Array 1 14216-13637 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCN01000042.1 Corynebacterium striatum strain 2023 Consensus_from_Contig_27_mapping, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14215 29 100.0 32 ............................. CACCGCACAGAACACCCTCGACCATGTGATCC 14154 29 100.0 32 ............................. GACCCGTTGTTAATATCCGCGACGGGGGTTGG 14093 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 14032 29 100.0 32 ............................. GTCTCATCTTCACCTTCCCAGGTGATATTCGC 13971 29 100.0 32 ............................. GGCGGCCTTATCGATACTAAGGGTAAGACTCA 13910 29 100.0 32 ............................. ACGTCACGCGGCATAAAGCCTATTTCGTCCAA 13849 29 96.6 33 ............................G TGCACGGTTTGCCACGCGGCATGGGGCTAGTAG 13787 29 100.0 32 ............................. TTCCACCCGTAATAAGGTAGCGGGCTAGTCTC 13726 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 13665 29 93.1 0 ......................A....G. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.6 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : | # Right flank : TTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54755-55455 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCN01000053.1 Corynebacterium striatum strain 2023 Consensus_from_Contig_30_mapping, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54755 29 96.6 33 ............................A CACGCCGAACTCGTGCGAGTCTGGTTCGCCGGG 54817 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 54878 29 100.0 32 ............................. GGGAAAGTCGGTAATCATCGCGTAACTGATTA 54939 29 96.6 32 ............................A AGGACGGGGAACACAAGCTCAAATGGGCTTGG 55000 29 100.0 32 ............................. CTGCGCGGTCAGGGGCTTGTGGTTAGAGTTTT 55061 29 100.0 32 ............................. AAATCAAAGGATACATGATGGCATCCATCAAA 55122 29 96.6 32 ............................G GAACCCCAGGACCGGCACTTTGGTCAGATGGA 55183 29 100.0 32 ............................. TCGAAGTCACACAACACCTACTCCGAACTTGG 55244 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 55305 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 55366 29 96.6 32 ............................G GATGGAGACCACAGATCTGCTTAGCTTCCTCA 55427 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : GGCGACACCGGCCATCGGTGCGAGTAAGCCAGTCCGCCCCGCGTAAGCGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61863-62744 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCN01000047.1 Corynebacterium striatum strain 2023 Consensus_from_Contig_29_mapping, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61863 29 100.0 32 ............................. TTGCTAGTGTCTGGCTCGAAATACTTATTCGA 61924 29 100.0 32 ............................. GCTGACCCGCAAACCATCATCATCAACCCCGA 61985 29 100.0 32 ............................. CTATGTGGGATGTCTTTGAACTCTGGTACGAG 62046 29 100.0 32 ............................. AAGCAAAAGAGTTGAGAAAGTCAGCTTTCCTA 62107 29 100.0 32 ............................. TAGGAGACATAAATGTCTGTCGCAAGTTTTGT 62168 29 100.0 32 ............................. CAGCCACAGGAGTCATACAGGCCGGGGTGTGG 62229 29 100.0 32 ............................. TAGCAGGCAAGCAATTCTTCGATACGGATAAA 62290 29 100.0 32 ............................. ACTACTTGTCTGCGGAGCACGACCCGGCAAGT 62351 29 100.0 32 ............................. CTGGCTGGACACCCAATTAACCGCTAGTGACC 62412 28 93.1 32 ..................-.........A CAGGGCGGAAGAGCAGGGGCTGAAACTCGTCA 62472 29 100.0 32 ............................. TTATGGGCATGCTGCAAACGTTACAGGAATCG 62533 29 100.0 32 ............................. CTGACGCCGGACTCCGCGCCTCGCCAGGATAA 62594 29 100.0 32 ............................. ACAATTAGTACATCATGTGCCCTAGTGGGAGA 62655 29 100.0 32 ............................. CTAGCCGCCTATCTGCACAATCAGGGCGTGTG 62716 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : CTAAGGAAGCAACTACGCCGGGAGATCCATCGGAAGAACTTACTCGTCGACATGCTGGAAGTTCTCACAGAGGTACTCACGCCCCACTTACCTTCACGTGATGACGATCGACTCGTCTCTGGGCGCGGCGATGAAGTCGCCGGACACACACAATATGGACGGCGCTGAATGTTTCTTGTAATCACAACCACCAGCCTCCCAGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTTATGTAGGAAACGTTTCCCGTCGCGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCCATCGCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGT # Right flank : CC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1193-922 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBCN01000031.1 Corynebacterium striatum strain 2023 Consensus_from_Contig_52_mapping, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1192 29 100.0 30 ............................. TTCGCCACTGCGGCGCGGCCTTAGCGAAGA 1133 29 100.0 32 ............................. GGTTAAACGCCCGCGAGCTTTGCCTCGTCCTG 1072 29 100.0 32 ............................. AGGGGGCCAGGGCGCCGCGCCGTGGTGAGCTA 1011 29 100.0 32 ............................. TAAGCCTCACCTAACTCAGTGCTACCGCCTCC 950 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : GGTATTTCCAAGGTTCAGGCCGCCGGTGATTTCCAAGGCC # Right flank : TTTTAACGCTTCGCTTGGGTTCAGACCGTCGTTGCACCACTTCTAGTACGGAGGTGTTGTTATGGCACAGCGTCCGCAGGGCACTTTTGTGTCGTTATCGGAGTCGGATAAGGAGCAGTTGCGGCGGTTAATTGCCGGTGGCTTGAGTCTGCGCGCAGCGGTGCAAGAGGTTGGGTGTAATTATCAGCATGCGTATTTCTTTGCCCATTGTGAGCAGTTGATTCCATATAGTCCGCGTGGTCATGATGCTCAGGCTCTTGCGGCGGGCATCGAACTGGTGAGAAAGGGTGTGCGTGTGCATACCGCGGCGCGTCAGGTTGGTGTCTCTGATCCAGTTTTGCGCCGCCAGGCGTGCAAGCTAGGTTTGTGCGTGCCGGTCAGTCAGCTGCAACGGCGGATTAATGCCACCGAGCAACGTGTTATTTTCCTGCGTCTGCGACTAGCGAGCTTGTCGACTCGTGATGCTGCTGTAGCTTGTGGTATCAGTTTCCGTAAGGCGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //