Array 1 129293-127030 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027770.1 Staphylococcus felis strain ATCC 49168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 129292 36 88.9 29 ..........CGC......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 129227 36 94.4 28 A........................G.......... AATGTGGAATGCACTACAACATTAGCGG 129163 36 94.4 30 ........G.............A............. ATGCCGGACTAATTGCTGAAGATGTTGAAT 129097 36 97.2 30 .........................G.......... ATACGCGCTTATTAAAAGTATAGGGTTATT 129031 36 94.4 30 ........G................G.......... ATTTGTACGTTCGAATACAACGGCTACGTC 128965 36 100.0 30 .................................... TACAGCTGAATTTATGCCTGCAGAAGTTGA 128899 36 100.0 29 .................................... TTATGCCCTTGTTTAAATGGTCGTCACAG 128834 36 100.0 30 .................................... TTCGCTAAAAGCTGTTATAACTGATATGAT 128768 36 100.0 29 .................................... AAGAAATGACGTTACCAGAGTTGATTGAG 128703 36 97.2 30 .........................G.......... TATTTTGTATTAATTCTTTACTACTGTTGT 128637 36 97.2 30 .........................G.......... GTTGATACCAACCCAGACCACCCGGAACAT 128571 36 97.2 30 .........................G.......... CGTTGTTTTTTAATAAGTGAGGTGTGTAAA 128505 36 97.2 31 .........................G.......... ACAGGTGCTAATGCAACCGCTGTATTATAAA 128438 36 97.2 30 .........................G.......... GTGTCGAAGTTAAACAAACTAGAAGTTTAA 128372 36 97.2 30 .........................G.......... ACGTTTCATAAAAGATAAATCTGAAACTTT 128306 36 91.7 29 ...C.......G.......A................ ATAAGTATGTGACTAAGAAAAGAGGAATA 128241 36 97.2 29 A................................... TTAGAAGAAACATGTATCACGTTAGTTAA 128176 36 97.2 29 ........G........................... ATTGAAGATTACAAAAAGAAATTAGGTGA 128111 36 100.0 30 .................................... CGTTGAATTTGAAAAACCTGGTGAGTACAT 128045 36 100.0 29 .................................... ATAAACATGTAACACAAAAAAAGGGTACG 127980 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 127915 36 100.0 30 .................................... TTTTTGTTTTTCCTTCTAATGCACCGCCTT 127849 36 94.4 29 ..............G..........G.......... ATATGCAAATTGCATCTTAAAATGGGCGC 127784 36 97.2 29 ............C....................... TACCTTACGAATTAAAAGAGTTAGATCGT 127719 36 94.4 30 ..........C.C....................... ATTTTTATTCGATACTTATTCTCGAATTAC 127653 36 94.4 30 ........G................G.......... ATGAGCCAGTTTTGTTTGATGCGCCACTTA 127587 36 97.2 29 ............C....................... AGTACGTGTCGATTCATTTTAGAACGTTT 127522 36 97.2 29 ............C....................... GATATTACACGTACAGCTTATGACGAAAA 127457 36 100.0 29 .................................... TTAACTACTTCTTGCTCAACTGGTCTTCC 127392 36 97.2 30 ...........................C........ TGACGACCCTATCACTGACAAATTAGTTGG 127326 36 94.4 29 ........G................G.......... GATAAAATTGGGCTAATGTGGAAAGTGTT 127261 36 97.2 30 ........G........................... AACTCTGCAAATTATGAAATTGTCGAGTAT 127195 36 94.4 29 ............C......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 127130 36 97.2 29 A................................... GAATTTAGAAAAACTCAAGAAGCTACGCA 127065 36 88.9 0 ..............T..........T......T.C. | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 96.6 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : ATTTTTTTCTGAATTTTTAGATATAATGATAATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATTGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 171187-168924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027770.1 Staphylococcus felis strain ATCC 49168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 171186 36 88.9 29 ..........CGC......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 171121 36 94.4 28 A........................G.......... AATGTGGAATGCACTACAACATTAGCGG 171057 36 94.4 30 ........G.............A............. ATGCCGGACTAATTGCTGAAGATGTTGAAT 170991 36 97.2 30 .........................G.......... ATACGCGCTTATTAAAAGTATAGGGTTATT 170925 36 94.4 30 ........G................G.......... ATTTGTACGTTCGAATACAACGGCTACGTC 170859 36 100.0 30 .................................... TACAGCTGAATTTATGCCTGCAGAAGTTGA 170793 36 100.0 29 .................................... TTATGCCCTTGTTTAAATGGTCGTCACAG 170728 36 100.0 30 .................................... TTCGCTAAAAGCTGTTATAACTGATATGAT 170662 36 100.0 29 .................................... AAGAAATGACGTTACCAGAGTTGATTGAG 170597 36 97.2 30 .........................G.......... TATTTTGTATTAATTCTTTACTACTGTTGT 170531 36 97.2 30 .........................G.......... GTTGATACCAACCCAGACCACCCGGAACAT 170465 36 97.2 30 .........................G.......... CGTTGTTTTTTAATAAGTGAGGTGTGTAAA 170399 36 97.2 31 .........................G.......... ACAGGTGCTAATGCAACCGCTGTATTATAAA 170332 36 97.2 30 .........................G.......... GTGTCGAAGTTAAACAAACTAGAAGTTTAA 170266 36 97.2 30 .........................G.......... ACGTTTCATAAAAGATAAATCTGAAACTTT 170200 36 91.7 29 ...C.......G.......A................ ATAAGTATGTGACTAAGAAAAGAGGAATA 170135 36 97.2 29 A................................... TTAGAAGAAACATGTATCACGTTAGTTAA 170070 36 97.2 29 ........G........................... ATTGAAGATTACAAAAAGAAATTAGGTGA 170005 36 100.0 30 .................................... CGTTGAATTTGAAAAACCTGGTGAGTACAT 169939 36 100.0 29 .................................... ATAAACATGTAACACAAAAAAAGGGTACG 169874 36 100.0 29 .................................... TGATTTTTGGTTAGGTCAACTTATGACAA 169809 36 100.0 30 .................................... TTTTTGTTTTTCCTTCTAATGCACCGCCTT 169743 36 94.4 29 ..............G..........G.......... ATATGCAAATTGCATCTTAAAATGGGCGC 169678 36 97.2 29 ............C....................... TACCTTACGAATTAAAAGAGTTAGATCGT 169613 36 94.4 30 ..........C.C....................... ATTTTTATTCGATACTTATTCTCGAATTAC 169547 36 94.4 30 ........G................G.......... ATGAGCCAGTTTTGTTTGATGCGCCACTTA 169481 36 97.2 29 ............C....................... AGTACGTGTCGATTCATTTTAGAACGTTT 169416 36 97.2 29 ............C....................... GATATTACACGTACAGCTTATGACGAAAA 169351 36 100.0 29 .................................... TTAACTACTTCTTGCTCAACTGGTCTTCC 169286 36 97.2 30 ...........................C........ TGACGACCCTATCACTGACAAATTAGTTGG 169220 36 94.4 29 ........G................G.......... GATAAAATTGGGCTAATGTGGAAAGTGTT 169155 36 97.2 30 ........G........................... AACTCTGCAAATTATGAAATTGTCGAGTAT 169089 36 94.4 29 ............C......A................ ATAAGCATGTGACTAAGAAAAGAGGAATA 169024 36 97.2 29 A................................... GAATTTAGAAAAACTCAAGAAGCTACGCA 168959 36 88.9 0 ..............T..........T......T.C. | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 96.6 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : TTCTCTTGTCATAAAAATCGCCTACTTTCTTAATTTAACAATATCTATTCTCATAGAATTTGTCCAACTAAGTGTAGACGATTCACATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAAGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : ATTTTTTTCTGAATTTTTAGATATAATGATAATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACACGTTTTAAAGTAGGGGATTGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTATATGACGC # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //