Array 1 87343-90116 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMA01000026.1 Erwinia sp. OLTSP20 NODE_2_length_170123_cov_16.1913_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87343 29 100.0 32 ............................. CAGTGCCGGGAGGTTGGACGGGAGCCACGGGA 87404 29 96.6 32 ............................C AGTGCCGGGAGGTTGGACGGGAGCCACGGGAC 87465 29 100.0 32 ............................. GAAATTACCATGAGCACAGTAACCGCTGAAAC 87526 29 100.0 32 ............................. CAAAGGGGGGATTTGAAGGGAAAGGGGCAGAA 87587 29 100.0 32 ............................. ATGAACAAGCTACGTTATTTCCGGAGAAAGGT 87648 29 100.0 32 ............................. AATGACCATGCATCCACTGAACTGCATACATA 87709 29 100.0 32 ............................. GCGCGGAACGCTGTTACGAAACGGCAGCGTGG 87770 29 100.0 32 ............................. GTTTTATCCAACGAGGTAAATTTACTGAATAA 87831 29 100.0 32 ............................. CCAATCGAAGAACATTTACACCATCCATGTAT 87892 29 100.0 32 ............................. CTGTATTCAGAGTCGGATCTGGTTCACTTCGC 87953 29 100.0 32 ............................. ATTTTAGAACCCTTTGTGTACCCGGGAACTTG 88014 29 100.0 32 ............................. GGGATGCTGCGCAAGATTGAGGCGCTGCTGGC 88075 29 100.0 32 ............................. GTTATTTTCGAGTTTACTGATAGCGAGGCTGA 88136 29 100.0 32 ............................. GCGAGAACGAGGTGATCGCCGCCCCGCGCGGC 88197 29 100.0 32 ............................. GTGTCCTGACGCCTGAACATTTAATCAAACCC 88258 29 100.0 32 ............................. CGCCCGGCACGGGCTTTTACCATGCCGCAGAC 88319 29 100.0 32 ............................. CCACGATTACTTTTGACTATGAGCATAAATTA 88380 29 100.0 32 ............................. CAACGCCGGTTTTCACGTCACGATTAATCAGC 88441 29 100.0 32 ............................. ACTGTGGCATATATTTTGATGCCGCAGCGACC 88502 29 96.6 32 ............................T TGCACTTCCGCCAGGCGTGTCTGCACAATATC 88563 29 100.0 32 ............................. TCGATGCGGCGATGGCTTACATGAAAAACTCG 88624 29 100.0 32 ............................. GTGGAAATTGAAAAATGACAACTAAACGCGGC 88685 29 100.0 32 ............................. ATTTTTGCTGATGATTTGCACACTCAATATCT 88746 29 100.0 32 ............................. CGGCCTGCGTCAATGTGCTGGGCGTAAGGGGT 88807 29 100.0 32 ............................. TATTAACTATGGAATATGCAAAAACACGCAAA 88868 29 100.0 32 ............................. GCACGATCAACACCGTTAAATCCATTGATGAA 88929 29 100.0 32 ............................. CTACACCATGTTATCAAGTCTGCAGTAGGTGC 88990 29 100.0 32 ............................. ATAATCGGCTAACCAAAATTAATTCAAGGGCT 89051 29 100.0 32 ............................. CGGCTTGGAGATGACAAATGAACAGCAAACCG 89112 29 100.0 32 ............................. AAAACCACAGTAGACGAACGTACCCCACTCCG 89173 29 100.0 32 ............................. TTAACCCACTGATTAAAATGCAAGAAGTAGGC 89234 29 100.0 32 ............................. CGTGAACTCGTGATTGTACTTTGACAGCGCTG 89295 29 100.0 32 ............................. TATCTCGCTCAGCCAGCAAAACCACAGTAGAC 89356 29 100.0 32 ............................. AAAGCTGTACAGGCCAACTGAGCAGCAGAATG 89417 29 100.0 32 ............................. ACCCGAATAAGCTGTTTCCGGGAACAACGTGG 89478 29 100.0 32 ............................. GGCTGGGTATGGATTTAAAGAGCGCGCCTCCT 89539 29 100.0 32 ............................. CTGTTTACCGAGCAGCACCATGGTGCGCACGT 89600 29 100.0 32 ............................. GTTGTGCCTGTGCCGGTAACTGTTGCCGACTG 89661 29 100.0 32 ............................. CTACGTCAGAGATGATGGGCAACTGATAGCCA 89722 29 100.0 32 ............................. AAAATAATCGGCTATTTTTTCTCCGGCAGCCC 89783 29 100.0 32 ............................. GTGTAGACCTATTTGCAGCAATATTCGCTCTT 89844 29 96.6 32 ............................T ACTTCCGTTTTTTCGTCCTCATTTGAGGATAC 89905 29 100.0 32 ............................. CTTCATTCTGTGTTGCTGAACACTCATAGAGT 89966 29 100.0 32 ............................. CCCGCAAAACAGTGCGTTTTGTCGGTAACTAT 90027 29 79.3 32 .....T....TC....C..AA........ AAAAAATCCACTAAATCTTTTCTCAACTTTAC 90088 29 82.8 0 .C.C.......G.A.A............. | ========== ====== ====== ====== ============================= ================================ ================== 46 29 99.0 32 GTGTTCCCCACATGCGTGGGGATAAACCG # Left flank : CTTATAGAAGACGTGCTTGCTGCCGGTGGTATTTCGCCGCCGCCGCCGCCCGCCGATATTCAACCGGTAGCCATTCCCGAACCGTTACCTTTTGGCGATAGTGGCCACCGGAGCTAATCAATATGAGCATGGTAACCGTTGTCACCGAAAATGTACCGCCGCGTTTACGTGGCCGTCTTGCTATCTGGCTTCTGGAGGTCCGGGCGGGAGTGTATGTGGGTGATTTATCGCGGCGAACCCGGGAAATGATATGGCAACAGATAACTCAGTTAGCCGAAAGCGGTAACGTTGTTATGGTCTGGGCGACAAATAATGAGTCGGGATTTGATTTTCAGACGCTGGGTGAAAACCGTCGCCTGCCGGTGGACATGGATGGATTGCGATTAGTCTCTTTTCACCCTGTTAATTATCAATGAGTTAGCGCTCTTTAACAAACTGAAAAAATCGGTAGAATAGCAGGGTGATGTAAAACTCTTTATATTCAATGGTATAAGCTAAGA # Right flank : GTTGGATAATCACCTGCCGTGGTGGTGATGAAAGGCATGTCCTGGTAACGAGGACATAAACCGCTAACTGATTTTGAAAAATAGCCGCGCTGAGGTTGTTGCCTGACTTGTGGCGATCAATCAGGGCGGAAATATACTGCTGATAACCATGACGCTGCAATGACGAAATAATCTGTTGTCAGAGGACGTCAGGGAAAATAGCGTATTGTGTTTGAGCTTGCGAAAAAACACCTGGTGATATTATCGCGGTGTTCGTCTGGCAATATGGCCGGGCAATTAAATCTATTTCCGGTCAGCAGTGATTTTATTGTCCGGGTGGCGTCTGAGCGGTTTTCCCTGGGGTTGGCTGTTTGAGTACTTTGTCACAAGGTCAGTTTTTTCTGCCTGCATAACCGGGGATGATGGTAACGAGTTAACGTTCATTCGTAAGCTGTACTTAAGTGTTGTGATGACTGTGCAGTAGTACTGGTGTTGACTTTTTAATGCATAAGAATTAACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95789-96793 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOMA01000026.1 Erwinia sp. OLTSP20 NODE_2_length_170123_cov_16.1913_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95789 29 100.0 32 ............................. AGATAGTTTCAGAGTTGGCAAAGCTTGATACT 95850 29 100.0 32 ............................. CACAGGCTGAGTTTACCAGAGCGGCGAATATG 95911 29 100.0 32 ............................. GATGGGCCGCACTTTCAGTTGCCATTTGCGCC 95972 29 100.0 32 ............................. ACCGCCGCCAGGGCGTTCTACACCCGTCACGA 96033 29 100.0 32 ............................. CCCGTCGCCTGCGCCTTGATAACCACGTTCAT 96094 29 100.0 32 ............................. TTACTTAACAGGCTCTTTAACAATATGGATAT 96155 29 100.0 32 ............................. CCCGCAACGCTATGCCTGTTATCGATCCGATG 96216 29 100.0 32 ............................. GACAGGCTGCGCAACACTCCAGGCTTGCGACA 96277 29 100.0 32 ............................. CGCTTTTGCCAGTTTGTTTACCAACAATCAGT 96338 29 100.0 32 ............................. ACAATAAAAATCCTTCCCGTACCAATAGGAAG 96399 29 100.0 32 ............................. TTAGGTGTCAGGCCAGGCGGGGGATCGCGATA 96460 29 100.0 32 ............................. GTAGTTGGCAATGCGCCACCAGAACATAAAGC 96521 29 96.6 32 ...................C......... CAACATTTCGTTGTATTTTTCATAGGCTTTTG 96582 29 100.0 32 ............................. ACAATATTGGCCTCACTGAGTTTGAGATGTCC 96643 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 96704 29 100.0 32 ............................. ACCTGGATGGAACAGTTGATGGTTCGAAGGCC 96765 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCACATACGTGGGGATAAACCG # Left flank : GATAAAACGGCCAGCGACACCTATCGCTATCTCAACTTTGACCGGCTGTCACAGTACACCGAAAAAGCAGACGGCGTGATTTTTCAGACTGCGGTCTGAGAAACGCAGCGTGTTGCTGCCACCTTACTGATGACTGAAACGGCCTGAGGAGACTCAGGCCGTTGTTTTATATAGTCAGATTGCAGGGTGACGATAACCTATTCTTTCTCCGGATATGGTACATAATTAACCCGCCCGGCAAGATCACCGTTTTTCATTATGTTGCCACTTGCGCAAATCATGCTGAACGATGGTTTGTCCAGTCATTATCGTCAGTTGCTGAAAGCGGAGGAAAGCTGTATTAACAGCAGAGGATGTCTCTTTCCCTGCGTTGCCGTTGCAATTTATGGAAGGATTTATAACCTTCTCCACTATGCCGCTTAACAACCAAAAAATGGGAAAAAAATCGGTAGATTTTTTTTAATAAAAAAAGCATTGTAAATCAGTTGATTATTCTTAGA # Right flank : GCAGGTGAATCAAAAGAAGGCGCTTGCTGGCTGGCAATCGGCTCATGTCGTTGGTGCGCGACATGTCCCCTCGTCGGGTCTGGCAATGACGCGCGCATTAACCCTCTTTTTTACTCCTGCGGGTATCGCTCTGCTGCGTTGCTTGTATGCGATATTGTTCGCCGCTGAATGTGTTAGCAAACGCTGTTTTTTTACCGCCGGACTGCAATAATTAACCGGTCAATAATAATGTGTTCGCCGAAAGGGACGCTTGTGCGACAGAGGGTAGGAGGGCAGCGCTATGGAATATGAGTTATTACGCGATGTCACCGGTCAGCTGAAAATGCGGATGTCGATGGGGCATGAGGCGGTTGGCCACTGGTTCAATGAAGAAGTCAAACAGAACCTGGCGCTGTTGTCGGAGGTGGAGCAGGCTGCTGCCAGCCTTCGGGGTAGTGAGCGACAGTGGCAACGGGTGGGTCATGAATATACCCTGTGGATGGATGAAGAAGAGGTAATTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATACGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //