Array 1 478118-479165 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSPH01000005.1 Pseudomonas aeruginosa strain 4068 IPC1152_5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 478118 28 100.0 32 ............................ GAAGAACATTGCTGCGGCGATCTGGGCCTCGC 478178 28 100.0 32 ............................ TGGTGCACAAGAATCGCAAGCGCATGGTGACC 478238 28 100.0 32 ............................ TTGACCACCCTGGAGACGACCGACCGGGCCGG 478298 28 100.0 32 ............................ TGATGCCCGACATGGGCCGCTTCGCGGGAACC 478358 28 100.0 32 ............................ TTGCAGTGATACCGGCGCTTGGACAGCAGGAT 478418 28 100.0 32 ............................ GCGTTCGTGGACCTGGCAGAGGTGGCGATCAA 478478 28 100.0 32 ............................ TGGTCAAGCTGGGCGTCCAGGTTCCGGTCAAC 478538 28 100.0 32 ............................ ACATTCCGCCTTCGTCGCGGGGTCGCACTTCC 478598 28 100.0 32 ............................ CGACTGTCCCGGTAGAGATCCGTCATCTTCGC 478658 28 100.0 32 ............................ TGGGCGACTTCAGCCCAGCGCTGGGCTGAGGC 478718 28 100.0 32 ............................ TGCGGGGACTGCTCTGGTGTTCCAGTCAGCGA 478778 28 100.0 32 ............................ ATATGCTCATCGGTGACGCCGGCGGCGCGCCC 478838 28 100.0 32 ............................ CGGCGAAGTCCCGTACCAGCCGCTCAGCAACG 478898 28 100.0 32 ............................ TTCCTTCCATTGGGTGAGTCGCAGCGGAGCCG 478958 28 100.0 32 ............................ AGCATTTTGCGCGGGGTTTCCCAAGCAACCGT 479018 28 100.0 32 ............................ TGGACGAGGTGGGAAAGGTCTTGCTCCAGGTC 479078 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 479138 28 78.6 0 T.........AC.....TC..C...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 488321-487693 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSPH01000005.1 Pseudomonas aeruginosa strain 4068 IPC1152_5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 488320 28 100.0 32 ............................ TGCTGCGTGGGTACACCATCGAAGATCAAGCG 488260 28 100.0 32 ............................ GGCACGACGTGCCGCCCACCCCGGCACCTGGT 488200 28 100.0 32 ............................ TGCTGACCGAAGCGTGTCCTTTGAGAACCGAA 488140 28 100.0 32 ............................ CATCGAACCGCCCTCCTCGATCAGCTCCGCAG 488080 28 100.0 32 ............................ GCAACGTCTCCGGCCAGCAGAGCCCGGACGGT 488020 28 100.0 32 ............................ TGTTCCGTGCCCTCCACCTTCGCCGAGGCAGG 487960 28 100.0 32 ............................ TAGCTGATCCCAATAGATCGCGCAGTATTCAT 487900 28 100.0 32 ............................ TCAGTGGCCTCGTTGTTGATGATCTTGTTGTT 487840 28 100.0 32 ............................ TCGCGGTGACGGGCATGACGGGCGCTGGCAAG 487780 28 100.0 32 ............................ GAATCGGTAGGCGTTCAACTGGCGGTTATCTC 487720 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGGCCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGATGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 219499-218571 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSPH01000007.1 Pseudomonas aeruginosa strain 4068 IPC1152_7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 219498 28 100.0 32 ............................ GGGATAATCTCCCAGCAAATGAGCCGCATCGA 219438 28 100.0 32 ............................ ACCAGCATCATGGACATGTTGGCCACGTCGGC 219378 28 100.0 32 ............................ TGCCGGTAGCGTAGTCGCCATCAACCTCTCCC 219318 28 100.0 32 ............................ TTGTGTACGATGCCGTCAGAGGTCTTGACTTC 219258 28 100.0 32 ............................ TTGGTTGTGGTCGGGACCTACGTCAATGGCGC 219198 28 100.0 32 ............................ AAGTGCGGGCTTTTTTGTGCCTGACGATCTCG 219138 28 100.0 32 ............................ TGGCCCAGCGTCACCTTGGCGATGGTCTCATC 219078 28 100.0 32 ............................ AGTTCCATACGTTCTGGTTGAATCGCAGGAAA 219018 28 100.0 32 ............................ TGGCTGAGCGGAACCTATATCTCAAAGGTGAA 218958 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGTGCGGTC 218898 28 100.0 32 ............................ GTCCAACGCCTCGATGTCGGCGTCTACCAGAT 218838 28 100.0 32 ............................ GTCTGCACCGGGCACTCGCTCTGCCAGCCGTT 218778 28 100.0 32 ............................ ACAGTCGGTCATCTTTCACGCGGCAAGTAATG 218718 28 100.0 32 ............................ TAATCCTGACAGGCCCGGTTCGCAGCCAGTAG 218658 28 100.0 32 ............................ AGCATCGAAGTCTGGCCGAACTTCCGCAATTC 218598 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGACCTCCAATTGCCTGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTAGGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTCTCTCCGGCAACTCCGCACACCTGTCAGCCACGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGAGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //