Array 1 95973-97952 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQZK01000083.1 Salmonella enterica strain PS01 Contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95973 29 96.6 32 ............................A GTACTCCGCGTGGGACAATATCGGCAAAATGG 96034 29 100.0 32 ............................. TTTTCGATATTATGCCGCTCGGCCCAATAGTC 96095 29 100.0 32 ............................. ACGACGCTCGAACTGAACGAATTGCTACCCAA 96156 29 100.0 32 ............................. GCATCCAAAATTCTTCAACAATAGTCAACATC 96217 29 100.0 32 ............................. ATTATTCGTCAATTGCCGTTGCAAATAACGGC 96278 29 100.0 32 ............................. CCCGCCGATGCACTCAAAATTAGCCGCCTGAT 96339 29 100.0 32 ............................. ACGCCCTCGTCATCCTGCATGATGTCCATCAC 96400 29 100.0 32 ............................. GAGACCACACGCACTGCGTAAAGTTTTCAGGT 96461 29 100.0 32 ............................. TTAGTCCGGTGACGTACCCCGCGTACCGCGCC 96522 29 100.0 32 ............................. TCCGTGTACCACACGAAATTGCTGACGCTGTG 96583 29 100.0 32 ............................. CATTTAATGCAAAGTAAATCGACCAATAAATA 96644 29 100.0 32 ............................. TCAACACCCTCAATAGATTTGATAGAGTCGAG 96705 29 100.0 32 ............................. GAGCGCCTGCAATCAACGTTTACCGGCTTAAA 96766 29 100.0 32 ............................. ACGAACTGTTATTCTGGCTGCTGTCACAGTCA 96827 29 100.0 32 ............................. CTGTCGTCGCCGTCACTGGGTAAAGGCTGGTG 96888 29 96.6 32 ............................C GCTTCCACGGATTTAACTGCATTCTCGGCCCC 96949 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 97010 29 100.0 32 ............................. GGCGTTTTGTCATACTCGTCCGGTACTCTGCA 97071 29 100.0 32 ............................. TATTAAAAAACCAAAAAGACAAAATGCAATTT 97132 29 100.0 32 ............................. GCAAAAAATGCCCGGATAGGGTTTCCGGCGTG 97193 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 97254 29 100.0 32 ............................. TCTGGCCCATGCAGGCTTTAATTGAGAATGCA 97315 29 96.6 32 .............T............... AATTAGAGCTGGCGCGTATAGCGCTGGCAGCG 97376 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 97437 29 100.0 32 ............................. TTCTCTACTACAAATCAGATCTGGACGCGTTT 97498 29 100.0 32 ............................. ATTCCAGCTATATGACACCGACGATCCTGCGC 97559 29 100.0 32 ............................. GGGCACATAATCCACACCCAACCCTAAACCAA 97620 29 100.0 32 ............................. CCGCCACCGTCCGTTATTTCGGTGCGCTGATA 97681 29 100.0 32 ............................. CTCTGAGTGCATTAACCACAATAATTGCTGAT 97742 29 100.0 32 ............................. ATTTTCCGGGGGCCAACTTTGACCGTTCGCGG 97803 29 100.0 32 ............................. GCTGGCCGTATGCGCCTGGAATATCTAATCAT 97864 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 97925 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 114216-115648 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQZK01000083.1 Salmonella enterica strain PS01 Contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114216 29 100.0 32 ............................. GACCTGGCTATGCAAACAACGCACGCGCGGCT 114277 29 96.6 32 ............................T GGCCGGTACATGCCAGAACGCCGGTTACGTCA 114338 29 100.0 32 ............................. CCAATATTACGGGAACTATAAACGCAACTAGC 114399 29 100.0 32 ............................. ATGAGTTGATGTGCCGCGCTGCGTCAGACACA 114460 29 100.0 32 ............................. TTGGAAGCCGCAGAGCAGGAGCGGGAAAACTG 114521 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 114582 29 100.0 32 ............................. TCGGCATCTGTGCCATCCTGCCCTCGCGGAAC 114643 29 100.0 32 ............................. GGTATGATATTTGTGAAAACAAACATGTACTC 114704 29 100.0 32 ............................. TCATTGAAGAACCAACACCGGCACTATGTCAA 114765 29 100.0 32 ............................. CGGATATTCGTCTGATTGGCGACCTGCGCCGC 114826 29 100.0 32 ............................. GGTTTCTCTCGCCTGGATATTGACAGGTGAGA 114887 29 100.0 32 ............................. GCGCTGGGCTGAGCAGACACGCTTCGGACAGA 114948 29 100.0 32 ............................. GCGGCATGGAAAGAATGAGCGCCAGTTTTAAA 115009 29 100.0 32 ............................. TCGCAGCGAGTACCGGTATCGCCAGTGCGGTA 115070 29 100.0 32 ............................. AATATGAGCGGATTAGGATATATTCGAGGCGC 115131 29 100.0 32 ............................. TGTCGGAATATGCAGGCTGATTTTTCGTCTGC 115192 29 100.0 32 ............................. GTTCCGGTAATATTGGCTTTTTTAGCTATCAA 115253 29 100.0 32 ............................. GTTCTCAACGGGTGATGTAAATCACCAGAAAG 115314 29 100.0 32 ............................. CCGCTCCATTGCTCTTTACTTATTGTCATCAC 115375 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 115436 29 100.0 32 ............................. TTATTTGTCCGCCGTACCAGGAACGTTTCGCC 115497 29 100.0 32 ............................. GAAATGGAAGATGGCGAGACCGAGGAAACCGA 115558 29 100.0 32 ............................. TTTATGGACGAGTTCTGGAAATGGTTAGCTGA 115619 29 96.6 0 ............T................ | A [115646] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAAAAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAAGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //