Array 1 9427-8075 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ973522.1 Legionella pneumophila strain WD_4_1102b-36 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 9426 32 100.0 34 ................................ TCTTGTAGTGTCATTTGTTTCGTTACCGTTTGGT 9360 32 100.0 34 ................................ ATTTTTTCTATGATTTCCACTCGTGTTCCCTCAA 9294 32 100.0 34 ................................ TGATTCCTCTGGCTTTTCATCATCTTCACCAGAT 9228 32 100.0 34 ................................ CTAAGATGCGAGATTTTTTCCAAGATCAACACGG 9162 32 100.0 34 ................................ TTGCTCTATAATGCGTTTTAAATGGCCTGCAAGC 9096 32 100.0 34 ................................ TTAGATGCCCATTTGTAGCCCGCAGCTTTCAAAG 9030 32 100.0 34 ................................ ATAAGCGCTATTACAGAATCAAGCAGTTTTGCGC 8964 32 100.0 33 ................................ CTGTTTAGTTGAATATCTTGTATGTGCTAATAA 8899 32 100.0 34 ................................ ATAGCCACCATGCATTATTAAATCTCAATCCCTT 8833 32 100.0 34 ................................ ATCAAAGCATTTTTGGATTATCCTACGTATAGAG 8767 32 100.0 34 ................................ ATTTCCATCATATCGATTAAAATGATGGCCATAT 8701 32 100.0 34 ................................ TTCTCTATCCATATTGGGATTAGCCGGAATTACC 8635 32 100.0 34 ................................ TTTTTGGGTATGCCCGCTTGTGCCATGCGCTTAA 8569 32 100.0 35 ................................ GGGCATAACGCGAGCAAAAAAACTTGTCTTTGGCT 8502 32 100.0 34 ................................ ATGAGCGCAAAGTACAAAGCAATTTAGAACTTTT 8436 32 100.0 34 ................................ AACTTCCGATGCCAAGTGTTCTTGGATAGGCTGC 8370 32 100.0 34 ................................ TCGCTATTAGTAGAAAAAGCAAAAGAAGGAGAAT 8304 32 96.9 34 .................T.............. GTCTAACCCATGTTTGAGCTCTCGCCAGTAGTGC 8238 32 100.0 34 ................................ TCATTACCGTTTAGAGCCATCTGCGTAGCTGTAT 8172 32 100.0 34 ................................ TTGTTTTATGGTTAATTCGCTGGATTTTGGCCAG 8106 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 21 32 99.9 34 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TTTTGTACGATAAAATATAGGTTCGAAAATGATGATACTTGTAACTTATGATATTTCCGTGAGCGGCACTAGTGGTGCGAAAAGATTACGCCGAGTTGCTAAAGAGTGCTTGGATTATGGTGTTCGTGTTCAAAACTCGGTATTTGAGTGTGATGTTGAACCTGCTCAATGGGTAAAATTAAAATCTAATTTACTTAAAATTTATGACGAAGAACAGGATAGTCTACGATTTTATATGTTAGGGTCTAACTGGAGGATCAAGGTTGAACATTACGGGGCAAAACAGGCTGTTGATGTGTTTCGTGATATATTGATAATTTAGGAACGCTAACTATTGGCTCTCATCATTATACGGGCAGGTTAGCATTTTTGTAACTTATTGATAATTTTATTTAATTAAAAAAATTTAGATTTTTGCTCAATCAAGTTGTTGTAATTGACATATGGTTAGCGAAATCAAAGCTAAAACGCCTTTATTTTCTTAGTGTTAATAAAAGGCA # Right flank : TATCGTTTTAAGGCATTTGATGATGACAATTTGAGAACTTATCTTGCTTCACTTTAATGATAAGGATTGAAGCTGATACAAAAACAAATACTAAGATAGATGGAGAAGAAGGTATTTTTGTTTTTTCAACCAATAGTAAAGAAAGTAAAGGGGCTAATCCCGCGGATAAACTTGCTGCAGTGGAATACAGCACTGATAAAACTGTACAACGTAATTTAATAGGGAACATTTCAGCTAGGACGACTGGCACCGTTGCATAATAAGCTCCAGCAGGAATTGCAATTAATGCCTGACCTAATAAGAGATTATAAATATTATGATGAGACAGAACATAAAAAAACGGTTGGGAAAGAATTAGGAAACCTATACTGGCAAAGATCACAATTTTTTCTCGATTTACTTTATCCGATAGCTTACCTATTAAAGGGAATACAGCTAATAAAACTATTAGCGAGAGTATATTGGATAAAATAATTTCATGGTCTTGAAAATCACCATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 46420-43148 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ973522.1 Legionella pneumophila strain WD_4_1102b-36 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 46419 28 100.0 32 ............................ AATATTCTACATTTGGGACTTCGATTGTTCTT 46359 28 100.0 32 ............................ ATATAAATCTTTAAGTTTTTCTGTACTGATAA 46299 28 100.0 32 ............................ ACTAGCAGCCCAACTATCAGCAACATTAAAAT 46239 28 100.0 32 ............................ TTTTAAAAATGCATTATTCATTGCGTTTATTC 46179 28 100.0 32 ............................ TTAAACAATATTGACAATACATCTAGTAAGTA 46119 28 100.0 32 ............................ TATAGCAGCAGCAACTACTCCTACAAATGGCT 46059 28 100.0 32 ............................ TGAACTTGAACTATACCACACTATAGAATTAA 45999 28 100.0 32 ............................ AGCTTCACAATCACTAACACACATATTGTGTA 45939 28 100.0 32 ............................ TTACCTGCAATTACAGGCGGTGGAAATGAGGC 45879 28 100.0 32 ............................ TTTGTAATTGTCTCCACCATGCTTTTTTATCC 45819 28 100.0 32 ............................ AAAGACACTGCACCATCCCAAGGACAACCTCT 45759 28 100.0 32 ............................ AAACAACCAGCATATCGTTCTCATCAGCAACT 45699 28 100.0 32 ............................ AAGCGCAAGCGATCAAGGTCGTTGGTCTCAAA 45639 28 100.0 32 ............................ AACAGCGGGTGCGACATCAAATTTAATAATAA 45579 28 100.0 32 ............................ ATTAGCACCACTTGCCCCCGCAGTCGATGTAG 45519 28 100.0 32 ............................ TACAGATAACACTGAATATGAGGCTTACGGAT 45459 28 100.0 32 ............................ TTGCTTATTTTCTTCTTTTTGCTCGTCTTTGC 45399 28 100.0 32 ............................ TGACGTTAACAATGAAATTAAAGTCAAAAGTG 45339 28 100.0 32 ............................ GTGCGACATAGGAGTAAAGTTAAAATCGCAAA 45279 28 100.0 32 ............................ ACTAAGTTCTATATATCCAAGTCCTTTGCATT 45219 28 100.0 32 ............................ AAAGATTGCACGTAAATTTAAATTGTTTTCTA 45159 28 100.0 32 ............................ AAAACACCAGGATTATGAATGTGTCTTTTTAA 45099 28 100.0 32 ............................ ATAATCTCTGCGAATTGCTTGAGCTAAATCTT 45039 28 100.0 32 ............................ ATAATTCTCAGTTTCAGTAAGTATACCATATC 44979 28 100.0 32 ............................ TGAAACACTTTCAAAAGTGGCTTCGTATTCTT 44919 28 100.0 32 ............................ TGCTTTGAGTCATATTGGAGAGCAAGCTGTTC 44859 28 100.0 32 ............................ AAATGCCTGCGCTATTTGAGCATTGCGCGCAG 44799 28 100.0 32 ............................ GTCCAGAAGATAGATTGCTCGTACTCAGCATC 44739 28 100.0 32 ............................ AAAACGCCATCAATTCAACACCATCACTAATG 44679 28 100.0 32 ............................ AATGTTCTTTTGAAAAAATTAATTAATAGTCA 44619 28 100.0 32 ............................ TGTATACTGCATAATGGGGGTATTATTGCACA 44559 28 100.0 32 ............................ ATTTGCCATCAACACAAACTCTTTCTTTATTC 44499 28 100.0 32 ............................ TCAATCTGGGGTACTGACCGGCTCATATCATA 44439 28 100.0 32 ............................ AGCGTGGGGTAAACAAATATTTGATAGCTTAA 44379 28 100.0 32 ............................ TCTATATGCTCTCGCTTAATGTCTTTTAATGT 44319 28 100.0 32 ............................ TTTGAACGATCAAAGGCTCAATCTTGTTTCCC 44259 28 100.0 32 ............................ ATTCGTCCTTGGTAACGTAGAGTTAATCTATA 44199 28 100.0 35 ............................ CCAATTAATCACCCTACTAGTACAAATTTTATACT 44136 28 100.0 32 ............................ TTCTTAGCCCCTAACACTTGCATTTAAAATAT 44076 28 100.0 32 ............................ TAAAGTGATGATAGGTTCCCAACCATTGCGAG 44016 28 100.0 32 ............................ TTTTGGGGTAATTAGTGTGTGTTTGCAAATGC 43956 28 100.0 32 ............................ TAAACGCTGGATCTCTATCCTGTGTTTGATGT 43896 28 100.0 32 ............................ ATTCGAGGACAATAAATCCCAGTTTAACCCTT 43836 28 100.0 32 ............................ GCTAACCCAACATTAATCAAGTATAATAATTT 43776 28 100.0 32 ............................ AAATACAATTGGTATGGTGTTTTGTAGCTAGA 43716 28 100.0 32 ............................ AGCAGATATCTCATCCCATTCATTATCTGATT 43656 28 100.0 33 ............................ CAGTACCCGCTACCAAACAAAGTGCCAAACCAT 43595 28 100.0 32 ............................ ATTTGGAGAAATGGATATCCCCATTTGGTGAC 43535 28 100.0 32 ............................ AAAACGAATCATTAATGGAATTGCGCATGAAA 43475 28 100.0 32 ............................ AAACCTAAAATAAGTATATACTGAATTTGAAT 43415 28 100.0 32 ............................ AGTGATTTAGATAATTCTCAGCTTCCTGTTTT 43355 28 100.0 32 ............................ ATTTGTACCCCGCAGCCTTCAAAGCGTCCTTG 43295 28 100.0 32 ............................ TTGTTTTGTTTAAATAAATTGCGCTGATTTAT 43235 28 100.0 32 ............................ TGTACTTATTTCATTTCCTGTAATATGTAATA 43175 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 55 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAG # Left flank : CAATCAAAAATGAGGCGATTATTTAAACGTGGTTCGATGACAGTGGGTGATATCAGGCAATACAAAGCTAAAATGTTTGCCAAAAGTATTGATAACCCTTATCTTGAATTGGTAAGTGGATCAAATGGGTATAGATATAGGCGCTACATTGAATTTGGTGAGTTACTCGACCAGCCAGTTTATGGAGAATTTGATCGGTTTGGTCTTTCCAAAACAGCCACTGTCCCCTGGTTTGATTAAATAAAAGAATATGAAATCAGTTAAGTTCGAAAGGTTGAAGTGGAAGTTTGTAATTTGTTCAAATACTTGAGTCATTTTTCTAAATAAGATAGAAATAATAGGTAATTTGAATATTTCATACTTCAAATTACCTATTATTTCATCTAATGTTAATTTGTTATTAAAATCAAATGGATATAACTAATTGGGAAAAATTGGGTAAATCAATTTTTTCCAATTATCTCTTTGTTTTATCAGTTTTTTTATGGATGATGTTACAG # Right flank : AGTCCTTTAGCTTTATGGACAGTCGACAGCATTTCAAAATTCTAGTGTTGAATATACTACTAAATTTAAAGTGATGGGGTTAAACTGTAACAGTTTTAAATTGATATGATATAGATCAATGAGCCTAATTATTACTCAATTTCTATGTAAACAAAAAATGTAACATCTATCACAAGTTGTTCGTAATTTGCATTCTAATAAAAAAAATAGCCATTTTGTATATATGCAATATTTCCATTTTCATTATAGAAACGGCCCCATATGGAGCCTAATAATTGAGAAAAATATAGACAAACCCATTAAAGGATACTGAACAATAATCACTGATAAAAAGATCTCGAGCAAAAGCCTCAAAATCAAAATAGCAGATCAAACAATCCGGCATTTGATGGGCATAACAGTCATCAAATAACTGTCTGGCAAAATCTACCTCTGAATCATAACAACCTAGATAATGATCCTCCAACATGGTTTGGGCATCATCTACCGAATAATCACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //