Array 1 533250-533641 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOF01000001.1 Streptococcus mitis strain BCC33 D8838_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 533250 30 96.7 45 .........................G.... AAATATGCGATTTTTGGCGGAGTTCTGGATTTTTCATTAAAACTC 533325 30 96.7 45 .........................G.... TGCAGACTTCTACATCGAGGTAGAACGTATCTCGGCTGGAAAGGT 533400 30 100.0 46 .............................. CTGGTATTTATATCAGTGCGATCAGCAGCCTTGGTCGTGCTTTATA 533476 30 93.3 34 .........................G...G ATACGAGCAAAAGACAAAGGCAAACCTGATTGGA Deletion [533540] 533540 30 96.7 42 .....................T........ TGTCTGTAATAACTGTGGTAGCTCTAGCTATCACTGGGTAGA 533612 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 6 30 97.2 43 GTCTCAATTCCTTATAGGTAAGGTATAACA # Left flank : AATAAATATTCGCAACACTATCAGGAAGTAACAAAAAACCGATCAGCCATCTAACTTAATCTCTATACTATCTGTGGTTGAAACACGAAAGAGTCTGGGACAAAAGTCTAACCTTGAATATAAAAAGCGAACAAAACAAGTTATCTGACACTCAGAATTCTGTATTGTTCGCTTTTTTGTTATAATCTATCGATTTTAAAAATTTATAATAAGGAATTCCTAAAATCAAAATCTTTTTGTCCCAGACTCTTCTTGATAATTCTTACAAAAGGAAGGAGCTCTCCTACAACTTTTATTCACATTTATATGTTGTGTCTTCTAAAATTTTCAACTATTCCTACCAAACAAAAGGCGAACAAATTCTCAGGCTTCCCAGTAGACATGAATTTGCTCGCTTTTTTGGTGCCTTGGAGACAGACAAAGACACATGGACAATATTTTATAGGTAATCTAGAACTTAAAAACCATCCAAATCCACATAATTTAAAATGGAAGACAGT # Right flank : AACAGTAATATCGCTGTTTCTATATTGATTTTATCAAAAAACAGGGCTTTTTTCAAGATTGCAAAATCTTAGCCACGCGCTTGCGATGCACATCATATGTCAAGATAATATACATTTATTTTCTCTTTTTGAAATAGAAGAAACAAATTGTCGAAAGAAGAATGAGCAAAGTAAGCCAAGATGAATAGGCCAAACTCAGATTACATATTGTCAAACAATTATCCTGCAGTTCTTTGATATTCGGAACAATCGCTAAAGCTAGACTTAAAACGGTTAGTACTAATACTCTGTCATTCAATTTATTACTTGCTTCCGTCTGACTGATATCATGCAGTTCACTGATTTGACTGTCCAGGAGATTGATATGCTTCTCGATATAGAGTGAGGTTTGCAACAATTCGTAGATCTCAATCGCCTGCTCCTGCGGGCAAAGTTCCGGAAGCAAAAATTGATTTTTAAAGGTCGTGTAAGCCTTCTGCAGCTTCAGTTTATCAGAAACT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATTCCTTATAGGTAAGGTATAACA # Alternate repeat : GTCTCAATTCCTTATAGGTAAGGTAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 536163-535319 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOF01000001.1 Streptococcus mitis strain BCC33 D8838_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 536162 29 100.0 49 ............................. AGATACTTCTTGATTTCTTCCAATATTGCTTCATGATAGAGATTAACTT 536084 29 100.0 46 ............................. TCAAACGTTGTATTTGATGTGGCAGTCAGACCTGTTTGAATGGTTG 536009 29 100.0 50 ............................. GTACGTTCTTTTTCAGAAAGAACATGGTACATGTTAAAGAGCGCTTTAAC 535930 29 96.6 43 ...A......................... GTGTGTTGTCTTTCATAAAAGTTCTTTTCATTTTTATACCTCC 535858 29 96.6 39 ...A......................... CTTACTTGCTGAGATGAAAGCAGTAAGTCGTCGGTGCGA 535790 29 96.6 45 ...A......................... GGTATCGAAATACCTGCATAACGTCCCAATTGTCTGCGGCGTATT 535716 29 96.6 42 ...A......................... AGAGCGTTGTAATGAGCTTGTGCTTCTTTATCCCATTGGTCT 535645 29 100.0 43 ............................. ATAAAATTAGTAAGTTTTCTGTTTGCTTCATAAAATATGTTTT 535573 29 100.0 44 ............................. TTATATTCTACAAAAAGTGTGCCATTTACTACCCCTAATTCATA 535500 29 96.6 46 ......T...................... GTTTAGGTTGACGATAACGTCGTCACTCGGCGTGAGACTCGAGAGT 535425 29 96.6 49 ...A......................... TCTTCTCATCTTTGGTTAGAATCGTTTTGTTGCGATTTGGATCCATTAA 535347 29 86.2 0 .........................CCTT | ========== ====== ====== ====== ============================= ================================================== ================== 12 29 97.2 45 GTTCTACCTTACCTATAAGGAATTGAGAC # Left flank : TCATAGTGATATTATCAAGAATCCTATTCCAATCAACTGTCTGAAAGTTAAGCCTGGGATCTCTTTTGAGTTTGGCTTTTATCTGAAAGATTGTCAGCTTTCAGACGGAGTTAAGGTTACGGTTAAACAAAAAATAGAGTTATTTAAAAGCATCTTGACTGATGTAGGCATTGGCGCTAAAACGAATGTTGGTTTCGGACAGTTAGAGTAGTAGAGGTCGATCGACAAGGGTATTTACAAATCGTATCTGAGGGACTCGCGCTATTCAGATAGCTCGAAAAGGTATGGAGGAGCTTGTTCAGATTAAGGAGTCTGAATATAAGACAGCATTTATAAAGAGTTTAGAAACAAGTGAAGTCAGCTATCGTACAGGGATAGGAGTTCAATCTTAGTTGGCAAGAGCGATGGGTACAAAAAGATCGACCGACTTTTTACATCGAAATCTTGAAAAAAGACCTGCTTTTTGATAAAATCAATCTAGAAACAGCGAAAATAATGTT # Right flank : CATCAACTGAACAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATCTTACTCGGAGGTTGTTTATGTCTGAGAATCAATCTATATATAGTCACCATATCTTTATCTTACCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGTGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGTAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAGTGTTATGACCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTCTCTATGAGGAATT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //