT 462 29 100.0 39 ............................. ACAAGATTAATAAAAATAGTGGAGCTATAGAATTATCAA 394 29 96.6 36 ............................G CAGCTAGAACTTTCAGCAACTGTGCGAGGTGTGTCT 329 29 96.6 39 ............................G TTAGAAACCTTTCCGTCTAATAATAGTGCTAGATATTTG 261 29 96.6 36 ............................G AGTTTATGATTTTTCATTGCATATTCAATAAAAAAT 196 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================= ================== 13 29 99.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : GTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTATTTTATTATAAATAGCTTATATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3420-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000047.1 Clostridioides difficile strain HC45 NODE_47_length_32303_cov_15.6864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3419 29 100.0 36 ............................. TATGTCCAAAGATAAAAACTACGAATTTGAACAAGA 3354 29 100.0 36 ............................. AGAGCAAATAAAGAACTTAAAAGAAGCTCTAAAAAT 3289 29 100.0 37 ............................. TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC 3223 29 100.0 36 ............................. TTTTCTATTAGATGTGCATGCGGAGAATCATTTTTT 3158 29 100.0 38 ............................. TTTACAAGAGTACCTAATACAATCCTCGACAATGAAAA 3091 29 100.0 37 ............................. ACACATACTTTGTGGAATACACAGAGGAACAGGAAGA 3025 29 100.0 36 ............................. CTGCTGGTGTTGACACACCTATAAACTTTGCTAATT 2960 29 100.0 37 ............................. CTATTTTTTAAATGTATTAAAAGAAAATATCAAAACT 2894 29 100.0 37 ............................. AAATGTCCGAAATGTAATAAATGTAATAAAATTCAAA 2828 29 100.0 35 ............................. ACGGGCAAAGAAGGATTCTCAACATCAGGAACTGT 2764 29 100.0 36 ............................. TATATCAAAACTAGAAAATCAAGAGTACAAAGATAT 2699 29 100.0 37 ............................. CCAATGCATCCACGTTGCAGGTGTACGACTATACCAT 2633 29 100.0 38 ............................. TTCAATAAAATTTTAGCATAAATTTGTGATGAATTCTG 2566 29 100.0 35 ............................. ATCTTTAATACAAAGTATAACACTTTATTATTATG 2502 29 100.0 36 ............................. AAGTAAAGATGATATTGGAGATGATGAGTTGAAAAT 2437 29 100.0 36 ............................. CCTTATGACCTACCGAGCGTTGGAACTGTTACAGTT 2372 29 100.0 38 ............................. TCAATAATTAATTTGAAAAGACAATTAATTATTTCAGT 2305 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 2239 29 100.0 37 ............................. TCATCATGGCAACTCGTAGGAATATAAATAGTGTTTG 2173 29 100.0 37 ............................. GAGAAAAATTTTTAGCTCGCTGGTACATGCAAAACTT 2107 29 100.0 37 ............................. GTTGTTTAAGTTATTTCAGCACATCGGCGACAGTAAA 2041 29 100.0 37 ............................. TTTTCGGAGTAAATTCTTTTATTATTTCTTTTTCCTT 1975 29 100.0 37 ............................. TATTGTCTATATCGACCATGCTCCAATTCTTTTCAAA 1909 29 100.0 37 ............................. ACTTTTTGTTTGAAAGAAAAAGGATATTTTGCAAGAG 1843 29 100.0 37 ............................. ATATCAATAGCAGGATTATCAACATTAGGAACTGTAA 1777 29 100.0 37 ............................. TATATTAATAGAAAAGGCGAGTTTAAATATGTGATAA 1711 29 100.0 38 ............................. GGTCTTACATTGGCTATAAGGTCACTTTCTACATTTTT 1644 29 100.0 33 ............................. TTTAGTTATTTTTATATATAACAGTTCTTTCGC 1582 29 96.6 36 ............................G CTTAATTTTTTAAGTTATTTGCAAGATATAAAACTA 1517 29 96.6 38 ............................G ATCTCTGCTCTCTTTTGCAAATTGAGAATCTTTTAATA 1450 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 1386 29 96.6 38 ............................G ATATATACCATCTTTAGTTTTACTTTTCTTTTTACATG 1319 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 1251 29 96.6 37 ............................G GAAATTGTTAATGTTGTTACTACTCTTGCTGTTGCTA 1185 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 1119 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTGTTTAGAAACTT 1054 29 75.9 35 ............TA...CA....A...GA TTGTAGAATCAACAATAGCATATACTAAATCAGCA 990 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 38 29 97.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGAGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16627-17051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000056.1 Clostridioides difficile strain HC45 NODE_56_length_26886_cov_20.0154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 16627 29 96.6 37 A............................ TGCTAAAGAGTACATTGTTTCTCATGTTAGTTTCTTC 16693 29 96.6 38 A............................ TATCTATATATTTAATACATTGCATCTTCTTTTTCCAA 16760 29 100.0 36 ............................. TTTATTCTTGGTACAAATATATCTATTGTATTAGAA 16825 29 100.0 38 ............................. TTTAATTTATTTATGTACTTAATTATTGTATCAAATGA 16892 29 100.0 36 ............................. TTATTTTATCATAGTCTTTTGCTAAAGAAAGTATGT 16957 29 96.6 37 ............................G GACTTTGTAAATGCTGAGAGTGTAGATGATATAGACA 17023 29 79.3 0 ......T........T....GC.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 95.6 37 GTTTTAGATTAACTAAGTGGAATGTAAAT # Left flank : TACTTATTCTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAGTTGTTGAACCTAAAGCACTAACAGGTACTGATGACATATTAGCGAAATTATTCAATGCTGATAGACATAACATTACTATAGAAACTATAACTAAATAAGATATCACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATCATTCCTTTCAAATTATTTTACTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATCAATTATATGTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAACACTTGAAATATAAGGCATTGAGGGTATGTGATAAGTGTTATCATTTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TTAAAAATAATCAAAAAACACTTGCTTATGGTAGGTGTTTTTTTATTGAAAGGATGTGATAATAATGTAAAAATTTTACTAATATAGTATAATAATGCTATAAAATTATGTAGGGGGTAATCTTATGGGATTATTTGGAGGTAAAGAACCATGTTGCATATGTGGAGGAAAGGGTAAAAATAAAGTTTTAGAAAATGAATATCTGTGCAATAATTGCTTTGTTGATTTTACAATATTCTCTAGTGAAAGATTAAAAACAACTAGTGCAATGCAAGTATTAGCAGACCATGAGGGAATAAGAAAGTTTATAAATTTTTCTAAGAAAAATAGAGACCTATTAGAAAAATTTGTTGAGACAAATAAAATTAATAGATTCATATCAATTGATGAAAATAATAAATTTATTAAAATATCAGATATTCGTAAAGGCGGAGATATAATAGAAACCGTATATGCAACTGATGAAATTATAGAGTTTGAACTTTTAGAAGATGAAGAGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 90419-91588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000008.1 Clostridioides difficile strain HC45 NODE_8_length_95723_cov_19.0785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 90419 29 100.0 37 ............................. TTTCGAAAAAACTCATTAAAAAGTTCTGTTATTAAAA 90485 29 100.0 37 ............................. TGTTATCAAGACTTGAAGAAGGCGGGAAAATAATAAT 90551 29 100.0 37 ............................. AATTTTAAGAGGAAAATCCATTATTGCTATGTTATAA 90617 29 100.0 36 ............................. TCCTCTGCTCTTCACATTTAATAGACTTTCAAGCAA 90682 29 100.0 37 ............................. ATTTTTAAAGAATTTGCTTGGGATTTTGATAAAGATG 90748 29 100.0 37 ............................. GCTGTTACTGCTACTCTCATTTAAAGACCTTCTTTCT 90814 29 100.0 37 ............................. TATGTAAGCGGAGACAAAATAGAAGTTGATTATGTGC 90880 29 100.0 37 ............................. AAACTTTTAAAAGATTATGCTAGAAAAATTCATGTTG 90946 29 100.0 37 ............................. TTCATTGACCAAACAGTTTGCTTACATCTAAGAGAGA 91012 29 100.0 37 ............................. TAGCTTTCCTCCTAATTTTGATTATTTATTTTTTATA 91078 29 100.0 35 ............................. TAGTTTAAAGATTGCATTCTTATACCCGCTAGTTC 91142 29 100.0 37 ............................. ATATAAAAATCAAAGGTGAAAATGGGGATAATTTAGA 91208 29 100.0 36 ............................. GTACTCAATATTATTATTCAAATAACTTCACCTCTA 91273 29 100.0 61 ............................. TATTAACTATGTGGTATGTAAAGATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 91363 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 91430 29 79.3 36 A..............AG...T......GG AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 91495 29 86.2 36 A..............AG...T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 91560 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ============================================================= ================== 18 29 96.2 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : CTAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 60842-61262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000014.1 Clostridioides difficile strain HC45 NODE_14_length_64751_cov_17.4339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 60842 29 100.0 36 ............................. TTTTCTTTCATTTTTATTTTTACAGCCTCTTTTGAG 60907 29 100.0 36 ............................. AAAAAATGGGCTGATGAAATGGGCATAACAAGAGAA 60972 29 100.0 36 ............................. AACAAAATAATATTGTTTTTAACTAATTTATCTACA 61037 29 100.0 37 ............................. TTATCATATTTAAGATTTCGATTTCTACCACTCATAC 61103 29 100.0 37 ............................. TCTGTAAACTGCCTTTTCTCTATTTGTTTCAGTTACT 61169 29 100.0 36 ............................. AGCTTTTTAGCTTCGTCTACTACTTTATAAGCAAAG 61234 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTTGG # Right flank : TAAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATATTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6736-5855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZF010000092.1 Clostridioides difficile strain HC45 NODE_92_length_9225_cov_10.7179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6735 29 100.0 36 ............................. TAAACCAGAATTAAATAATTCATCTACATTATCAAC 6670 29 100.0 35 ............................. GCCTTCATGGCTATGGAATGGTTTAGAAAAACTGT 6606 29 100.0 37 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCTT 6540 29 96.6 36 ....................C........ GTTTTCCCTTCAAGCTTTGAGATAAATGGAAATATA 6475 29 100.0 35 ............................. TGCTGTCATCCATTTTAACAACCCTGCCAAACATC 6411 29 100.0 37 ............................. TCATTTACTAAAGTGGCATATTCAACCTTGTCTTCAA 6345 29 100.0 37 ............................. TCTATTCTGACACCGAGCTGTGTGCCATCCCAAATAG 6279 29 100.0 37 ............................. CTTATTTCTAATATATCAAGATAGAAAGAAACTATCA 6213 29 100.0 36 ............................. TGTTTATTGCTGATGGAGTGTTAACAATATGACTCA 6148 29 100.0 37 ............................. GAAGGTTTGACATTATCAGCATACTCGGTAACTATTT 6082 29 100.0 37 ............................. TCAGCAGCGAAACAATTTACAGCAGAACAAGCAACAA 6016 29 96.6 38 ............................G ACAAGGTTAATACAGATATTAAAGCTAAAAAGTAAAAA 5949 29 93.1 37 ...............A............T AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 5883 29 69.0 0 ......C........AAAT....AG..TA | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 96.8 37 GTTTTATATTAACTATGTGGTATGTAAAC # Left flank : TTAAATATCTAAGGTTTTATTTGACGTGCTCTTTTTTAGATGGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAGTTAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //