Array 1 24054-23841 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLW01000023.1 Levilactobacillus brevis strain NBRC 3960 sequence023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24053 29 100.0 32 ............................. CCTTTTTGGATAGCTTTCCCCAGCTTACGACC 23992 29 96.6 32 ............................T ATCCGGAACGCCGCGTGATCTAATTTTTCCAA 23931 29 100.0 32 ............................. TGCTATTTGAAATCTTGGGGTCCAGGCCCGTG 23870 29 75.9 0 A..........ACC........C.T...G | T [23844] ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTATTCCCCACGGGTGTGGGGGTGATCCC # Left flank : TGGCACAAAAGGAGTTGGCGGAGCGCTTGAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTAGAGAAAAAGGGATTCGTGACGCGAATGAAATCGCCCACGGACCAGCGAGTTACTGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTTTTAACAATTTTGGACGATACGGAGTTGGATCAACTTTCGCATATTTTAGATAAGATTAATCAACATATGTATGAAGAAGTTAATGCCGCGAACCCGACCTGGTTCAATAAGTTCCATCAGGTCATTATGAATCGTATGTTGTCGCACTTACATTCAGGAGAAGATCGGTAGGCTGGTGGCAGTTTCGGCGATATTTATGAGGGCTGGTTTATTTATTAAACAACTTTGGCGACTTACACTCAGAAGCAAAGTGATGAAAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGGATTCTTTAGT # Right flank : CTACTTCCATAAAGTGGCATTAGTGGTAGTAGCATTGTCACAAGCAAAGAACCACCACAATTTATCTGCTAGGTAATCAGACCCAAAAAACCACCGCACAATCATCAGCCATTTGGCCGAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATCGCGCCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGAACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGAGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGGGAGAAGAACGCGCCAAAGATGAAGAGTACCCCAGTGACGATG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2498-2280 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJLW01000077.1 Levilactobacillus brevis strain NBRC 3960 sequence077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 2497 28 100.0 40 ............................ CATAAAGTTGATTTTACTCAAACGCTAGAAGATGTATTCC 2429 28 92.9 33 CC.......................... CCTTGCAAGCCAGAGTAATCCAACGGACAACTT 2368 28 100.0 33 ............................ TTGCTGCTAGCATGTATGCTTCGAGTACGACAC 2307 28 82.1 0 ............TA...A......G..T | ========== ====== ====== ====== ============================ ======================================== ================== 4 28 93.8 36 GTATTCCCCACACGTGTGGGGGTGATCC # Left flank : CGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACAACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATTGTTCTCGGTCAGACACTCCATGATCAGCCAACTGTATTACCATCTGCGACAACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAAACCAAGTCATTGAATCAGCAGTACCGACTGATCAAGTGGACCTACAATTGATTCAGTAACTGATGAAATAAAGCGTTGTGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCAGATTGCCGTTGCCACGTTTCTGCGGTATGCTATAAAATATAAATGAGTCTCACAACGAAACTCATAAAAAATGGCGGTTTTGAAATTTTGGAATGCCGGTTTGGCGGTGTTTCTTTAGT # Right flank : CAATACTGGGGATGGCTCTAACACCGGTAACGGTTCAAATACCACTGGTGATGACAACAGTTCAAGTATCTCAGTATCAATCAGTTCAAACGATTCTGATGAACAGATCAAGCAAGCTGTCGCAAGTCTTAAAAAGATTGCTGCTCGTTACAGCATTAGCACTACCGCTTTAGACAACGTGGTTGCTAAGGCATCAGATCCAATGTCAGCAACTGACAAGGCAGAAATTGTTGCTGCATTCAGTAACGTGGTCTCAAAGATTAAAGATATTCAGAATTCCGATCAAAATACTGTCGATCAGAATACTGGTGACAATGCTTCAAATCCTAACCATGCCAATACTGGTTACACAACTCACTTCTGAAGTTGACGTGAACAACACGAAACAAACTGTTCGCGTGACCAATCCAGCAATCCATACCATGCAGACTATCAATAACAAGAAGAACTTTGTTTTGAAGGGTGATGGCTCAAACGTGCAAGAACCAATCGTTGATAAA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACACGTGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //