Array 1 242356-243731 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINW01000025.1 Pigmentiphaga sp. NML080357 NML080357_S20_L001_001_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 242356 29 100.0 32 ............................. GCGGTCGCCATAGGTAGTGCTCATCGGCGAAA 242417 29 100.0 32 ............................. CTTCTCCCGGCAAACGTGGGCGACGATTGCCG 242478 29 100.0 33 ............................. CGCAGAAGAAGGCGGAGCAGAACCGCGTTCTGC 242540 29 96.6 32 ............................C GCGCCGCCGCAGTTTCTGCCGGTGCCATCGAG 242601 29 100.0 32 ............................. ACGCCCAGCTTATCGAGTCCCGGGAGTTTGGC 242662 29 100.0 33 ............................. CAATTTGCCGGCGGCCATCTAACGATGATCGGG 242724 29 100.0 32 ............................. GATTGGACGGACGCTTTGAAGGGCATGTCGAA 242785 29 100.0 32 ............................. GTCGCCAGCAAATGCGCGGGCAGGGCGCTATC 242846 29 100.0 32 ............................. GGGCTCATACTGGATGCCGACGTCCAAACTCC 242907 29 100.0 32 ............................. CCGATCATGGCTTTCTGCTCGTCATCACGGTC 242968 29 96.6 33 ............................A GGGCACCTCCGGCAATTGCGCCGGCGGCCCCAC 243030 29 100.0 32 ............................. CAAATCATCAAGAACGCCATCGTCTACAAGGC 243091 29 100.0 33 ............................. GTCATATTCAGCCGCGCCGCCGGGGCGGCAACC 243153 29 100.0 32 ............................. GCCTCCCGCATTTGTGGCGTCGGTTCAACCGG 243214 29 100.0 32 ............................. TAGTCGCGCAGGGACATGCCGGACCCGGGGTT 243275 29 100.0 32 ............................. ATGTACAGCGGCGACATGTCCATGTCTGGCCC 243336 29 100.0 33 ............................. ATATCATGCCGCTTCTGTCGGCCATCCACGCGC 243398 29 100.0 32 ............................. CCCCGGGGGAAAGACGCAATCAAGGGAAGCGG 243459 29 100.0 32 ............................. GGATATCGGGCACGATTTCGTTGGTCTGCGAC 243520 29 100.0 32 ............................. ACTGACCCAGCCGGCGCCCTGAGACTGTAGAG 243581 29 100.0 32 ............................. AAACGGCTGGTCGCTCGCATCGGAACCACTCC 243642 29 93.1 32 .............G.............T. GAAACCGCCATGTCCGTTTTGACTTAAGGCAC 243703 29 72.4 0 .........T.A.G.....A...C.GT.A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.2 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : GTGAGCGACGAGCAATGAATGGTGCGAGCCGCCGTGCGGCATGAAATCAGTCCTGGACGCCAAGGTGCCGACAGGACAATGCGCTCGACAGCTATATCAACGCGGGTTCATTGATGACCCGGTCAATAAATCCAAGTCCTTGTGGCTGACCGACGAAGGCGTACGGGAGTCCGAGCGTTTGTTCATGAAGCTCTTCACGAAGAATGCAGCCCAGGGGTCTGGCGAGTCCCAGCTTTTGCCGTCGGCTAGAGCAATCATCAGTTTCGTCAGGGATTTCTCTGTGCGATTGACGAAGAGAGGACGGTAATCGACAGGTCGGACTTACGGCTGGGGCGAAGCGGAGTTAGCGTGATGGTGTTTCCTTCATCGGCCCAGTACGATTGATTACGAGGTTTGGATGTAAACGCGTTTCTTCCGATTGGAAGTATTGGCGTCGTTAAAAAACTGGTAGATTTTCGCCGGTTTGTTTTTTCTTTTTAAATCAATCGGTTAGATTTGGT # Right flank : AATCTCTAGAAGGAGATTGACCCTACTGATTTTTGTAACTACAATAATTGAAATGCACATCGTCTTCGACCCTGCAAAAGATGCCGCAAACATGGCTAAGCACGGCGTATCGCTTGCAGGTGCTGTCGAGTTTGAGTGGAGTGATGCGCTGATGAGGGAAGATCAGCGACATGATTACAAGGAACGGCGGATGACTGCCATCGGCTACATCGGCCAACGGCTATTTGTGGTCGTGTATGTTGATCGTGGCAATGCGCGGCGCATCATCAGTCTGCGCAAGGCCAATAGCAGGGAGATGAAACTCTATGCCCAAGCTTAAACCCGGTACCATCGTGCCGACCCCAGAAGAAGACGCCGAGATCCAGGCCGGCATCGACGCCGATCCTGATACCCATGAACTGACGGCAAACGATTTCAAGGTGATGCGTCGCGTCGGGCGGCCCCGTGCCGCAGTAACCAAGACTGCCGTGACGATCCGGTACGATCAGGATGTCATCGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18813-16703 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINW01000031.1 Pigmentiphaga sp. NML080357 NML080357_S20_L001_001_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18812 29 100.0 32 ............................. ATCGCCGGCCACTACCTGTCCGCCCTGATTAA 18751 29 100.0 32 ............................. GTAGTTGGGGTAGGCGTATTGTCGATGCTACC 18690 29 100.0 32 ............................. GCCGCCGCTACTGTGCAGGCGACCGTGCAGGC 18629 29 100.0 33 ............................. GCGATCCGCGATGTTGCTAGATACCGGGTATCC 18567 29 100.0 32 ............................. CTTCGCCGCCCAGGGCTGAAATCAGGTCTTCG 18506 29 100.0 32 ............................. CAGGTCGAGCGAGCGGGTGGTGATCTCGCCGG 18445 29 100.0 32 ............................. ACGTTCGATGCTGTTGCTAGATACCGGGTATC 18384 29 100.0 32 ............................. CTGGTAGGCGAAACCGTCCGAGAGGACGATTG 18323 29 96.6 33 ............................A GACAGGAAAAAGCCCGGCTTCGCCACTTGCGAC 18261 29 100.0 32 ............................. GGCGCCTGGGGCCAGGTAACGAGGGCGGCGCC 18200 29 100.0 32 ............................. GCCCGCCACGGCGTTTTTTCGGCCTTGCCTAG 18139 29 100.0 32 ............................. CTGCTGCGCGGTGCACAACGCGCCGGCGTACA 18078 29 100.0 32 ............................. CCCCTGGCCAGCCTCGCGCGGATGCTGCGCCA 18017 29 100.0 32 ............................. TTCGTTCGCGGCGGCCGGGGAAGCGCGAAATC 17956 29 100.0 32 ............................. TCTTCAATGTCCTGGGTGAAAATGTCAGAGGC 17895 29 100.0 32 ............................. CTCGAAACGATAAGCGCGGAAATTCGCGACAA 17834 29 100.0 33 ............................. CAGTGACGCCCCTCTACAGAAGCTTCTGGACGA 17772 29 100.0 32 ............................. CCCGGTATAGTTCTCCGTTGTAGCGGAATACC 17711 29 100.0 32 ............................. AAGTTGCGTGCCCTTCCTGTCGAATTGAGGAA 17650 29 100.0 32 ............................. ATGGCTAAGAAGCGGGCGCAGATCGACTTCAC 17589 29 100.0 32 ............................. TTACGGCGGCGGGACACGGCTCGCGCTTGGCA 17528 29 96.6 32 ............................A CACTGAAAGCACACGCACACTCGGTGCACGCC 17467 29 100.0 32 ............................. CGTCCGGAGATGCGGCTGTCGCTGGCAATGCG 17406 29 100.0 32 ............................. TAACCTTCGTCCGATCCGACGAGACCGCCTGC 17345 29 96.6 33 ............................A GCAGTTGCTCGTTTCAAGACGGCGAACCCGCGC 17283 29 100.0 32 ............................. GCGAGGAATTGCAGTTCGACGTCTTCGTTGTT 17222 29 100.0 33 ............................. CCGTGGTACATGCACACCCAGTCGGCGCCTTTC 17160 29 100.0 32 ............................. CGCCAGGCCTTCGTCTTGGCTGGTCCGGGCCA 17099 29 100.0 33 ............................. CGGAATGATGGCATCCGCGTTGCCGGACAACCC 17037 29 100.0 32 ............................. GCGCAGGATCTGACTGCCTACGAGCGCCTCAT 16976 29 100.0 32 ............................. CTTTCGGCAGCGCTCAAGGTACGACTCTTCAG 16915 29 100.0 32 ............................. CGCCCGGAACTTCGCCTATCGCTTGCCATGCG 16854 29 100.0 32 ............................. GTAGTCCAGATCAACGGAAAGTGGGTATCCAC 16793 29 93.1 33 ............TA............... CCGATTGTCACGTTCGATACCGAACCGGCATTC 16731 29 72.4 0 ........A....T....A.....GGAGA | ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.7 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : CTTGGACGAATCATTCCCTTGATCGAGGATGTATTGGCCGCTGGCGGGATTCAGCCGCCCGAAGCGCCGCCGGAGTCGGTGCCGCCCGCCATCCCAAACCCTGATAGCGACGGCGATGTCGGGCATCGGAGCCGATAATGAGCTTCCTTGTGGTTGTCACGGAAAATGTTCCCCCAAGGCTGCGAGGGCGATTGGCCATTTGGTTGCTCGAGGTCCGGTCCGGTGTCTATATAGGAGACGTTTCGCGACGCACGAGGGAAATGATCTGGCAACAGCTCGACGCGGGTCACGAAGACGGCAACGTCGTAATGGCCTGGGCAAGCAATAGTGAATCTGGCTACGACTTTCAGACATTGGGGACAAACCGTCGGGAGCCGATCGATTACGATGGGTTGAGGCTGGTTGCGTTCTTGCCCCCAGAGGGTCAGGCTCTTTAACAAAAAGTTGGTAGATTCTTGTGGTCCGATTTTTTCTTTTGAAAACAATCGGTTAGGTTTGGT # Right flank : TGCACGAGCGTGCCACCCACGATCTGCGCTGTGTGCAAATAGGTCTGGGGGAATGAAGCTGAGGATACAGGGTTGAGTCTATGTCTATGGACATAGGGGTGACCTCAGCCTCTATACCTCCTACATCATCAGTTCTGTCGGCAACAATACCTGGGGCGTGATCCCTTCCTCTCTGACTTGGCGGCCGTGGCGTTATGAGTTTAAGCGGGGTGCTGTCGAGCGAGACGGAGGGACCGGTGGTCTCGCCTGTCGTCATGGTCGACCAAGCGCATTGCCGCCTGCCACGTGCACCCCGCCACAGGCGGCCAAGAGTTCTGTCAGGCTGACTGCGCAGGAGGTTCGGAAGGTCTTGAGCTGGAACGCTCGACGCAGCGAGAAATCCAGGGGATGGAGGGGTAGGGGTTCGCTCGTCATTCTTGGAGTGAGAGGGGGCGGGTGCGGAGCGCTGCCATCCGGCATGCCTGGCGTTAAGGGAAGTGGTTCTAGCGCAACCCGGCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31523-28868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINW01000031.1 Pigmentiphaga sp. NML080357 NML080357_S20_L001_001_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 31522 29 100.0 32 ............................. CCGCTGCACGAGATGGCTTCGCAGACGATCCC 31461 29 100.0 32 ............................. TGGTGACGATGCGGGAAGGCCGCCAGACTTTC 31400 29 100.0 32 ............................. GCCTCGGAGGCGAGTTCCAGGATCGACAAGGT 31339 29 100.0 32 ............................. ATGACGCGGACATTGCGCATGAACGTATGCGC 31278 29 100.0 32 ............................. TGCTTGTTCCGGTCGGTACAAACCAGACTTCA 31217 29 100.0 32 ............................. GATGTAGACCCGTACGTCATCGGGCAGGCGCG 31156 29 100.0 32 ............................. TCCTGGTCGATGGCCTGCTGCTCGCGGTTCCA 31095 29 100.0 32 ............................. ATGGCTTGGAGGTTTGCGGCCGGCGTCCGATA 31034 29 100.0 32 ............................. GAGGCAGCATGACCGACACGACCGAAACGTCC 30973 29 100.0 32 ............................. TTGTCGCGCTCCCACTGGCTGTTGAAACGGAC 30912 29 100.0 32 ............................. TAGCAGGCGAGAAAGGCGATCCGCGTTGTTGC 30851 29 100.0 32 ............................. TCGCTGACCGAGGACATTAAGCGCCTGAGCGA 30790 29 100.0 32 ............................. CCGCGCTCGATCGTGCCGCTCGCGTGATGGAG 30729 29 100.0 32 ............................. GGGACCTCCAGGTCGATAGCAATAGCGTTCGG 30668 29 100.0 32 ............................. CGGCCGGCGAACTCCCTCGAGGGCTTCTCGGT 30607 29 100.0 32 ............................. AGGCCGCCGGTCAGGTCATCATTGATCGCGCC 30546 29 100.0 32 ............................. ATCGTCAACAAGCTGATGCAGCAGCCGGAGAT 30485 29 100.0 32 ............................. CGGCCGTTCCTCGCCATCGATGATCAGCGCGC 30424 29 100.0 32 ............................. TCGTTTCGTGGCGGAATGATCCCGGCGCTTGG 30363 29 100.0 32 ............................. GGACATGCCCGCGCACGTCAACGCGGGAACGG 30302 29 100.0 32 ............................. GGCGTAGGCTTCGCCTAATCGGGAAATGATAG 30241 29 100.0 32 ............................. GCGGACAGCAGGAAGTCGCGGAACTCCTTGTC 30180 29 100.0 32 ............................. ATTCACCCTGACCAACGCAACGAGATGGACAT 30119 29 100.0 32 ............................. CCGACGCCGTGCCCCATCGCATGCATAGCTAG 30058 29 100.0 32 ............................. CCTATACGGCTTGCTCGTGGATTGGCGCCAGC 29997 29 100.0 33 ............................. CCATGCAAGCGCAATGTGCAGCGCCATGAGTGA 29935 29 100.0 32 ............................. CCATGCGCAATTGCGAGAAATACCGCGATTCC 29874 29 100.0 32 ............................. CCCTCACAACGATGTCAGCGAAACTGAGCAAC 29813 29 100.0 32 ............................. CCGAAAACGTATGGATGGACGGCGCTACGCGC 29752 29 100.0 32 ............................. AAGACGTCAACACGCGTCAATCGAACAGTCCC 29691 29 100.0 32 ............................. CGGGAACTCGAATTCAAAGAGTCCTTCGACGC 29630 29 100.0 32 ............................. CCTCTTTCTTTTCCACCATCGCGACCGCACTG 29569 29 100.0 32 ............................. TGACTTTTGAGCATGCCGATTTGACGGCAGGC 29508 29 96.6 33 ............................A GGCGGCCAGCGAACGGCCGCTTGTTACGCCATC 29446 29 100.0 32 ............................. GGATGCGCAGCCGATATGACTGGCCTGCCGGT 29385 29 100.0 32 ............................. TATCGGCTCCTGAACCGCTGGACGATGTTGTC 29324 29 100.0 32 ............................. CGATCCGAATAGGCGAGCAGGACGCGCTAGCA 29263 29 100.0 32 ............................. CTTCAGGACAACGCCGTCACGGTGCCAGTTAG 29202 29 100.0 32 ............................. CTGACGGCGAGTTCCTCCGCGGCGTTCACCCA 29141 29 100.0 32 ............................. ACGAGGCGACCACGCGCCTTATCGCGGTAGAT 29080 29 100.0 32 ............................. CAGCAAGCGAAAGCGGATGCCGGAATGCGCAG 29019 29 100.0 33 ............................. TAGCGTTCAGGCAGTGGCACGCCTTCTTCAATT 28957 29 100.0 32 ............................. ACCTTTCGTTCCCCTCAGCACCATGGGATCCA 28896 29 93.1 0 ...............C..........T.. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.8 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : GTTTTCTGCGGCTCGAATTTCGGCTTTTCCGACGAGTACGCGCAAGCCGCGCGGCGGCTGGGCGCGCAGATCGCCGCCCGCGGCCTGACGCTGGTCTACGGCGGCACCCACAAGGGCTTGATGGGTATCATCAACCGCCGGCTGCATGATCGGGACGGTCCCGCTACGTGAAAAAAACACGCTGATGTCAATGCCGTCGGTTCGGTCAACTTGTTCTCGTAACCGCTTTTTAGCGACCTGTTTAGATGGGTCATATGCTGACCCGAGGGAAAAGCCACTTTGAGTTAAGGATGTGAGGGGGTTGTGCTCGCGGGATGGAGCCTGGATCCTCATTCCATGCGGAACGTCCAGAGCTCGCATTTGTTGCGGCTGAGAGCTGATTGGCTATGATGGCTTGAGGGACGATCTGTTTGCCTTTTCAGGCGGGCTTGGTTCTTTAAAAAGTTGGTAGATTCCAAGAGACCGATTTTCTCTTTTTAAAACAATTACTTATATTTGGT # Right flank : CTCGGTCTGTCGAAAGCGTGGTGTAATCAAACATGCAACTGAGCGGCTTCGCAACACCAAAAGTGCCGCCAGCATCTGCGACCAAACGAAGTGAGCGGCGTAACCTTCGGAGGCCGGCTTCCGTCTTGTCGGATACTACAATATAACTGCCCTCGCAATGATCTCTGGAGGACGACCATGCGACCATCCGAAATTCTTGCATTGAAACGAAGCGCGGTACGCGAAGCGGCAGCTCGTTTCAAGACAGCGAATCCACGCGTCTTTGGTTCGGTTCTACACGGTACTGATCAGGACGGCAGCGATCTCGACATCTTGGTCGATGCTCTGCCCGGCGCTACATTGTTCGACCTCGGCGGCCTCCAGGACGAATTGGAAACGCTGCTGGGGGTGCATGTCGACTTGCTCACGCCGGGCGATTTGCCCATGAAGTTTCGGGCCAAGGTTCTTGCGGAAGCCCAACCCGTATGAATCGCCTTACTGATTATCTCGATCACATGCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 49998-49298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NINW01000031.1 Pigmentiphaga sp. NML080357 NML080357_S20_L001_001_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49997 29 100.0 32 ............................. TTTGCGCGTGATTGCGAGATATGCGGGGATAT 49936 29 100.0 32 ............................. CCTGGGTGGAGCAACACGGCGGCAATATGGCC 49875 29 100.0 32 ............................. CGAAGCGCCGTTCAGTGAGACAGCAATGGGCT 49814 29 100.0 32 ............................. GGGGAGTCGTGAATGGCAACGCCTGGAACTGC 49753 29 100.0 32 ............................. TGAATTTCACCAGCGGGCGCATGGGGCGCAGC 49692 29 100.0 33 ............................. CGACAAGCGAGGGGCCATGAGGGTTATCCGGGC 49630 29 100.0 32 ............................. GTCAGGCCCTTCTCCTCCAGCTCGCGTCCGAA 49569 29 100.0 32 ............................. CTCTATGCCCTCGCAACCGGGGTCGAACGTCC 49508 29 100.0 32 ............................. AGCACATTTGGTACTTCGAGGATCGAGGCATT 49447 29 100.0 32 ............................. TCCACGACACCTCGTCCTGATCAGCAATGAAA 49386 29 89.7 32 .........................G.TT AGCAAGTTCGACGAACGCATTAGGCTGGCCCA 49325 28 86.2 0 .........A.......A......C-... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.0 32 GTGTTCCCCGCGGGAGCGGGGATGAACCG # Left flank : GCTTGGTCGGATCATTCCGTTGATCGAGGAGGTGCTGGCTTCTGGTGGTATCCAGCCACCGGAAGCGCCCCTCGAGTCAGTACCGCCAGCCATCCCGAATCCCGAGAGCCATGGGGACGTCGGGCACCGGAGCCGATGATGAGCTTCCTCGTGGTCGTCACCGAAAATGTTCCACCGAGGTTGCGCGGGAGATTGGCCATCTGGTTGCTCGAGGTTCGATCCGGTGTCTATATAGGCGATGTCTCGCGGCGCACGAGGGAAATGATTTGGCAGCAGCTTGATGCGGGCCATGAAGAGGGGAACGTCGTGATGGCCTGGGCCAGCAATAGCGAATCTGGCTATGATTTTCAAACGCTTGGAGCAAACCGTCGTGAACCTATCGACTACGATGGATTGAGGCTGGTTGCTTTCTCGCCTTTAGAGATTCCGGATCTTTAACAAAAGTTGGTGGATTTTTTCGGCCTGGTTTTTTCTTTTGAAAACAACCAGTTATGTTTGGT # Right flank : TCGCTTTCGCTACTACCGATGCCCCTCACAGCACCAGTTTGGTGGGCAACAGGATCTCGAATGTGATTCCGTCCTCCGACCGGCCCGTGGCGCCACGCTGCGAGCTGAAGTAGAGTCGCGTCCCGTCGGGAGACACCGCGGGGCCGGTGATCTCGCTGTCGTCGTGGCCTACCAGGCGCATCACCGCCTGCGAGGTGCCGTTGTCGCGCAGTACGCCGATCTCGAGATTGCCGGCGTCCTCGGCGACCAGCATTTCGCCGAAGGACGTGATCGTGATGTTGTCGGGTTCGTCGATGCTGTGTGTTTCCGGCGTGCCCTGCTTGCCGTCGAAGATGATTTCCAGCGTGCGGTTGGCGGTGTCGTAAGCCCAGATCCGGCTATTGCTGGAGGTGACGAAGAACACGATGCCGTTGAAGAACCAGATGCCTTCGGCTTTCTGGAAATAATTCCCGGGCGGAAGAATGCCGCCGGCACGCAAGGTATCGCGTATGCTCTTCTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGGGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGGGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //