Array 1 46507-46358 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYE01000001.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46506 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 46446 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 46385 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 170293-170138 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYE01000017.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 170292 33 100.0 27 ................................. GCAGCCCACAGAGCGGACGTTGATGGG 170232 33 100.0 29 ................................. ACGGCCCACGGAACAGGCGTTAATGGGGA 170170 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================= ================== 3 33 100.0 28 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Left flank : GGGTTGCGGTTACGGCGGGTGCGAGGGTGACGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGA # Right flank : ATCACAGATAATCACACCTCACCACAACCCCTCCCGCCGCAACGAGAAGAGCTTACGACGCGGCGATAAACAGCTCGCGCAGTTGATGAAGCTTATCGCGCAGTTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGCTGCACCATCTGCGCTTCAAGCTGATGAATTTTCTGCTGCAACGCTTTTGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTGTTAAGCCCCTGCGGCACAATACCGTGCTCTTCGTTATACGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCCTTGCCGTTCACGTTACGCGCCGCACGGCCAATCGTCTGAATAAGAGAACGTTCGGAGCGCAGGAAGCCCTCT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 43313-46025 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYE01000011.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43313 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 43374 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 43435 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 43496 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 43557 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 43618 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 43679 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 43740 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 43801 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 43862 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 43923 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 43984 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 44045 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 44106 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 44167 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 44228 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 44289 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 44350 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 44411 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 44472 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 44533 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 44594 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 44655 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 44716 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 44777 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 44838 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 44899 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 44960 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 45021 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 45082 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 45143 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 45204 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 45265 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 45326 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 45387 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 45448 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 45509 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 45570 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 45631 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 45692 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 45753 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 45814 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 45875 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 45936 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 45997 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73631-72625 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYE01000038.1 Cronobacter sakazakii strain MOD1-comp57b csakComp57_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73630 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 73569 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 73508 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 73447 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 73386 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 73325 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 73264 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 73203 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 73142 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 73081 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 73020 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 72959 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 72898 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 72837 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 72775 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 72714 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 72653 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //