Array 1 788209-787692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQN010000013.1 Cronobacter sakazakii strain HA18012 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 788208 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 788147 29 100.0 32 ............................. CAGGCAAACGAAGTACGCCTGCGCCTTGACGA 788086 29 100.0 32 ............................. AATTAATTGATAAAGCTGGGTTGCCGGATGAT 788025 29 100.0 32 ............................. GTGTTGCGGTGAGATGGCCGGAACCAACGCAT 787964 29 100.0 32 ............................. CCTGGCTTAGTTGCGATTCCGCAGTTGCAGAT 787903 29 100.0 32 ............................. TGCCCGCCAGATCCGCAAAGGCATCCATAGTC 787842 29 100.0 32 ............................. ACCTGATTGCGGACGGGCTTAGCGGTGAGGCG 787781 29 100.0 31 ............................. ATATTCAGGCTGGCGGCACTTCTTCTCCGAC 787721 29 93.1 0 .....................G......A | A [787720] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGTGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGGATCCGGTTTTGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTACATCAATAACGTGGCTTAATGAATATGTGCAGGATATATTATTTTATATGTCCTTATCTAATCATTAACTCTGAGCTGGGAAATAAAGATAACGGTAATAATAAAAAATGAAAGGTATTGTATCTGTTCTATTTTTGCTAGTTATAATGAAATTCTTTCTATTGCTAACTTTTATGTTTGTTAATTTAAATTAAATGTTAATTACAGCGTTTATTAAGTTAAACATGTAGAATTTATACTTTCTTCAATTAATAGGAATATATAAATGACATGGGATAAGTATGCAGCAATACGTCATGCACATGATCGGGCCTATAGCAATAGCCATCATAAGTGTGAGTTATTTGTCAAAGAAGCTATTATTGCTGGTGGGGTGGATATACATCCAACACCTTCTGCAAAAGATATGGGTAACGCATTGATTCAATCTGGTTTTTATGAAGTTTATGGTGAGCCCGTAGCGGGTGACGTTGCTGTTATTAACGCGATCCCCGGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 816952-814481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAANQN010000013.1 Cronobacter sakazakii strain HA18012 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 816951 29 100.0 32 ............................. TTATCGACGTGGCACGTCAATCAACTGATTTG 816890 29 100.0 32 ............................. AGCACTGGCATTAGCCTCGTCGGGGTTTTCCA 816829 29 100.0 32 ............................. TCCAGCCATGCTGCGCCGCTACGTTCTCCATT 816768 29 100.0 32 ............................. CCATAATGCTGCTCAGGTCATCCAGCACTCCG 816707 29 100.0 32 ............................. GCCCACGCCTCTAAAGTGGCGGCGCTGGGGTG 816646 29 96.6 32 .............A............... TACACGGGCGCTTAGCTCTGTTATTGCTGATA 816585 29 100.0 32 ............................. CCAGCCACCTTACATCCCGTTACTTCTGCCGA 816524 29 100.0 32 ............................. ACGTTTTGCCTTTTCCTCTTCATAGCGCTGCC 816463 29 100.0 33 ............................. GCGGTCGCGCTGCGCCATATAGTCGCCGCCTAC 816401 29 100.0 32 ............................. TTCACGCCGGCTGATAACGCAAACCGGGCGCG 816340 29 100.0 32 ............................. ATCATTGACAAACTCTTGCTGCTCTCCGATAA 816279 29 100.0 32 ............................. CGCGCGAGGCCGATCCGGGTGCTTGGCTGCAA 816218 29 100.0 32 ............................. CTGGTCGTGTGCTGATCGTTGGCGCTTTCGGA 816157 29 100.0 32 ............................. GTTTCTTTTGCGTTGTCCGTAAGAACTGAATA 816096 29 93.1 32 .C..........T................ CATCCCATACACCGCAGATTTACCAGAAGTGT 816035 29 93.1 32 .C..........T................ AATACCGCCGTCTCTTCGTCGAGAGCAGCAGC 815974 29 96.6 32 .C........................... ACAGTATCTCCCTCTTTTTTTACGTATCGTTT 815913 29 96.6 32 .C........................... GTCTCAATATAATAACGGTGAACACAACTGCA 815852 29 96.6 32 .C........................... CAGACCGCGCCCTCTTCGGTGTCGTGGATAGA 815791 29 96.6 32 .C........................... CGGTGATAACTCCGAGGCGCAGCCTCTGCCAC 815730 29 100.0 32 ............................. CGTCTTGCTGTGCCTGTTCACGTTGAGCCTGT 815669 29 100.0 32 ............................. CAGATAGGTCGGGTTAGAGCTACTGATGCTCT 815608 29 100.0 32 ............................. TTTGCGATTGTACTCACCTGCAGGCATCCACT 815547 29 96.6 32 .........C................... TGGAAGAATTGGTGAAAGAAGCGCAGGCTGCC 815486 29 100.0 32 ............................. AGTACGAGAAGAAACACTATCCCATCGAGTCG 815425 29 100.0 33 ............................. CGAGCGAGGTTATCCGCTATTTAACCGCCCCGC 815363 29 100.0 32 ............................. CGGGCTAACACTTCATATCCCGCGTCCGCAAA 815302 29 100.0 32 ............................. GGCTGCGCAGCTGCAAGACTGGCTGGAATTAC 815241 29 100.0 32 ............................. CCCCTCTGACTCAAACTGCTTTTTGACGTACT 815180 29 100.0 32 ............................. GTTCTGGAAAATAGCCGGGCCGACTGCTGGCT 815119 29 96.6 32 .C........................... GGATATTTTTAAATCATCCGGCAACCCGGCTT 815058 29 89.7 32 .C...........A......T........ GGTGGTTTAAATCACTGTTACAGGTAGTCGGC 814997 29 93.1 32 .C.C......................... CGGTAAAAATCATCAAATGTCAGTTCAGTGGG 814936 29 100.0 32 ............................. ACGATAAGGTGGATGGTTTTGCTCCGGCTAAA 814875 29 100.0 32 ............................. CGCTTTTTTTATGGAATAGGCAATGACGGGGC 814814 29 96.6 32 ............T................ TGCAGCCTGAAAGTGCCGAGTTTGGTCTGCGC 814753 29 93.1 32 .C..........T................ ATAATTTCGGGGTGAGCGCCGGTCATCCAGAG 814692 29 93.1 32 .C..........T................ GTGGTCGCGGCGTTGCTGGCAGACACGGAGTA 814631 29 93.1 32 .C..........T................ CCCATCAACATCGGCGGCAGTGGCCTGCAGGT 814570 29 96.6 32 ............T................ GCAATAATATTGTGCCCCGCTGCGAACACCGC 814509 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 41 29 97.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAACTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCAAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGACCTGGCGAACACACTGCAAAATCTCCGTTTCCCACCAGCCGTAATAAACCGCCCAGGCTCTTCGCGTCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //