Array 1 38151-36412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEUG010000009.1 Xenorhabdus sp. BG5 X_BG5_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38150 29 100.0 32 ............................. GTGCTGTTAACCCTCTGATTCAACGCACTTCA 38089 29 100.0 32 ............................. GGCAGGTGGAGTTCAGAGACGACCTGAGTTTG 38028 29 96.6 33 ............................A GCAGATTGAGTTATAAACAAAATGATCCCTATA 37966 29 100.0 32 ............................. CCTGCGGCGATGGAAAACGGGCTTTATTGGTT 37905 29 100.0 32 ............................. GTGATCCGACTGGTTGACATCAATGAATATAA 37844 29 100.0 32 ............................. GACTGTCAGATTGCCCCTGAATACGACGAGCC 37783 29 100.0 32 ............................. CACCTTGGGGCCAGCCAACGAGCCATCTTTTG 37722 29 100.0 32 ............................. AGCTTGGTTTGAAGTCTTACCGTTTTTCTATT 37661 29 100.0 32 ............................. CGATATTATGGAAAGCACATTGATAATGAGGC 37600 29 100.0 32 ............................. TATATACTTAGTGACGTGATATCATAAAATTG 37539 29 100.0 32 ............................. CTCACTTGGTCGCGCAGAGAGTTAAATCAGAA 37478 29 100.0 32 ............................. AAAACCGTCGGAGTTGTGTTTGGTAAATTTTA 37417 29 100.0 32 ............................. GTATCATTGAGGACGCACGTTTCAAAACCTAT 37356 29 100.0 32 ............................. ACCATTACTTACTCGTCTTGGGTGTATATTCA 37295 29 100.0 32 ............................. GTTTTCTATTTCCTTACAAATCTGCACTATAT 37234 29 100.0 32 ............................. ACCGGGATATTCATGTTTTGGATGCCAGTAGC 37173 29 96.6 32 ............................T AATTTTCATGCTTTTTGAACTTATGCCCTGTA 37112 29 100.0 32 ............................. GAGTTCATAAAGCCAGGACATTGTTTGAAGAT 37051 29 100.0 32 ............................. AAAAAAAGTCGAAAGGAAAAAGCACCCAGCTG 36990 29 100.0 32 ............................. GCATTTCGGTGACTGAAAATTAAGGTGTGAAA 36929 29 100.0 32 ............................. ATAGATATCGCTGTAATCAAATCGAATTATGC 36868 29 100.0 33 ............................. AATTAAAGCCATTCCCTGCTCATCGTCGTGAAC 36806 29 100.0 32 ............................. TTCTTCCAACACACTACGCTTGCGAGGATTGA 36745 29 96.6 31 ............................C CCTCGCCTCCGGGATTATTTCTGAGGAACTT 36685 29 100.0 32 ............................. CCAACTGTGTGCTTTTCTGCGTAAAAGAGCGC 36624 29 100.0 32 ............................. GCTGGACGTCTGTTAATGCGCAGGACATTCGG 36563 29 100.0 32 ............................. CATGTATATGCAAATCAGGTACATAACCGTGA 36502 29 100.0 33 ............................. CAACCAATATTGAATTGTCAGTAGGGCATTTGC 36440 29 93.1 0 ...........................AC | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : AATAGCTTGCGGTTTTAACATATTTATACAGCATTACAACACGCTTTCTGGTGAAAAATGCCAATATACTCGCATCTTGTTTAGCAGTAATTACTGAAATTGTGATGGCTTACGCGCGTTTGAGTAAATATTCCAGCAGGCTTAAAAAATGATCTCACCGGATTAGCCAATACCGCTGCTCCTACTCTTCAGTTTCCGGCTGCGTACACAACAACCAGCATTCTAATGAATCTCCCCATCGTTCAATACACAATAGAATAGTTTTCATGACCTTATTTTCTTTACCATTAAATTAACGCCACTCTCATTTTGTTATTGTTGTGACGGGAATCTCATAAATTGGTAAATAAGAGTTGAGAATATGAATTAAATGCGATCTACATTACAGATGGTAAATCATAAAAATGAAAGGAAAAATTTGGCTGACTTTATAGGCTAAAAAAATGGTAGAATTTTTCGGTCCTAAAAAGATTTTATAAAACAGATGGATAAAATTAGGG # Right flank : TTACTTGGATAACAAAATCATACACTTTAGAGACTTGAAAATATAATTGGCGCAAAAAGTCACTAAAAGCACTACTGGCTTCAAATCCCGTTAAAACTATAAACAAACTTCAACAAGAAATTAGATCCCTGAAACGAAAAGCAACCTATCAAGATAAGACATTATCAGATAAGTCCACTCAGAAATTATTACAGGATAACCATAAAGAGAATCATCAAAATTTAGCTCATTATGATGCTATAGGGTTTCCATCACTAACGGTTCACATAATCCTGAATGTGATCAATATTCCATATAAGATAAAATGTTAGTGATAACATAATATAAAATAGGGTAAATTCTCCAAATCCGTTGTTAACGTAGTGGATTTAACTCATTTTTTAAGTAGCTCGCTATTTTAAAAAATATAATCACCCAGGAAAACACTTTGAACGCTAATAATGCAACAGAAATAACTTACTGGAATCGTATGGTACCAGAACTTACCGTGACCAATTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 955-6920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEUG010000005.1 Xenorhabdus sp. BG5 X_BG5_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 955 29 100.0 33 ............................. AACTTGAAGAAAGAAAAATCAGCCTTATTACAG 1017 29 100.0 32 ............................. TTGGCCGGGCAATGTTCGTCAATTGGTTAATG 1078 29 100.0 32 ............................. GTATTTAAAGAGCTGGCGGGGAATATGGTTCA 1139 29 100.0 33 ............................. GGCCCATTATGGAAGTTATTTCGATACTCCAGC 1201 29 100.0 32 ............................. CGATGAGAGCGGCGAACCGATCATCGTCATTG 1262 29 100.0 32 ............................. GCAGGATTGGGGATCGCCTATCATGCTAAGCC 1323 29 100.0 32 ............................. CGACCTTATTATCTACCGCTTGCTGATTGGCA 1384 29 96.6 32 ............................T GCCTTTCCAGCACCTATGACTTTGGTAATGGC 1445 29 100.0 32 ............................. AAATTTGGCTCAATGGCAACTCATTACCTGAT 1506 29 100.0 32 ............................. TGAACTATCACCTAACGCAATAGAATTAGTTG 1567 29 100.0 32 ............................. CGCAAAGGGCATTGAAAAGTGCTTCACGCTGA 1628 29 100.0 32 ............................. ATTCCAGAGTTGGAATGCGGATCTCTTTGGTC 1689 29 96.6 32 ............................C AGTTCTTCATTAAATAATGCGGCCAGGATATC 1750 29 100.0 32 ............................. GCTTGACATATTACCGATTCTGCTATTAATTT 1811 29 100.0 32 ............................. TTTATTGAGTATACATCTCTGATTTATTAAAT 1872 29 100.0 32 ............................. GCTGGCGAGCTCACGTTCTACTAGCCCTTTCA 1933 29 100.0 32 ............................. CTATTAGAACCACGTGTAATTGTCGCAATGCC 1994 29 100.0 32 ............................. CATGATAGCCGCCATGTTCTGCGGCGTGGAAC 2055 29 100.0 32 ............................. ATATTGCATTAATGAAAGAGCTTGGTTTGAAG 2116 29 100.0 32 ............................. TTGGGTTTTTTGCCCAATCTAAACCATAAATG 2177 29 100.0 32 ............................. ATATGGAGCGTTTTTATCAGCACCTTGAACAG 2238 29 100.0 32 ............................. GGCAAAATGCGCTGGGTGGAACAGCATTGGCG 2299 29 100.0 32 ............................. CCTGTGCATTACGAGAACAGTTCGGCCAGCCA 2360 29 96.6 32 ............................A GCAGGTGAGTATTTGGGGGAGCTTATTTTTCA 2421 29 100.0 32 ............................. ACTGTGATCCTCAAATGATAAAGCGCCTAAAA 2482 29 100.0 32 ............................. GGTTATAACCTTGGTTTGTTGATTTGTGAAGA 2543 29 100.0 32 ............................. TTTGGTGACAAGGGATCTAACACCTTGGGTCA 2604 29 100.0 32 ............................. ATTTCCAGCATTATTTTGGGTCAAAAACGTCC 2665 29 100.0 31 ............................. ATTTATTTCATTACCAAAATCACGTAATAGC 2725 29 100.0 32 ............................. TCTCTTTCTGAACTGTTGCAGGGCATCAATGA 2786 29 100.0 34 ............................. GGGAAGAGTCATTGCAACAAGTGGCAATGCGAGC 2849 29 100.0 32 ............................. TTGCTAAGAACGCGAAAGTGATGGTAGAAGTA 2910 29 100.0 32 ............................. CATCGCACTCTGCCAGATAGCCGTGTGCATCA 2971 29 100.0 32 ............................. GTGAAGGCATTGATGCCTCAATGATAGGTATC 3032 29 100.0 32 ............................. GTCAAAGACTTTACGCAATATCAGTTTTCTCA 3093 29 100.0 32 ............................. GTTCATATGAATAATCAATATACGTGTGTAGC 3154 29 100.0 32 ............................. TTATGAGCCAGAATAAACCCAATCGCCAAAGA 3215 29 100.0 32 ............................. CTCTGATACTGGCTCTGGTGCCTATCCATCAT 3276 29 100.0 32 ............................. TTATGCCATTGGCGTTAGGTCAACATCCCGCA 3337 29 100.0 32 ............................. CATCATAACAAAATCAAAATTTTATTTATTTA 3398 29 100.0 32 ............................. ACCTTATGGCGAGGAATACGGATGTTGTGGCA 3459 29 100.0 32 ............................. GACTTTCGCACCGAAATAAGACAATTCCATCG 3520 29 100.0 32 ............................. TGGTGGATATTTAGCCAAATATAGCGGTGCTG 3581 29 100.0 32 ............................. AAACGCGCCGTACAGTCTGAGAAACGCCGTCA 3642 29 100.0 32 ............................. TGTGACGTGATCCGCAATGCCGAGCTCGCGCC 3703 29 100.0 32 ............................. ATCCCATTACGCAAACAACCTTAATTAAGACT 3764 29 100.0 32 ............................. TATTTGGCGTCAAAAAGCTGGCCGATGCGTTA 3825 29 100.0 32 ............................. ATTTTCGGGTTGGAAAGAGGCCGGAATGCGAA 3886 29 100.0 32 ............................. TCATTATATTGAGGGAGTACAAAGTGGCAAAA 3947 29 100.0 32 ............................. ACATTCGGGGCTTTTTAAGATACGCCATTTAG 4008 29 100.0 32 ............................. TTGTCAGGTACAAGGTAAGTTTTCGATGGATC 4069 29 100.0 32 ............................. TTCTTTGTACATCGGCTTTTCCATATAAATCT 4130 29 100.0 32 ............................. GCCATATTTTAAGCTGATAGCGTAATCATCTG 4191 29 100.0 32 ............................. ACATCCGAGTAAAGAGATTAACGAAAAATTAA 4252 29 100.0 32 ............................. TAAATCCGTAAATTCATCATGCGCAAAAACCG 4313 29 100.0 32 ............................. GAAATACCGTTACCGAGCGATACGGTAACGGA 4374 29 100.0 32 ............................. GTCACTGGTGATAACATGGGTAATGTTTTCTG 4435 29 100.0 32 ............................. TATCAGAAAAATATTCATATTCATTCAGTTGA 4496 29 100.0 32 ............................. GTAACGATACCGATAATTAAAGCTGGCAGAAA 4557 29 100.0 33 ............................. CAGTAAACCACCGACGCCAAACAGGATAAAACA 4619 29 100.0 32 ............................. TCATTTAATGAACAGGCATATTGATTTATTTA 4680 29 100.0 32 ............................. AAAACGCGCTGAGGTTTTTTCTTCTATAAGAA 4741 29 100.0 32 ............................. CGATGGAGCCTGAATTCAAAGCTTACCAACAC 4802 29 100.0 32 ............................. ACATTTCTTTTCCTTTGTTTGTCCTGGAATGA 4863 29 100.0 33 ............................. AATCCAATCAGGCTCTATATGAGCATCCCTGTA 4925 29 100.0 32 ............................. TAATAGTTGAAAAAGATAATGGCTAAATAGTG 4986 29 100.0 32 ............................. CCCGGCGGATTGATGTGTCCATACGGCGTGCT 5047 29 100.0 32 ............................. ATCACGCCCCAGCAACAGGATTGCCTTAGCGG 5108 29 100.0 33 ............................. CCTTTCTCTTTGGCCAGTAGGGTCGCTTGTGAC 5170 29 100.0 32 ............................. ACCTGAATATTTATTTGCAGATGACCCAACAC 5231 29 100.0 32 ............................. ATAGTTCCCACTGTTACCCCCAAACTGGACGA 5292 29 100.0 33 ............................. AATGACTTCAAATAAAGACGTGCCCAGTCCCGC 5354 29 100.0 32 ............................. AATGGACTGCACCGTGCCGACGTGGAAAAACT 5415 29 100.0 32 ............................. CCCCTGACTATTACCAGTAGTTGGGGGCTTCG 5476 29 100.0 32 ............................. CACATGCACATAACGATCATTTTGCAATGTCA 5537 29 96.6 30 ............................A CCATTCGGGCTGACTGGCCCGCCGTTTTTA 5596 29 100.0 32 ............................. GACTCTTTGCAATATCATCCAACTGCGACTTA 5657 29 100.0 32 ............................. GGTGCTTGCGAGCACCCTTTGTAATATTAAGC 5718 29 100.0 32 ............................. ATTCTGGTGTTGTGAAAATATTATCAATATTA 5779 29 100.0 32 ............................. CAGACAGGATAACAGTGTTTCCAGTGAAAGCA 5840 29 100.0 32 ............................. GGTGGAGTAGGTAAAACCACAACAGTAGTAAA 5901 29 100.0 32 ............................. GAGTGAGGCAGCGCAACAATGAATATCAGCGC 5962 29 100.0 49 ............................. GCGGTTTGTAGTAACCGGGGCGTAGTGCCCCTAAACACTATTTTGATTC 6040 29 100.0 32 ............................. CGCTAAACAGGGCGGGGATGTTGGCGGTTCAG 6101 29 100.0 32 ............................. TGGTGGCTGAAGAGCACATTGTGTTTGATACG 6162 29 100.0 32 ............................. CACAACGTAACTATTTCACAATCTATTTTGTC 6223 29 100.0 32 ............................. GCGATTATTTTTTTCTGTGTTTTGCTAGAGCA 6284 29 100.0 32 ............................. GTGTGGGCGCAGCGGGCGTATTGGTCTGTTTT 6345 29 100.0 32 ............................. AGCTTAGCTACCACGCTTAATACTCAACTGTG 6406 29 100.0 32 ............................. ATCGGGTAATAAAGGTTATTTGTCGCAAATGG 6467 29 100.0 32 ............................. CATATCTAGGCAGCCAGCAATAAACCCCTCCG 6528 29 100.0 32 ............................. TACAGCAAAGGCGGCAACGAAACTGACCTGAA 6589 29 96.6 30 ............................A CCTCACAAGAGGACGGTAATGCCGTACTGG 6648 29 100.0 32 ............................. CGATTTCCAAAATAAATCTGGGACGCTTAATC 6709 29 100.0 32 ............................. AACGCCGCCGATGGCACCGCCGATCCCTTTAT 6770 29 100.0 32 ............................. GTCCTCAAGGTGTTGGTTGATAGCTGGCGTGA 6831 29 96.6 32 ............G................ CAATTCCTATCCACTCAATAATGCAGCTAAAA 6892 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================================= ================== 98 29 99.8 32 GTGTTCCCCGTAAGCACGGGGATAAACCG # Left flank : TATAGCGCATGGAAAGGATTACAACTGGCATGGGATCACACCATGATACAGTTATATCCTTCTCCGTTTAATACGTGTGACTTTTTTGTCCAATTCCCATCTTGGTTACCGTTGAATGATTGGTTACCCTCAGTGTTTCAGGCGCTTGGGGATTGTTCGATGAAACAGTGGGAATTTTTAACCCTGGATATGCCGCAATGGCTGATTGGTATTTTTGCCGCTTATCTGCTGGTGAGTATATTAGTGTTAGTGAGCCAATTTTTTCGCACTCAGGGTAGATCTTAAAAGTAAAAAATTACCCCCAAAAGGAGTCGATAAAGGCTCCTTTAATACCTTCCCTACATTCAGCTCCCTATCACAATAATAAAAAATGCGATCTGTATTGCAGATAATAAATCAGAAAAAATGGAAAAGTGAATTTTACTGATTTATAGGCTGAAAAAATGGTAGAATTTTTTCTCTTAAAAAATATTTTATAAAACAACCAGATAAAATTGGGG # Right flank : AGAATGTCAGGAAAGGTTCTATTTAACTGGCTAAATACCAATTAACAACGTCATGCACATACGAAATCTCTACTGACTTTCCGCTGTAATATTTTCTTTCAGTAATGTGTGATTCACGGCATATTTTGCCTGCCATGCTTTAGGGTTGATTAAATAATGTTGCCGGAAACGTTTAGAAAAATGACTTGGGCTGGAATAACCCACTGCGGCAGCGACCTCAATGACATTCATCCCTTTCTTCAATAAATCCTCCGCTGTGGTCATACGGACGTTTTCCAGATATTGATGGAAAGTACGGAAAACAACCGCACGGAATCCTTCTTTTAATTTCCTCTCATTCAAACCCACTGCTCTTGATAACGATTTTATTGTCCAAGGGTAATGATAATCGTTATTAATTATCTTTATCGCATTGTAAACAGCACGGCGCTGTAATCCGCTAATCACATTATATTGGCAATCATAAATTTGAGCTGTCACACAAGCGAGTATTTCTAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //