Array 1 191356-189692 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHS01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45958 N45958_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 191355 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 191294 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 191233 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 191172 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 191105 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 191044 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 190983 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 190922 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 190861 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 190800 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 190739 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 190678 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 190617 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 190556 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 190495 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 190434 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 190373 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 190312 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 190251 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 190148 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 190087 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 190026 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 189965 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 189904 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 189843 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 189782 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 189721 29 96.6 0 A............................ | A [189694] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208740-207614 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHS01000001.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45958 N45958_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208739 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 208678 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 208617 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 208556 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 208495 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 208434 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 208373 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 208312 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 208251 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 208190 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 208129 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 208068 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 208007 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 207946 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 207885 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 207824 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 207763 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 207702 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 207641 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //