Array 1 22030-19023 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000137.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 22029 28 92.9 33 .............G..........T... GGGCAGACCAGCCAGTCGCCGAAGTCCTTGTCC 21968 28 92.9 33 .............G..........T... TCCCGGCCTTCCGGCGTGCCGGGCCGGTTGCCC 21907 28 85.7 33 .G...........G.......C..T... GGGCAGACCAGCCAGTCGCCGAAGTCCTTGTCC 21846 28 85.7 33 ...C.........G.......C..T... GGGCAGACCAGCCAGTCGCCGAAGTCCTTGTCC 21785 28 85.7 33 ...C.........G.......C..T... GGGCAGACCAGCCAGTCGCCGAAGTCCTTGGCC 21724 28 92.9 33 .............G..........T... CCCGATCGCCGCGCTCAAGCAGATCACCTCGGG 21663 28 92.9 33 .............G..........T... GAGGGTCAGCGGCTTCTACTTCGTCCGCTGATA 21602 28 92.9 33 .............G..........T... CCGCGACCGGTCCGGCTCCACAGGCGGCCGAGG 21541 28 92.9 33 .............G..........T... GGACCGACCGGCGGAAGAGTGCCCGCCGTGCCG 21480 28 92.9 33 .............G..........T... GTCGACGCCGTCCGGAGCGGAGAGGAACGTGCC 21419 28 92.9 29 .............G..........T... GCCGGCGACATCGTGTACGTCACGGTCAC 21362 28 92.9 33 .............G..........T... GCCGACGAAGAAGCCTTCGCCGCCGCGCCGCCG 21301 28 92.9 33 .............G..........T... GCGGGGCCTGACCCGCTCCAGGCGCCGCAACGG 21240 28 92.9 33 .............G..........T... CTCACCGGCGACGCGGCCGGGGACGTCACCGCG 21179 28 92.9 33 .............G..........T... CCTGTCGGGCGTGGCCCATGACCGCGCACTGGA 21118 28 92.9 32 .............G..........T... TACGCGGGCCAGGCGGACGGGACCCGCGTCGC 21058 28 92.9 33 .............G..........T... GACGTCCTCGACGTCGCCCAGCTCGCCGAGATC 20997 28 92.9 33 .............G..........T... CGGCAAGGACTGGTACCCGCAGGCGCAGTACGA 20936 28 100.0 33 ............................ CTCCCCGGCCGACTCCGCCTGCTCCTCGGCGAC 20875 28 100.0 33 ............................ GCCCCGTACGGAGCGCTGCTACGGCTGCGGGCC 20814 28 100.0 33 ............................ CGGCATGTGCCCCAGCACCCACCCGGCATGACC 20753 28 100.0 33 ............................ CGGCATGTGCCCCAGCACCCACCCGGCATGACC 20692 28 100.0 33 ............................ CGGCATGTGCCCCAGCACCCACCCGGCATGACC 20631 28 100.0 33 ............................ GGAGCGCCCGTATCTCGCCGCTGAGCCTGAGGG 20570 28 100.0 33 ............................ CGGCATGTGCCCCAGCACCCACCCGGCATGATC 20509 28 100.0 33 ............................ GTCGATACCGAGGGCGGCCCGGAGGCGCCCGGC 20448 28 100.0 33 ............................ CAAGATGATCAAGGTGGCGGAGACCATGCGCCG 20387 28 100.0 33 ............................ CCCTACGGCTACTCCACCCGCTGGAACCCCGAC 20326 28 100.0 30 ............................ GGTGTGGCCTTCCTCGCCCGCCGCGTCGTC 20268 28 100.0 33 ............................ CAAGATGCTCAAGGTGGCGGAGACCATGCGCCG 20207 28 100.0 33 ............................ CAAGATGCTCAAGGTGGCGGAGACCATGCGCCG 20146 28 100.0 33 ............................ CCCTACGGCTGCTCCACCCGCTGGATCCCCGGC 20085 28 100.0 43 ............................ GCGCCTCGCCCCCAATCGCCCCCAACATCGGCCTTGCCCGCGT 20014 28 100.0 33 ............................ CAGTTTGTTGCATAGGCGTTACGGAGGCTTGCG 19953 28 92.9 33 ........................T.G. GCTGCACTCCGCGCCGGTGGTGGCGAGGATGTC 19892 28 100.0 33 ............................ CAGTTTGTTGCATAGGCGTTACGGAGGCTTGCG 19831 28 96.4 33 ........................T... GCTGCACTCCGCGCCGGTGGTGGCGAGGATGTC 19770 28 100.0 33 ............................ GTGAGCCCCGATCGAATGACCACAGGCTGGCTC 19709 28 100.0 33 ............................ GTGGGCCGCGACGTCCGCGTAGCCCGTCCCCGC 19648 28 100.0 33 ............................ GCTCCGGTTCCTCGGCGGCGCGATGGCCGCGGC 19587 28 100.0 33 ............................ GTGGGCCGCGACGTCCGCGTCGCCCGTCCCCGC 19526 28 96.4 33 ...............C............ GCTCCGGCTCCTCGGCGGCGCGATGGACGCGGC 19465 28 96.4 33 ......................C..... CTGTGCCGCCGCGACGGCTGCAGCCAGGTCGTC 19404 26 92.9 91 ............--.............. GATGACCGTGCGGACCAGGCCGTCGAAGGTGGTATCGGCCCCCGCCCGGGGATGCTCCGAGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 19287 28 92.9 33 ............TG.............. GTACACCGCCCGGCGCTTTTGGCCCCGGTCGCC 19226 28 96.4 33 .............G.............. GCCGCGCCGCTCGTACGGCATCCACTCGGCCGG 19165 28 96.4 87 .............G.............. GAGCACGGCGGATCACCTCCGTCTCGCTCAGGTGTAGGCCGCGAGGATGCTTCCGATGTCGCCGCTCGATGGCGACTCGATCCGGAG 19050 28 89.3 0 .C.........G..............T. | ========== ====== ====== ====== ============================ =========================================================================================== ================== 48 28 95.8 35 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACGTGACCCCATTCCACGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CACTCCGTGCCCCCGTTGCCACCCCGCCCCCGAGGCGCTCCGTGCCCGTGTCGTTGCCCATCAGGCGGAACGCGAACAGCTGTTGGACATGAGCTGATGACTGGCACCAGGTAGTTGGCGAACAAGCTCCCTGCCCAACCTCACGGCCTATCCCGTGCCCCTCCTCGGCCGTCGGTCTCTCCCCCGACGTGCACCAGGAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGTCGTTGGCTCACACAGAGCAGCCGAGCCCCCCAGGCCCTCGTGACGCGGCCCTGAGGACCTGGCCTGATCAGCGGATCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCGCGCAGGTCAGCCACCAGTTCGGTGGTGCGGGTTTCGGTGAGGGTGCCGCCATCACCGCCGGTCGCCGTCCACTCGATGTTCCAGTGGGCGGTCACGATGACCGGGTACTCGCCCGGCCGTTCGTACCGGTGCCCGCAGTCCGGGGACATGGCCT # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29768-29435 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000137.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29767 28 100.0 33 ............................ GCGCCTCGACGTGTACGACGGGAGCCAGTGGGT 29706 28 100.0 33 ............................ CAGCACCGGCATGGCGCCGTGGGAGAGCGCCTT A [29694] 29644 28 96.4 33 ..T......................... CTCGCGGGCGTCGGGCCCACCGTGCTCTACCGG 29583 27 96.4 33 ...............-............ CGCGGTCAGCACCAGCCGGTCGGCGTCCGGTAC 29523 28 100.0 33 ............................ TCCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 29462 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : C # Right flank : CGCCACGGCGCCTAGTTGACCTGAGTCAGAGATTCGTCGGCAGTAGGTGGCGACTTATTTCGAGGATTTCGTCGGCCGTCTTCGTCCAGACGAAGGGCCGCGGGTGTTCGTTCCAGTCGGCGAGCCAGGCACGGATGTCGCGTTCGAGGGCCTGGACGGAGCGGTGGACGCCTCGCTTGAGCTTCTTCTGTGTGAGCTCGGCGAACCACCGCTTCACCAGGTTCAGCCAGGACGAACTCGTCGGTGTGAAATGCAGGTGGAAGCGGGGGTGCGCCAGCAGCCACTGCTTGATGGCCGGCGTCTTGTGGGTGACGTAGTTGTCCAGGATCAGGTGCACGTCGAGACCGGCGGGGACTTCTTTGTCGAGCTTGGTCAGGAACTTCGCGAACTCGACAGCCCGATGGCGCCGGTGCAGGGAGCCGATCACCTTGCCGGTGGCGACTTTCAGGGCAGTGAACAGGGTGGTGGTGCCGGCGCGGACGTAGTCATGGCTGCCGGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54-446 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000098.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54 29 96.6 32 ............................G ACGCGGCCGCCGTGGGCCCACACGACGGACAG 115 29 100.0 32 ............................. GCCTCCAGATCGAGGCGCCGCTCCAGGGACTC 176 29 96.6 32 ............................T CGCTCATCGTCCTGTCGATGTCGGCACAGAAC 237 29 100.0 30 ............................. CCGGGCCCCAGGGCGCGGCCCGCACCCCTG 296 29 96.6 32 ............................G AGGCCGCGGCGCTTGCGGGTCTCGCGCTCCTC 357 29 96.6 32 .............C............... GTCGGTGAGCTCCAGGTGCCAGCTGCCGGGGT 418 29 93.1 0 .............C.......G....... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : CGCACGCGCGGGGATGCTCCCAGCACAGCCGGTGCCTACCGCATGCAGGTGGAG # Right flank : CCGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGAACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCAATCTCACTGCCGACACGCGGGCGCCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAGGGGACGTCCTTGAAGGTGTGGGTTCGATGCCACTGGTAGTAGGGCTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGCGGACTCACGCGAAGAGCGCCGGCGGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4175-4630 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000098.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4175 29 93.1 32 .........A..................C CCGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 4236 29 100.0 32 ............................. CGGTAGCGGCCCCGCCGAGGGCCCAACTCAAG 4297 29 93.1 32 .............T..............C TTCACCCTGGTCAGCTCCGATCACCTGCCGAC 4358 29 96.6 32 .............G............... GGCGGGGCGAAACGGCCGGGCGGGTGCCGGGC 4419 29 96.6 32 .............G............... GTGACCGGCGCCATCGGCCTCGGCACCATCGA 4480 29 93.1 32 .............G..............C TGAACCCTGGCCGGCCCTTCCACGACGACCGG 4541 29 100.0 32 ............................. TACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 4602 29 89.7 0 ...........G...............TC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.3 32 GTCGGCCCCGCACCCGCGGGGATGCTCCG # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGACAGACAACAGACTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGACCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCGGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACTAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCCTGCGATATCGCTCATTC # Right flank : CTGTCCGAGCGGGACGCCGCGCTCAGCGTGAAGTCGGCCCCGCACCTGCGGAGGCACCCCGCCACCTGCGGCGAGGCTCGCGGGCCACGACGTGTCCTCTCCGCGCGAGCGGAGGTACCCCGTTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGACGAGGCCTCTTCGCGCCTGCGGGGATGCTTCAATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCTCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 6922-9471 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000098.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 6922 29 100.0 32 ............................. CCGTGGAGAGCCTGCTCGCACACGTCCAGGTG 6983 29 96.6 32 ............................C GCGATGCGGGCGGCCTCGATGCCGTCGCGGAT 7044 29 96.6 32 ............................C GGGTACTCGCGGTCGATCTCCGTCATGTACGC 7105 29 100.0 32 ............................. TGCGTCCGCAGCCAGCACTGCCAGGACGGCGT 7166 29 100.0 32 ............................. GCCGCGACGGAAAGGACGCCGCGACCGCGCAC 7227 29 100.0 32 ............................. CCCCAGATGCCGCCCGCCTGCCCGGCCACCAC 7288 29 96.6 32 ............................C TTGCTCCTCTGCGGCAGGGGCGGGCTGATGGC 7349 29 100.0 32 ............................. CACTCCCAGCACGCCGAGCGACTGTCGAACCG 7410 29 100.0 32 ............................. CTGGTCCCGCCGCCGGTGGGCACCTACCAGGT 7471 29 96.6 32 ............................T CCGCGGCCGCGCGGCCCGGCGGAGTGGTCGCC 7532 29 96.6 32 ............................C CTTACGGAGACAGCGAGGCAGATCACCCTTGC 7593 29 100.0 32 ............................. GGGAGGGCTTGTTGTCTGTTGTGGTGCGCGTT 7654 29 100.0 32 ............................. CCGTACGAGCGCCCGGCCCCGGCCGCCCCGGC 7715 29 100.0 32 ............................. TGCGTCCGCAGCCAGCACTGCCAGGACGGCGT 7776 29 100.0 32 ............................. GCCGCGACGGAAAGGACGCCGCGACCGCGCAC 7837 29 100.0 32 ............................. CCCCAGATGCCGCCCGCCTGCCCGGCCACCAC 7898 29 96.6 32 ............................C TTGCTCCTCTGCGGCAGGGGCGGGCTGATGGC 7959 29 96.6 32 ............................C CTTACGGAGACAGCGAGGCAGATCACCCTTGC 8020 29 100.0 32 ............................. GGGAGGGCTTGTTGTCTGTTGTGGTGCGCGTT 8081 29 100.0 32 ............................. CCGTACGAGCGCCCGGCCCCGGCCGCCCCGGC 8142 29 100.0 32 ............................. GCGTCCTGGGCCGCCTTCGGGTCGAAGATGTA 8203 29 96.6 32 ............................T GGCGCACGCGCACCTGCGCGGCGACCTGGTCC 8264 29 100.0 32 ............................. CCGACCGGAACCACAGACCAGCCTGACGCTGA 8325 29 96.6 32 ............................C ACGCACCGCGGGGCGTGCTTCCCGCCCCACGG 8386 29 96.6 32 ............................T CCCAGGTCCGGCTCGGTGGCCTGGTAGAGGAG 8447 29 100.0 32 ............................. CCCTGACCGGTGACGAGCGCCGCTGGTCCCGG 8508 29 100.0 32 ............................. ACGTTCGGGCAGGCCGCGGCAGACGCCATCGA 8569 29 93.1 32 ....C.......................C GACAGCGGGTTGGAGCTGTCGGCGCCCTTCTC 8630 29 96.6 32 ............................C GGCTGGTCCGACGTGGGCTACTCGTTCCTCGT 8691 29 100.0 32 ............................. ATGGTCCGCAGTTCGCGGTCGCGGCTGCTGTC 8752 29 96.6 32 ............................T GCCGCCGTCGTGGCGTCGCCGCGGTCGGACCC 8813 29 93.1 32 ...........G.T............... AGGCTGGTGTTCCGGCGGCCGGTCCAGGCGTC 8874 29 100.0 32 ............................. CGACCACCACGGCCCGGCCGTGCGCCTCTCCC 8935 29 96.6 32 ....C........................ ACCGCATCGGGCCAGTGGCAGCACCGCTACGT 8996 29 100.0 32 ............................. AGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 9057 29 89.7 32 ...........T.C..............C TTCCAGACGCCGAGCCACGCGTCGCCCCAGGC 9118 29 100.0 32 ............................. ACCGCATCGGGCCAGTGGCAGCACCGCTACGT 9179 28 96.6 32 ....................-........ AGCTGATGGACGCCCTTCAAGGGCCGCTCGCC 9239 29 86.2 32 ...........T.C.......C......C TTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 9300 29 100.0 29 ............................. GGACCGGGGTGCTTCTGGGGGTACCGCGT 9358 29 93.1 56 .............C..............C CAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 9443 29 82.8 0 .............C......C.A..G.T. | ========== ====== ====== ====== ============================= ======================================================== ================== 42 29 97.4 33 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CTCGGCCTCCCGCTGCTCGGCTGTCGCGATCGCCTTGTCGATTCGGGCCAGCCACATCGCGTGCCACGTCCGCAGCACATGCAGGCGCGGCAGGTCGGCGGGCAGATCGGACATGCGTTCGAGTCTAGGTATGTTGGTGTCGGCGGCGTGCGGCACCCCCCTGCTTGACTTCGAAACGCCGCCTTCGCCTTCCCCTCCCCTATCAATCCGCCCGGCCTGGTACCGGGGCCGCATGGCCTGCATGGAGATTTCGCTCGCGACGGTCCTCGCCCTGGCACTGTGCGGCTGGCGGGCCCACTGGGTACTGGGCGCACGGCAGTTGCCCACCAAGGCACATGCGTGGGTGTGGACCGAGGACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCGGACCCCGCCGCCTCTGGGTCGGGGCCCTCGCCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCATCCTCGCGGTAACCTCGCAGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTACGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCGGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGTGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCATGCCGAGGTCCACGGCCGTGGCGGTGTCGAGTCGCCCGGCGCACCACACGCACTCGGTGCCCCGGAGCTGCCGCTCGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 12510-13820 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000098.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold19_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12510 29 100.0 32 ............................. CCGTGCGCGGCGGCGGCGTCCCGCAGCGTGTG 12571 29 96.6 32 ............................C TCATCGCCCTCATGCCGTGGCTGTCCCGCGCA 12632 29 100.0 32 ............................. ACCGAGCTCCTCGCCGAGTCGCCGCTCGGCCC 12693 29 96.6 33 ............................A GGGCGAGGAGGCGACGATCTGGGAGGAGGTCTG 12755 29 96.6 32 ............................C CCGTGCAGGCGCAGGCCCATCCCCCACAGGGT 12816 29 96.6 32 ............................C GACTCGGAGCGGAGTTTCGACGTGAAGCGGCT 12877 29 96.6 32 ............................C TGCCTGCTGCTCTGCCACTGCGGGGCGGTACG 12938 29 96.6 32 ............................C ACGCGGTACGCGAGGGTCACCCGGCGGGTGAA 12999 29 100.0 32 ............................. CCGCCGGCGGTCGGCCCCGCACCCGCGGGGAT 13060 29 96.6 32 ............................A CCTGTACGGGGTGGGCGCCTACATGGCACCGG 13121 29 100.0 32 ............................. GAGATGGCCGACGGTGCGGCCGGCATGCTCGG 13182 29 100.0 32 ............................. TGCCAGAGGTGCTCGTGCTCGGGATGGCGTCG 13243 29 93.1 32 ........................T...C GAGTCGGGCTTCGTGGCCGCGACGATGAACGG 13304 29 89.7 32 .............C..........T...C ACGTACCGAGACGAGAGCGAGGAGCCGATCGA 13365 29 89.7 32 .............C..........T...C CTGGTCGTCGCGCCCGCCGCCCCCCGCACCCC 13426 29 89.7 32 ............AC..........T.... GACGTGGGGATCACCCCGCCCGGTGGCTCCGT 13487 29 93.1 32 .............C..........T.... AAGCAAGCCGCGGGCGTTCCCTGGCGTCAGCG 13548 29 93.1 32 .............C..............C GCTTCTTCCTCGGCCGCCCGGCCGACTCCGCC 13609 29 96.6 32 .............C............... CAGCATGACGCGAGTCCTGTTCTCACACCGGG 13670 29 96.6 32 .............C............... GAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 13731 29 96.6 32 .............C............... GACGTGGACGCTATCCGGCAGCAGCGGCAGCA 13792 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 96.0 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACGGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGGGTGGACCGAGAATGGCGTATTCGGGCTGTCCGGCCGCGCCCGCGTGGACCTCCGCCGCCTCTGGGCCGGCGCCCTCGACGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CTGGCGGTGACCTCGTGAGCGCCCGAGGCCGGTCGGCCCC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13749-13476 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000081.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold1_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13748 29 93.1 32 .............GT.............. CCGAGCGGCGCCCTGCAGAACCCGCTCTTCTG 13687 29 100.0 32 ............................. ATCTACGGGATCGCGGCCGAACGGGACCGGAC 13626 29 100.0 32 ............................. TGGGTGGCGTCGATCTCCATGAGCACTTCGGC 13565 29 96.6 32 .........................T... GAGGCCGCTCCGGTCGTCACGAACATCATCGA 13504 29 86.2 0 ..............G......CAA..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : CAAGACCACACCGCGCCGACCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGACCGTGGATGTCCGTGTGGCAGGCCCGACCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGGTGCGTGGGGGGGCCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTTTGGGGCGAATGTCGCTATCGGCGAAGCTTGCGGAAACTGGGGCAGGGGCGCCGTAAACCTGCCGGCCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 305-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000093.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold1_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 304 29 100.0 32 ............................. GTGGCCAGTTTGATCTGTGCGCTTGCTCGGAG 243 29 100.0 32 ............................. ACGGTCAACGGCTACGCCGCCGACTGGAAACA 182 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 121 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCTGCGCCCGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGACGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGAGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTATTGGGGATGGACGCGGTGGGTGCGGGGGTGGGGGCTTATGAGCGGGTACGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAGCCCGCAGGTCGGAGAGA # Right flank : CTGCTCTGTGATCACGGCGAGCAGCAGGGTCAAGCGGGTGCCCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000141.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 33 ............................ CGTGCACGCGTTCGTCCGGCTCACCTGGTGGCA 78 28 100.0 33 ............................ GCCCGCCTCCGGGCCTCCCACGCTCTCCCTGGC 139 28 100.0 33 ............................ GCTGGCTTCAGGCGCCCTCGTTGGGGCGGCTGG 200 28 100.0 33 ............................ CTGGCCGGGTGTGGTGCGGTGATGGGGGATGGG 261 22 78.6 0 ......................------ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : CGTACGTGGGGAGCCGG # Right flank : | # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-1006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000133.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold29_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3 28 100.0 33 ............................ GTACGCCGGGCTGTCCTCGGTGTCCATCTGGGG 64 28 100.0 33 ............................ CGCGGAGAACATGGGCTGCACCCGCACCATGAA 125 28 100.0 33 ............................ GGGCTGGGACCGTAAGGATTCCCGCCTCGCGGA 186 28 100.0 33 ............................ GGCCGAGCACATCCCGCCCCTCTCCCCGAGCGG 247 28 100.0 33 ............................ CGGGGGAGAGGTGGACGGGCATATGCCGCTCGT 308 28 100.0 33 ............................ CTGTGCGGACAGCACGTCCAGCTCCTCGCCCGC 369 28 100.0 33 ............................ CTGCCGCACATCCGGACACTGGTCGCCGAGGGC 430 28 96.4 33 ..............C............. CTCTTGACGCCCGGCTTGGCGGGGCCGGCCAGT 491 28 96.4 33 ......................C..... GAAGGGAAAGAAGTTTCCCGACCCTGACCCCAA 552 28 100.0 34 ............................ GGCCACGTAGGCGGCCCTCGGCGCGGGCGTCGGC 614 28 100.0 34 ............................ GGACCTGGTGCCCGACCTCGTCTCGGCCCTGGAG 676 28 96.4 33 ......................C..... CAGCCACTACAACTACCGGGACACCGCCGCCTT 737 28 92.9 33 ...................A...G.... TCTTCGCGGGAAACGGGTGCGGGCGAACTGCCC 798 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 859 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 920 27 85.7 32 .....T.T........-......G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 979 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ================================== ================== 17 28 97.3 33 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : GGG # Right flank : CCTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAGCTTTGGGTGATCGAGCGGCCGACTGCCCGAAAGTCGACCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGGGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-397 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000140.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 100.0 32 ............................. CCACGTCGGTGCCCTGCACCTTGGAGATGTAC 63 29 100.0 32 ............................. ATGCGCCTCGCCCGGAGGTTGCCGGCGGAAGG 124 29 100.0 32 ............................. ACCGGCGTGCCTGCTGCCCGATGACCCGGTAG 185 29 96.6 32 ............................T CGGCGGCAGGCACCGTCAGCGCGACGGGCAGC 246 29 100.0 32 ............................. CAGGCCTCGACGCGAAGGCCACGCAGAAGGCG 307 29 96.6 33 ............................C CCGCGTGCCGAGAGCAGGTCCTGTCCATCCGGA 369 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 GGAGAACCCCCGCAGGCGCGGGGCCGACG # Left flank : GG # Right flank : TGCTGACCTGCGGCGTTATCTGAGCGGTCTGCCGTTCTCATTTAGTTGCATTGCGGTGTACCGATCAGTTCCGGCTCTGTCGATCTTGCGTATGTGCTGGCCTTCGAGCGGAGAGGATAAGCCCTTCGTAGTCGACGGGCCGCCAGCGGTCACGGCCGGCAGTACGGACGGCCCAGCCTTGTTCATTGGCGGCGGGTTCGACAAGGACGGCTTGACCGTCGCCGATGCGGTTGGTGAGGAGTTCCCAGAGACGGTCGCGGATTCGCCGGCTGGGGTTGCCGACGAAGACTCCAGCGTTGACTTCGACCATCCAGCGGGTGAGGTGGCCGCGCAGGCCTTCTGGAGCCGCGATCAGGATGATGACGGTCATGGCTGTTGTCCCGGGGGCGGGGCTTGGTCTTCGAACTCTGGTCCGACGATGGCGATGTGCTGTTCCCCGAGCGCAGCTGGCGAGAGGTCATGGTGTGAGCGGGTGGCCGGATGAGTGTCTTGTGCGGACC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAGAACCCCCGCAGGCGCGGGGCCGACG # Alternate repeat : GGAGAACCCCCGCAGGCGCGGGGCCGACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 10712-13429 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLU01000140.1 Streptomyces albidoflavus strain FXJ8.008 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 10712 28 100.0 33 ............................ GGTCGGTCTGGCGAAGGCGAAGATCGGCAAGAC 10773 28 100.0 33 ............................ CCGGTCCGTACCGACGTCGCAGACGTACGCGTA 10834 28 100.0 33 ............................ GATGCCCGCACTCGCAGCGCTCATGATCGCGCT 10895 28 100.0 33 ............................ GCCGGTCTCCGCGGTGGACCCACCGGACCACCG 10956 28 100.0 33 ............................ GGTACGTGATGCACCTTGCCGCAGCCATGAAGG 11017 28 100.0 33 ............................ GGCCGAGGCCGGGAGGGCGACCGAGCCGCCGTG 11078 28 96.4 33 ....................A....... CGCCCGCCGTCCCGCCGCAGATCCCCCCAGCGA 11139 28 96.4 33 .........................A.. GCCGGTCTCCGCGGTGGACCCCCCGGACCACCG 11200 28 92.9 33 .C.......................G.. GCGCGATGAGATGTACGAGCGTCTCGCAGCGAT 11261 28 100.0 32 ............................ TGGCGTCGAGGCGCGTCATCTCCGCCGCCGTG 11321 28 100.0 33 ............................ CGCCCGCCGGCCCGCAGCAGAGCACCACAGCGA 11382 28 100.0 33 ............................ GCGCGAGGAGATGTACGAGCGTCTCGCAGCGAT 11443 28 96.4 32 ..............G............. TGGCGTCGAGGCGCGTCAGCTCCGCCGCCGTG 11503 28 100.0 33 ............................ CGCCGGCCGTCCCGCAGCAGATCACCACAGCGA 11564 28 100.0 41 ............................ GGTCAGCGGGTCAGCGGGTCAGCGGGTCACGTAGCGGACCT 11633 28 100.0 33 ............................ GCGGTGTACGCCGCCGCCCTGGTCACCGAGGCC 11694 28 100.0 33 ............................ GCCGTACTTCGTGGCCAGCGCTCCGACGACGTA 11755 28 100.0 33 ............................ GCACCGCGCCGTGCGGGACTGGCTGGGCTGGCA 11816 28 100.0 33 ............................ CAGCGCGCACGTCACCTTCGCCGCCGACGGCCC 11877 28 100.0 33 ............................ CGCCAGGTCGCCCACCAGCGGGAGGCCCCACGC 11938 28 96.4 33 .....................C...... CTGGCCCAGCGTGTTCGCGCCCGGCTCGGCCGC 11999 28 100.0 33 ............................ CGCCAGGTCGCCCACCAGCGGGAGGCCCCACGC 12060 28 96.4 33 .....................C...... CTGGCCCAGCGTGTTCGCGCCCGGCTCGGCCGC 12121 28 100.0 33 ............................ GCCCTCGACGTCCGCCACGTACCCGGCCGGGAA 12182 28 100.0 33 ............................ CGCCAGGTCGACCACCAGCGGGAGGACCCACGC 12243 28 100.0 33 ............................ CTGGCCCAGCGTGTTCGCGCCCGGCTCGGCCGC 12304 28 100.0 33 ............................ GACCGCGACGTCCGCGACGTACCCGGCCGGGAA 12365 28 100.0 33 ............................ GACCGCGACGTCCGCGACGTACCCGGCCGGGAA 12426 28 100.0 33 ............................ CGCCAGGTCGCCCACCAGCGGGAGGCCCCACGC 12487 28 96.4 33 ..........................T. GGTGGTACCACCGTGCGGGTGGCATGGGTGATC 12548 28 96.4 33 ..........................T. GTCCAGACATGCAGACCATGTACGTGCGCTTGG 12609 28 96.4 33 ..........................T. GATGCTCGCGGCCCGGATGCCGGGGCCCTCCAT 12670 28 100.0 33 ............................ GTACGCCGCCCTCCTCTACGGCACCTTCGAGCG 12731 28 96.4 33 ...........G................ CCTGGCCGGCCAGGGCGCCCGCGCCACGATGCT 12792 28 96.4 33 ......G..................... CGGCCCGCGGCTGGCGGGGAGGGGGGGGTGAGC 12853 28 100.0 33 ............................ GGGCGAGCGGCCGGAGGGGAGTGGGGCGTGAGC 12914 28 100.0 33 ............................ GGGCGAGCGGCCGGAGGGGAGTGGGGCGTGAGC 12975 28 100.0 33 ............................ GGGCGAGCGGCCGGAGGGGAGTGGGGCGTGAGC 13036 28 100.0 33 ............................ GGGCGAGCGGCCGGAGGGGAGTGGGGGGTGAGC 13097 28 100.0 33 ............................ AGGCATTGCCCAGTTCATTGACGCCACGTGGGC 13158 28 100.0 33 ............................ GGACCGCGCCGCACCGATGCTCCAGGGCAGCTA 13219 28 100.0 33 ............................ CACGGCGGCGGTGCAGGCGACGACGACCAGGGG 13280 28 100.0 33 ............................ CCCGCCCGAGTGCAACACCCTCAGTGACGAGGA 13341 28 100.0 33 ............................ GCCCTCGCCGCCCGGCCCGTCGTGGTCGTCGCC 13402 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 45 28 99.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CTGGAATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGACACCTCATCCAGCAGGCCACGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCTACGGCAGGCGCCCGCTCTACGCGGTCACGCACGCCGCGCTCCCTGCCACTCGCTGCCCGGCCCATGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGCTAACCTCCCTGGTCAGCAAGT # Right flank : CGCTCCTCGGCGCGGCCGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //